jgi.p|Nanoce1779_2|660082, mRNA_2184 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|660082
Unique NamemRNA_2184
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1146
Alignment locationscaffold_4:991570..992715 -

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Properties
Property NameValue
TranscriptId660168
TrackFilteredModels2
ProteinId660082
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:991570..992715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|660082gene_2184Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2184CDS_2184Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|660082mRNA_2184-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2184 ID=mRNA_2184|Name=jgi.p|Nanoce1779_2|660082|organism=Nannochloropsis oceanica|type=mRNA|length=1146bp
AGCTCACTACCAGGACATTTTCCTGCATTTGTCGTCAACTCCCAAACTAT
GGCGGAAGTGGGCAGCAGTTTGGCCGAACGCATAGAACAAGCCAAAACGA
AGGCACAGACGCTAAAAACGGAGATTGAGGAAATAAGAAAACAAAAAGAC
AATGCTACCCTGCCAGGTGCTGCTAGGAGCCAGTCTTTGCCCAAATTTGA
GGACAAAATGCCCAGGGTACGAAGGGTGCTCAAAGGCCATTTTGGCAAGG
TCTACTCCATGCATTGGGCGCACGACGGCACACAGCTCATCTCGGCCTCG
CAAGACGGCAAGCTCATCATTTGGAACGCTCACACCACAAACAAGAATCA
ATCCATCTCCCTTCGCTCCTCTTGGGTCATGACCTGCTGCTTTGAACAAA
CGACGGGCTCTTTGGTGGCGTGCGGCGGGTTGGACAATGTTTGCTCTGTC
TACCGCGTTGGCGGGCCCGGGAGCTCCGCTTCCTCCTCTGCCGCAGCACA
ATCGGCGGTGAGACCTGCCCATGAGCTCATGGCTCACGACGGATATCTGT
CTTGCTGCCGCTTTTTGGACGAGGGAAGCTTGTTGACCTCCTCGGGGGAC
TCAACGTGCATTTTTTGGGATGTGGAGAAGAATGAGGCGATTACTTCTTT
CGCGGACCATGGAGGGGATGTGATGAGCCTTTCGGTTTTACCCAGCGTGA
GTCGACAGGTGTTCGTCTCGGGATCGTGCGATGCGACGGCTAAGGTGTGG
GACATCCGGTCGGGGAAGTGTGTACAGACATTCATAGGGCATGAAAGTGA
CGTGAACTCGGTGCAGTTTTTCCCAGACGGGAATGCTGTCGGCACTGGAT
CGGACGATTCGACATGCCGTCTGTTTGATTTGCGGTCATACGGCGAGGTG
AATGTGTTTGGGAACGATAAAATTGTTTCAGGGGTCACGAGTGTGGCGTT
CTCAGCCTCGGGCCGGGTGCTATTCGCCGGCCACGATGATTCGAGTTGTG
TGGGTTGGGATACGATTGGGGAGGGAAAGAACGTCGCTTTTCAATTGGCA
GGGCATGACAGCCGCATATCGTGCCTTGGAATGAATAGCAAGGGGGAGGC
TTTGTGCACGGGCTCGTGGGATTCGTTGTTAAAGGTGTGGGCGTAG
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protein sequence of jgi.p|Nanoce1779_2|660082

>mRNA_2184-protein ID=mRNA_2184-protein|Name=jgi.p|Nanoce1779_2|660082|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MAEVGSSLAERIEQAKTKAQTLKTEIEEIRKQKDNATLPGAARSQSLPKF
EDKMPRVRRVLKGHFGKVYSMHWAHDGTQLISASQDGKLIIWNAHTTNKN
QSISLRSSWVMTCCFEQTTGSLVACGGLDNVCSVYRVGGPGSSASSSAAA
QSAVRPAHELMAHDGYLSCCRFLDEGSLLTSSGDSTCIFWDVEKNEAITS
FADHGGDVMSLSVLPSVSRQVFVSGSCDATAKVWDIRSGKCVQTFIGHES
DVNSVQFFPDGNAVGTGSDDSTCRLFDLRSYGEVNVFGNDKIVSGVTSVA
FSASGRVLFAGHDDSSCVGWDTIGEGKNVAFQLAGHDSRISCLGMNSKGE
ALCTGSWDSLLKVWA*
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mRNA from alignment at scaffold_4:991570..992715-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2184 ID=mRNA_2184|Name=jgi.p|Nanoce1779_2|660082|organism=Nannochloropsis oceanica|type=mRNA|length=1146bp|location=Sequence derived from alignment at scaffold_4:991570..992715- (Nannochloropsis oceanica)
AGCTCACTACCAGGACATTTTCCTGCATTTGTCGTCAACTCCCAAACTAT
GGCGGAAGTGGGCAGCAGTTTGGCCGAACGCATAGAACAAGCCAAAACGA
AGGCACAGACGCTAAAAACGGAGATTGAGGAAATAAGAAAACAAAAAGAC
AATGCTACCCTGCCAGGTGCTGCTAGGAGCCAGTCTTTGCCCAAATTTGA
GGACAAAATGCCCAGGGTACGAAGGGTGCTCAAAGGCCATTTTGGCAAGG
TCTACTCCATGCATTGGGCGCACGACGGCACACAGCTCATCTCGGCCTCG
CAAGACGGCAAGCTCATCATTTGGAACGCTCACACCACAAACAAGAATCA
ATCCATCTCCCTTCGCTCCTCTTGGGTCATGACCTGCTGCTTTGAACAAA
CGACGGGCTCTTTGGTGGCGTGCGGCGGGTTGGACAATGTTTGCTCTGTC
TACCGCGTTGGCGGGCCCGGGAGCTCCGCTTCCTCCTCTGCCGCAGCACA
ATCGGCGGTGAGACCTGCCCATGAGCTCATGGCTCACGACGGATATCTGT
CTTGCTGCCGCTTTTTGGACGAGGGAAGCTTGTTGACCTCCTCGGGGGAC
TCAACGTGCATTTTTTGGGATGTGGAGAAGAATGAGGCGATTACTTCTTT
CGCGGACCATGGAGGGGATGTGATGAGCCTTTCGGTTTTACCCAGCGTGA
GTCGACAGGTGTTCGTCTCGGGATCGTGCGATGCGACGGCTAAGGTGTGG
GACATCCGGTCGGGGAAGTGTGTACAGACATTCATAGGGCATGAAAGTGA
CGTGAACTCGGTGCAGTTTTTCCCAGACGGGAATGCTGTCGGCACTGGAT
CGGACGATTCGACATGCCGTCTGTTTGATTTGCGGTCATACGGCGAGGTG
AATGTGTTTGGGAACGATAAAATTGTTTCAGGGGTCACGAGTGTGGCGTT
CTCAGCCTCGGGCCGGGTGCTATTCGCCGGCCACGATGATTCGAGTTGTG
TGGGTTGGGATACGATTGGGGAGGGAAAGAACGTCGCTTTTCAATTGGCA
GGGCATGACAGCCGCATATCGTGCCTTGGAATGAATAGCAAGGGGGAGGC
TTTGTGCACGGGCTCGTGGGATTCGTTGTTAAAGGTGTGGGCGTAG
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Coding sequence (CDS) from alignment at scaffold_4:991570..992715-

>mRNA_2184 ID=mRNA_2184|Name=jgi.p|Nanoce1779_2|660082|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at scaffold_4:991570..992715- (Nannochloropsis oceanica)
ATGGCGGAAGTGGGCAGCAGTTTGGCCGAACGCATAGAACAAGCCAAAAC
GAAGGCACAGACGCTAAAAACGGAGATTGAGGAAATAAGAAAACAAAAAG
ACAATGCTACCCTGCCAGGTGCTGCTAGGAGCCAGTCTTTGCCCAAATTT
GAGGACAAAATGCCCAGGGTACGAAGGGTGCTCAAAGGCCATTTTGGCAA
GGTCTACTCCATGCATTGGGCGCACGACGGCACACAGCTCATCTCGGCCT
CGCAAGACGGCAAGCTCATCATTTGGAACGCTCACACCACAAACAAGAAT
CAATCCATCTCCCTTCGCTCCTCTTGGGTCATGACCTGCTGCTTTGAACA
AACGACGGGCTCTTTGGTGGCGTGCGGCGGGTTGGACAATGTTTGCTCTG
TCTACCGCGTTGGCGGGCCCGGGAGCTCCGCTTCCTCCTCTGCCGCAGCA
CAATCGGCGGTGAGACCTGCCCATGAGCTCATGGCTCACGACGGATATCT
GTCTTGCTGCCGCTTTTTGGACGAGGGAAGCTTGTTGACCTCCTCGGGGG
ACTCAACGTGCATTTTTTGGGATGTGGAGAAGAATGAGGCGATTACTTCT
TTCGCGGACCATGGAGGGGATGTGATGAGCCTTTCGGTTTTACCCAGCGT
GAGTCGACAGGTGTTCGTCTCGGGATCGTGCGATGCGACGGCTAAGGTGT
GGGACATCCGGTCGGGGAAGTGTGTACAGACATTCATAGGGCATGAAAGT
GACGTGAACTCGGTGCAGTTTTTCCCAGACGGGAATGCTGTCGGCACTGG
ATCGGACGATTCGACATGCCGTCTGTTTGATTTGCGGTCATACGGCGAGG
TGAATGTGTTTGGGAACGATAAAATTGTTTCAGGGGTCACGAGTGTGGCG
TTCTCAGCCTCGGGCCGGGTGCTATTCGCCGGCCACGATGATTCGAGTTG
TGTGGGTTGGGATACGATTGGGGAGGGAAAGAACGTCGCTTTTCAATTGG
CAGGGCATGACAGCCGCATATCGTGCCTTGGAATGAATAGCAAGGGGGAG
GCTTTGTGCACGGGCTCGTGGGATTCGTTGTTAAAGGTGTGGGCGTAG
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Synonyms
Publications