jgi.p|Nanoce1779_2|579390, mRNA_2183 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579390
Unique Name	mRNA_2183
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	792
Alignment location	scaffold_4:990234..991025 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579476
Track	FilteredModels2
ProteinId	579390

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:990234..991025 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579390	gene_2183	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579390	mRNA_2183-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2183	CDS_2183	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:990234..991025+
coding sequence from alignment at scaffold_4:990234..991025+

mRNA sequence

>mRNA_2183 ID=mRNA_2183|Name=jgi.p|Nanoce1779_2|579390|organism=Nannochloropsis oceanica|type=mRNA|length=792bp
ACAGCATCCATTACTATGGCCGCCACCGCCGAGCAGCTCGCTCGGTCACT
CACCCAAGACATAACTGAGACTCAAGCACGCTTGGACACATGGCTCGAGA
GCTCCAAAGCTGACCTCGAAGGGCTTGAGACACGACACGGAAAAGCCCTA
GCAGAGATGGGTGCCGAACGTGCCACATTGCTGGCGCGGCAGGCCGAGCT
CAAGAACAAGACGGAGGAAGGGGCACGCCTTTCCCAACAGGACCAAGAAG
CGTTATCAGCCGTAGAAGCGGAAATCGCCGCACTGAAAGAGAAAGAAAGA
GCATTACCCCAGGAACTGGCCACGGCGCGCGAGAGGGAAGAAGAGCTGCG
ACAGGTGCTGGCGGGGAAAAGGGCAGCGCTGGGTTCCTTGACTTCGCGTC
AGGGGGAATATATCAATGATTTGACCAGGGGGGTGGTGATGTACAAGCAC
CTTGGGTTGGATTTTGAAAGGGCCGACGATAACAAGCTCAGGCTCATCTT
TACACAGCTTGACTCGAGTAACCCAGGGAGAGAATTTTTCTTCTCGGTAC
ACATTGATGAGAACGACCAATATCGGGTAGAGGAGTGTGTGCCGGCGTTG
GACGTGGGGATGGTAGAGGGCTTGGTGGGGGAGGTTAATAAGGCGAATGA
TTTTGCAACGTTTGTAAAAAAAATGCGAAGGGCGTTTAAGGTCACGATTG
GATCGAATTGAAGGGGAGACATAGGGAGTGAAGGGAGGGCTGGACAGGAC
GGTGGTGGAGAGTTGGGTGGTGAATAAAGGGTGAGGGAAGGG

protein sequence of jgi.p|Nanoce1779_2|579390

>mRNA_2183-protein ID=mRNA_2183-protein|Name=jgi.p|Nanoce1779_2|579390|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MAATAEQLARSLTQDITETQARLDTWLESSKADLEGLETRHGKALAEMGA
ERATLLARQAELKNKTEEGARLSQQDQEALSAVEAEIAALKEKERALPQE
LATAREREEELRQVLAGKRAALGSLTSRQGEYINDLTRGVVMYKHLGLDF
ERADDNKLRLIFTQLDSSNPGREFFFSVHIDENDQYRVEECVPALDVGMV
EGLVGEVNKANDFATFVKKMRRAFKVTIGSN*

mRNA from alignment at scaffold_4:990234..991025+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2183 ID=mRNA_2183|Name=jgi.p|Nanoce1779_2|579390|organism=Nannochloropsis oceanica|type=mRNA|length=792bp|location=Sequence derived from alignment at scaffold_4:990234..991025+ (Nannochloropsis oceanica)
ACAGCATCCATTACTATGGCCGCCACCGCCGAGCAGCTCGCTCGGTCACT
CACCCAAGACATAACTGAGACTCAAGCACGCTTGGACACATGGCTCGAGA
GCTCCAAAGCTGACCTCGAAGGGCTTGAGACACGACACGGAAAAGCCCTA
GCAGAGATGGGTGCCGAACGTGCCACATTGCTGGCGCGGCAGGCCGAGCT
CAAGAACAAGACGGAGGAAGGGGCACGCCTTTCCCAACAGGACCAAGAAG
CGTTATCAGCCGTAGAAGCGGAAATCGCCGCACTGAAAGAGAAAGAAAGA
GCATTACCCCAGGAACTGGCCACGGCGCGCGAGAGGGAAGAAGAGCTGCG
ACAGGTGCTGGCGGGGAAAAGGGCAGCGCTGGGTTCCTTGACTTCGCGTC
AGGGGGAATATATCAATGATTTGACCAGGGGGGTGGTGATGTACAAGCAC
CTTGGGTTGGATTTTGAAAGGGCCGACGATAACAAGCTCAGGCTCATCTT
TACACAGCTTGACTCGAGTAACCCAGGGAGAGAATTTTTCTTCTCGGTAC
ACATTGATGAGAACGACCAATATCGGGTAGAGGAGTGTGTGCCGGCGTTG
GACGTGGGGATGGTAGAGGGCTTGGTGGGGGAGGTTAATAAGGCGAATGA
TTTTGCAACGTTTGTAAAAAAAATGCGAAGGGCGTTTAAGGTCACGATTG
GATCGAATTGAAGGGGAGACATAGGGAGTGAAGGGAGGGCTGGACAGGAC
GGTGGTGGAGAGTTGGGTGGTGAATAAAGGGTGAGGGAAGGG

Coding sequence (CDS) from alignment at scaffold_4:990234..991025+

>mRNA_2183 ID=mRNA_2183|Name=jgi.p|Nanoce1779_2|579390|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_4:990234..991025+ (Nannochloropsis oceanica)
ATGGCCGCCACCGCCGAGCAGCTCGCTCGGTCACTCACCCAAGACATAAC
TGAGACTCAAGCACGCTTGGACACATGGCTCGAGAGCTCCAAAGCTGACC
TCGAAGGGCTTGAGACACGACACGGAAAAGCCCTAGCAGAGATGGGTGCC
GAACGTGCCACATTGCTGGCGCGGCAGGCCGAGCTCAAGAACAAGACGGA
GGAAGGGGCACGCCTTTCCCAACAGGACCAAGAAGCGTTATCAGCCGTAG
AAGCGGAAATCGCCGCACTGAAAGAGAAAGAAAGAGCATTACCCCAGGAA
CTGGCCACGGCGCGCGAGAGGGAAGAAGAGCTGCGACAGGTGCTGGCGGG
GAAAAGGGCAGCGCTGGGTTCCTTGACTTCGCGTCAGGGGGAATATATCA
ATGATTTGACCAGGGGGGTGGTGATGTACAAGCACCTTGGGTTGGATTTT
GAAAGGGCCGACGATAACAAGCTCAGGCTCATCTTTACACAGCTTGACTC
GAGTAACCCAGGGAGAGAATTTTTCTTCTCGGTACACATTGATGAGAACG
ACCAATATCGGGTAGAGGAGTGTGTGCCGGCGTTGGACGTGGGGATGGTA
GAGGGCTTGGTGGGGGAGGTTAATAAGGCGAATGATTTTGCAACGTTTGT
AAAAAAAATGCGAAGGGCGTTTAAGGTCACGATTGGATCGAATTGA

Synonyms

Publications