jgi.p|Nanoce1779_2|524194, mRNA_2182 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|524194
Unique NamemRNA_2182
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length822
Alignment locationscaffold_4:988517..989338 +

Link to JBrowse

Properties
Property NameValue
TranscriptId524280
TrackFilteredModels2
ProteinId524194
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:988517..989338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524194gene_2182Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524194mRNA_2182-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2182CDS_2182Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2182 ID=mRNA_2182|Name=jgi.p|Nanoce1779_2|524194|organism=Nannochloropsis oceanica|type=mRNA|length=822bp
ATGGCGAAGGCGACAGCCACGGCACAAGCCCGTGATGAAGGAGCAGCAGC
AGCTGCTGCTGCTGCTACTTTTACTGCGGGGAGGGTGACAGGCAAGTTTT
TGAGTTTTGAGCAGCAGCGAGGCGAAGGGGGAGAAGGAGGAGGAAATAGG
CAAGTGGACGACGATGGGAGATATGACCCGGTGCAGCGTAGCACCAACCA
GCGCACGGGCCACTCTGTCACTCCTCTGGACATCCCTCCTCCACCGCTCT
CTTCCTCTTCCTCGGCAGGTGGTGGGGGGTTCGGCAGCACCAGTGGCAGC
GGCGTAGGTGGTGGGGGAGGGGGGGGAAGGGATGGGGAGGGTGACCTGGC
AAGTTTGGGAGATCAGTACGTGGTGATCAAGCAGTTGACTGCTGATTTTC
AGTCGGAGCGATTGAGGGATTTGCAGCTCATTGCGCAGATGCAGGAGGAG
ATGTCGGAAATGAATGCGACACAGGCAAAACTACAAGAGCAGGAGCGGGT
GCTTAAGGTTGCTTTGAGGACAGCAGAGGAGAGTTTGGCGAGAGAAAGGG
AGTTGCATGCGGGGCCGGTGAATGTAGAATATCTGAAGCATGCTATATAC
GGTTTTCTGACCGCGCATAACGACAAGGAGCGCTTAACGTTGCTTTCTGT
GATTGTAACCATGTTGCATTTTAGCCCTGAGGAGGCGAGCAAGGCGAGGG
CGGCGACGCAGGGAGGTGAGGGCGTGGTGGGAGGGGTGAAGGGATGGATA
AGCTCGAAGCTTGGTGGTGGGGGCGGGGGCGGGGGAGGAGGGGGGATGGT
GAGGGATGGGGGGCCTGTGTGA
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protein sequence of jgi.p|Nanoce1779_2|524194

>mRNA_2182-protein ID=mRNA_2182-protein|Name=jgi.p|Nanoce1779_2|524194|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MAKATATAQARDEGAAAAAAAATFTAGRVTGKFLSFEQQRGEGGEGGGNR
QVDDDGRYDPVQRSTNQRTGHSVTPLDIPPPPLSSSSSAGGGGFGSTSGS
GVGGGGGGGRDGEGDLASLGDQYVVIKQLTADFQSERLRDLQLIAQMQEE
MSEMNATQAKLQEQERVLKVALRTAEESLARERELHAGPVNVEYLKHAIY
GFLTAHNDKERLTLLSVIVTMLHFSPEEASKARAATQGGEGVVGGVKGWI
SSKLGGGGGGGGGGGMVRDGGPV*
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mRNA from alignment at scaffold_4:988517..989338+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2182 ID=mRNA_2182|Name=jgi.p|Nanoce1779_2|524194|organism=Nannochloropsis oceanica|type=mRNA|length=822bp|location=Sequence derived from alignment at scaffold_4:988517..989338+ (Nannochloropsis oceanica)
ATGGCGAAGGCGACAGCCACGGCACAAGCCCGTGATGAAGGAGCAGCAGC
AGCTGCTGCTGCTGCTACTTTTACTGCGGGGAGGGTGACAGGCAAGTTTT
TGAGTTTTGAGCAGCAGCGAGGCGAAGGGGGAGAAGGAGGAGGAAATAGG
CAAGTGGACGACGATGGGAGATATGACCCGGTGCAGCGTAGCACCAACCA
GCGCACGGGCCACTCTGTCACTCCTCTGGACATCCCTCCTCCACCGCTCT
CTTCCTCTTCCTCGGCAGGTGGTGGGGGGTTCGGCAGCACCAGTGGCAGC
GGCGTAGGTGGTGGGGGAGGGGGGGGAAGGGATGGGGAGGGTGACCTGGC
AAGTTTGGGAGATCAGTACGTGGTGATCAAGCAGTTGACTGCTGATTTTC
AGTCGGAGCGATTGAGGGATTTGCAGCTCATTGCGCAGATGCAGGAGGAG
ATGTCGGAAATGAATGCGACACAGGCAAAACTACAAGAGCAGGAGCGGGT
GCTTAAGGTTGCTTTGAGGACAGCAGAGGAGAGTTTGGCGAGAGAAAGGG
AGTTGCATGCGGGGCCGGTGAATGTAGAATATCTGAAGCATGCTATATAC
GGTTTTCTGACCGCGCATAACGACAAGGAGCGCTTAACGTTGCTTTCTGT
GATTGTAACCATGTTGCATTTTAGCCCTGAGGAGGCGAGCAAGGCGAGGG
CGGCGACGCAGGGAGGTGAGGGCGTGGTGGGAGGGGTGAAGGGATGGATA
AGCTCGAAGCTTGGTGGTGGGGGCGGGGGCGGGGGAGGAGGGGGGATGGT
GAGGGATGGGGGGCCTGTGTGA
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Coding sequence (CDS) from alignment at scaffold_4:988517..989338+

>mRNA_2182 ID=mRNA_2182|Name=jgi.p|Nanoce1779_2|524194|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at scaffold_4:988517..989338+ (Nannochloropsis oceanica)
ATGGCGAAGGCGACAGCCACGGCACAAGCCCGTGATGAAGGAGCAGCAGC
AGCTGCTGCTGCTGCTACTTTTACTGCGGGGAGGGTGACAGGCAAGTTTT
TGAGTTTTGAGCAGCAGCGAGGCGAAGGGGGAGAAGGAGGAGGAAATAGG
CAAGTGGACGACGATGGGAGATATGACCCGGTGCAGCGTAGCACCAACCA
GCGCACGGGCCACTCTGTCACTCCTCTGGACATCCCTCCTCCACCGCTCT
CTTCCTCTTCCTCGGCAGGTGGTGGGGGGTTCGGCAGCACCAGTGGCAGC
GGCGTAGGTGGTGGGGGAGGGGGGGGAAGGGATGGGGAGGGTGACCTGGC
AAGTTTGGGAGATCAGTACGTGGTGATCAAGCAGTTGACTGCTGATTTTC
AGTCGGAGCGATTGAGGGATTTGCAGCTCATTGCGCAGATGCAGGAGGAG
ATGTCGGAAATGAATGCGACACAGGCAAAACTACAAGAGCAGGAGCGGGT
GCTTAAGGTTGCTTTGAGGACAGCAGAGGAGAGTTTGGCGAGAGAAAGGG
AGTTGCATGCGGGGCCGGTGAATGTAGAATATCTGAAGCATGCTATATAC
GGTTTTCTGACCGCGCATAACGACAAGGAGCGCTTAACGTTGCTTTCTGT
GATTGTAACCATGTTGCATTTTAGCCCTGAGGAGGCGAGCAAGGCGAGGG
CGGCGACGCAGGGAGGTGAGGGCGTGGTGGGAGGGGTGAAGGGATGGATA
AGCTCGAAGCTTGGTGGTGGGGGCGGGGGCGGGGGAGGAGGGGGGATGGT
GAGGGATGGGGGGCCTGTGTGA
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Synonyms
Publications