jgi.p|Nanoce1779_2|579384, mRNA_2181 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579384
Unique NamemRNA_2181
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1330
Alignment locationscaffold_4:983983..985312 -

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Properties
Property NameValue
TranscriptId579470
TrackFilteredModels2
ProteinId579384
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:983983..985312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579384gene_2181Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579384mRNA_2181-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2181CDS_2181Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2181 ID=mRNA_2181|Name=jgi.p|Nanoce1779_2|579384|organism=Nannochloropsis oceanica|type=mRNA|length=1330bp
GTACTCTGCTAGATGGACAATCAAACCTACATTCTCCAAATGGACAAACC
AGCCCCGACGTAGTCTCGTCTTGTCCATCTGTAAGCCTGGTGCTGAAGGG
TACTCTTTGGTTATCAAAGCTGGCTTGCCCTGTCCTTCGAGCTGAGATCA
AGCAAAGCCTCCCCTCCCCAACAAGTGCTTGCGCTTGTACATTTACCGCC
CTACTACCCCCACAATCACATACAGCTTCGTTATGGGTAGCGTAAAGGGG
CTGAAAGGCCTCACCGCCCTTATCTTGGGCCCGCCCGGCGGAGGGAAAGG
CACGATTAGCAAGAAGCTGCTCAAGGAGTTTGGCTTCCTACATTTCTCCA
CGGGAGACGTCTTGCGGAAGCACGTCCGAGAGCAGACGGCGGTCGGCATG
GCGGCCCAGAAGTTTATGCTCACAGGTATTTTTGGTGGGCCTTGATAGGA
TAGATATGGACGGGCTGCTGCTGAGGGCGTGGAGAGGGGAGGGAGGGACG
GCGGAGTTTTTTGTTCTCCAACTAGCATACTGATGGATGTACGTGCGCGT
GAATGTGGGTATGCTTATGCATGAACGCAATGGGCAATTTCCTGGCTAAA
GATAGGATGGAGGCAAGGGGCGCTCTCAAAAGAAGGGAGCTGGGATCTAT
CTTTTTCTCATTGCGCTCTCTTAAAGCCTCTCCACACCCACCCCACTCAT
CCTCCCTCCCTCCCAATTAATCTTACGCACGTAGGTGCTTTAGTCCCTGA
CAAGGTTATGGTGGACCTAGTAGTGGAAGAGCTGGCATCCAAGGGCCACA
TGCCTCGCCTGCTTCTGGATGGATTCCCGCGCACCATTCCTCAAGCCATC
GCGTTGGAGCAGCACGTGAAAATTGACACGGTCATTGACCTTGAAATACC
GGACCAGACAATCATCGAGCGGATTTCGAACCGATGGATCCACGCCGCAT
CGGGACGGACGTATGCGTATGACTACAACCCGCCCAAGGTGAAGGGAGTG
GATGACGTGACGGGCGAGAAGCTGGTGCAACGGGAGGACGACAAGGCTGA
GACGGTCAAGGCACGTCTAGATCAATACAAACGTGTAACATCGCCATTGA
TCGACCACTATAAGTATGCGGGAAATCTGGCGACATTTGCGGGGACGGAG
TCGGATGTGATTTATCCCAAGGTCAAGGCCTATCTGACAGAGTTTTTGGC
CAAGCGGAGTTAGGAGCGGAACCGAGCCAGGGAGGGGGGGAGACAAGCGG
AGATGAGGGTGAAGGGGAGAGTATGACACTAGCATTTATTTCGTTTATAT
TCCATTTGTGTTAAAATACTGTGCTTGTGG
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protein sequence of jgi.p|Nanoce1779_2|579384

>mRNA_2181-protein ID=mRNA_2181-protein|Name=jgi.p|Nanoce1779_2|579384|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MVDLVVEELASKGHMPRLLLDGFPRTIPQAIALEQHVKIDTVIDLEIPDQ
TIIERISNRWIHAASGRTYAYDYNPPKVKGVDDVTGEKLVQREDDKAETV
KARLDQYKRVTSPLIDHYKYAGNLATFAGTESDVIYPKVKAYLTEFLAKR
S*
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mRNA from alignment at scaffold_4:983983..985312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2181 ID=mRNA_2181|Name=jgi.p|Nanoce1779_2|579384|organism=Nannochloropsis oceanica|type=mRNA|length=1330bp|location=Sequence derived from alignment at scaffold_4:983983..985312- (Nannochloropsis oceanica)
GTACTCTGCTAGATGGACAATCAAACCTACATTCTCCAAATGGACAAACC
AGCCCCGACGTAGTCTCGTCTTGTCCATCTGTAAGCCTGGTGCTGAAGGG
TACTCTTTGGTTATCAAAGCTGGCTTGCCCTGTCCTTCGAGCTGAGATCA
AGCAAAGCCTCCCCTCCCCAACAAGTGCTTGCGCTTGTACATTTACCGCC
CTACTACCCCCACAATCACATACAGCTTCGTTATGGGTAGCGTAAAGGGG
CTGAAAGGCCTCACCGCCCTTATCTTGGGCCCGCCCGGCGGAGGGAAAGG
CACGATTAGCAAGAAGCTGCTCAAGGAGTTTGGCTTCCTACATTTCTCCA
CGGGAGACGTCTTGCGGAAGCACGTCCGAGAGCAGACGGCGGTCGGCATG
GCGGCCCAGAAGTTTATGCTCACAGGTATTTTTGGTGGGCCTTGATAGGA
TAGATATGGACGGGCTGCTGCTGAGGGCGTGGAGAGGGGAGGGAGGGACG
GCGGAGTTTTTTGTTCTCCAACTAGCATACTGATGGATGTACGTGCGCGT
GAATGTGGGTATGCTTATGCATGAACGCAATGGGCAATTTCCTGGCTAAA
GATAGGATGGAGGCAAGGGGCGCTCTCAAAAGAAGGGAGCTGGGATCTAT
CTTTTTCTCATTGCGCTCTCTTAAAGCCTCTCCACACCCACCCCACTCAT
CCTCCCTCCCTCCCAATTAATCTTACGCACGTAGGTGCTTTAGTCCCTGA
CAAGGTTATGGTGGACCTAGTAGTGGAAGAGCTGGCATCCAAGGGCCACA
TGCCTCGCCTGCTTCTGGATGGATTCCCGCGCACCATTCCTCAAGCCATC
GCGTTGGAGCAGCACGTGAAAATTGACACGGTCATTGACCTTGAAATACC
GGACCAGACAATCATCGAGCGGATTTCGAACCGATGGATCCACGCCGCAT
CGGGACGGACGTATGCGTATGACTACAACCCGCCCAAGGTGAAGGGAGTG
GATGACGTGACGGGCGAGAAGCTGGTGCAACGGGAGGACGACAAGGCTGA
GACGGTCAAGGCACGTCTAGATCAATACAAACGTGTAACATCGCCATTGA
TCGACCACTATAAGTATGCGGGAAATCTGGCGACATTTGCGGGGACGGAG
TCGGATGTGATTTATCCCAAGGTCAAGGCCTATCTGACAGAGTTTTTGGC
CAAGCGGAGTTAGGAGCGGAACCGAGCCAGGGAGGGGGGGAGACAAGCGG
AGATGAGGGTGAAGGGGAGAGTATGACACTAGCATTTATTTCGTTTATAT
TCCATTTGTGTTAAAATACTGTGCTTGTGG
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Coding sequence (CDS) from alignment at scaffold_4:983983..985312-

>mRNA_2181 ID=mRNA_2181|Name=jgi.p|Nanoce1779_2|579384|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_4:983983..985312- (Nannochloropsis oceanica)
ATGGTGGACCTAGTAGTGGAAGAGCTGGCATCCAAGGGCCACATGCCTCG
CCTGCTTCTGGATGGATTCCCGCGCACCATTCCTCAAGCCATCGCGTTGG
AGCAGCACGTGAAAATTGACACGGTCATTGACCTTGAAATACCGGACCAG
ACAATCATCGAGCGGATTTCGAACCGATGGATCCACGCCGCATCGGGACG
GACGTATGCGTATGACTACAACCCGCCCAAGGTGAAGGGAGTGGATGACG
TGACGGGCGAGAAGCTGGTGCAACGGGAGGACGACAAGGCTGAGACGGTC
AAGGCACGTCTAGATCAATACAAACGTGTAACATCGCCATTGATCGACCA
CTATAAGTATGCGGGAAATCTGGCGACATTTGCGGGGACGGAGTCGGATG
TGATTTATCCCAAGGTCAAGGCCTATCTGACAGAGTTTTTGGCCAAGCGG
AGTTAG
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Synonyms
Publications