jgi.p|Nanoce1779_2|576583, mRNA_218 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576583
Unique NamemRNA_218
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1309
Alignment locationscaffold_3:551075..552383 +

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Properties
Property NameValue
TranscriptId576669
TrackFilteredModels2
ProteinId576583
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:551075..552383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576583gene_218Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576583mRNA_218-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_218CDS_218Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_218 ID=mRNA_218|Name=jgi.p|Nanoce1779_2|576583|organism=Nannochloropsis oceanica|type=mRNA|length=1309bp
CACTCTTACGGGCGAGCTTCACGTTTCGGTCATGCGTTTTCTCTTTACTC
TTTCCCCAAAACAAAATTTACGAACCCTTCATTTTGGCAACGCTGCCTAG
GAGGATTACAAATGGTCGGCTTCCATTCTTCAAGAGGCTCGCATCATCTA
TTTTATTCCCTTTAGAATAGTAGTAACTAATGCCAGCAGGTCACGTTCGC
ACTCAGAGCCACGGTTTTCCCTACGCTGAGTAGATCTGCAGTGCTCCAGA
CTGCAAAGTCGATTCGCTGATTAAACTGAATGGCACTTCGTGGTTGCGCA
GCGAGGGTGTTGACATCCACGAAAAGGTGCGGAACAGCCGCCGCACATAC
ATAGTCAGCGGTGGTGCGCCCATCGATATCCTCATCATTCGCCAGAGCCC
CATGCAGGAAGTGTAAAGCGAGCATATCGTGTATAATGTACAGCTAAACG
GATCGTTTCAGGCAAGGAAGAACGGTCAATAGCAAATAAGAGGGTTTATG
CCAATCAGGAAATGCGGTCGTCAACGCTAGAAGGACAATCGGCAGGGGCC
GCAGAGAAACCATTATGGTTATGTTGGTGGTCCTTGACTTGCCTGGTAAA
AATCTTTATATGTGGGGTTGCACCTACGCAGTGCGAAGTCGATTTCTTAA
GTGTTGCTCGAGCTTTGACTGATGCTCCTTTTCTCAGGCAAGGGATGGGG
AGTAAATTATGCCACCTAGACTCGATACGGGAGCAAGCAAGGTTCTGTCA
CTGGCCGCTAGATTAGTGCGCATTCACGCGTGCGTGGTCGTGTTGAAGGT
GCCTTGTGCTACTGAAGGCTTGAGACCTCGTTTCGCTCACGGGCACAAGG
GGACCAACATCTTGGAAGGGGTTACGGACGCATGTTTTAGCGAAGTGCAT
CGGAGCGTAGCACAGCCCGTTAGGCAGGAAACTCTCAGGCCCTCGCTGAC
CGGGCCCTGACGGGACTATCCGCCCCGCAAAATTTCAAGATACTTCCATA
GAAAAGAATTAAGATATACGTGTTGGGTACATAATCGTAAATTGGTAAGA
AAACATGGCAGGTGAGGACTGAATGTTTAGATGGCCGTCCTTTGCTTTGC
CGTCCTTTGCTTTTCTCGCGCGCTGCATAATTTCAGAGTGATCTTGCGTG
GCGATTGCGCCGACCTCCTAAATAAAGGACACTTTTTTACCTTAGCTCAC
ATCTTAACCCCTACCCTGGACACAATCACAGCGCCCACCAGCATGCGGGC
CCTTTTGCTTTTGGTGGTCTCCGCGTGCTTGGCCACCGCTTTTTTGCAGC
CACACTTCT
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protein sequence of jgi.p|Nanoce1779_2|576583

>mRNA_218-protein ID=mRNA_218-protein|Name=jgi.p|Nanoce1779_2|576583|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MRSSTLEGQSAGAAEKPLWLCWWSLTCLVKIFICGVAPTQCEVDFLSVAR
ALTDAPFLRQGMGSKLCHLDSIREQARFCHWPLD*
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mRNA from alignment at scaffold_3:551075..552383+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_218 ID=mRNA_218|Name=jgi.p|Nanoce1779_2|576583|organism=Nannochloropsis oceanica|type=mRNA|length=1309bp|location=Sequence derived from alignment at scaffold_3:551075..552383+ (Nannochloropsis oceanica)
CACTCTTACGGGCGAGCTTCACGTTTCGGTCATGCGTTTTCTCTTTACTC
TTTCCCCAAAACAAAATTTACGAACCCTTCATTTTGGCAACGCTGCCTAG
GAGGATTACAAATGGTCGGCTTCCATTCTTCAAGAGGCTCGCATCATCTA
TTTTATTCCCTTTAGAATAGTAGTAACTAATGCCAGCAGGTCACGTTCGC
ACTCAGAGCCACGGTTTTCCCTACGCTGAGTAGATCTGCAGTGCTCCAGA
CTGCAAAGTCGATTCGCTGATTAAACTGAATGGCACTTCGTGGTTGCGCA
GCGAGGGTGTTGACATCCACGAAAAGGTGCGGAACAGCCGCCGCACATAC
ATAGTCAGCGGTGGTGCGCCCATCGATATCCTCATCATTCGCCAGAGCCC
CATGCAGGAAGTGTAAAGCGAGCATATCGTGTATAATGTACAGCTAAACG
GATCGTTTCAGGCAAGGAAGAACGGTCAATAGCAAATAAGAGGGTTTATG
CCAATCAGGAAATGCGGTCGTCAACGCTAGAAGGACAATCGGCAGGGGCC
GCAGAGAAACCATTATGGTTATGTTGGTGGTCCTTGACTTGCCTGGTAAA
AATCTTTATATGTGGGGTTGCACCTACGCAGTGCGAAGTCGATTTCTTAA
GTGTTGCTCGAGCTTTGACTGATGCTCCTTTTCTCAGGCAAGGGATGGGG
AGTAAATTATGCCACCTAGACTCGATACGGGAGCAAGCAAGGTTCTGTCA
CTGGCCGCTAGATTAGTGCGCATTCACGCGTGCGTGGTCGTGTTGAAGGT
GCCTTGTGCTACTGAAGGCTTGAGACCTCGTTTCGCTCACGGGCACAAGG
GGACCAACATCTTGGAAGGGGTTACGGACGCATGTTTTAGCGAAGTGCAT
CGGAGCGTAGCACAGCCCGTTAGGCAGGAAACTCTCAGGCCCTCGCTGAC
CGGGCCCTGACGGGACTATCCGCCCCGCAAAATTTCAAGATACTTCCATA
GAAAAGAATTAAGATATACGTGTTGGGTACATAATCGTAAATTGGTAAGA
AAACATGGCAGGTGAGGACTGAATGTTTAGATGGCCGTCCTTTGCTTTGC
CGTCCTTTGCTTTTCTCGCGCGCTGCATAATTTCAGAGTGATCTTGCGTG
GCGATTGCGCCGACCTCCTAAATAAAGGACACTTTTTTACCTTAGCTCAC
ATCTTAACCCCTACCCTGGACACAATCACAGCGCCCACCAGCATGCGGGC
CCTTTTGCTTTTGGTGGTCTCCGCGTGCTTGGCCACCGCTTTTTTGCAGC
CACACTTCT
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Coding sequence (CDS) from alignment at scaffold_3:551075..552383+

>mRNA_218 ID=mRNA_218|Name=jgi.p|Nanoce1779_2|576583|organism=Nannochloropsis oceanica|type=CDS|length=255bp|location=Sequence derived from alignment at scaffold_3:551075..552383+ (Nannochloropsis oceanica)
ATGCGGTCGTCAACGCTAGAAGGACAATCGGCAGGGGCCGCAGAGAAACC
ATTATGGTTATGTTGGTGGTCCTTGACTTGCCTGGTAAAAATCTTTATAT
GTGGGGTTGCACCTACGCAGTGCGAAGTCGATTTCTTAAGTGTTGCTCGA
GCTTTGACTGATGCTCCTTTTCTCAGGCAAGGGATGGGGAGTAAATTATG
CCACCTAGACTCGATACGGGAGCAAGCAAGGTTCTGTCACTGGCCGCTAG
ATTAG
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Synonyms
Publications