jgi.p|Nanoce1779_2|660072, mRNA_2179 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|660072
Unique Name	mRNA_2179
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	662
Alignment location	scaffold_4:976520..978785 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	660158
Track	FilteredModels2
ProteinId	660072

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:976520..978785 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|660072	gene_2179	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|660072	mRNA_2179-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2179	CDS_2179	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:976520..978785+
coding sequence from alignment at scaffold_4:976520..978785+

mRNA sequence

>mRNA_2179 ID=mRNA_2179|Name=jgi.p|Nanoce1779_2|660072|organism=Nannochloropsis oceanica|type=mRNA|length=662bp
ATGTCCGAGGGTGGTCAAGGGATGATGGCCGCTGCCAAGCCACTTTCTGG
CCGGTCCCTATACATCCTAAATGGGGCTGACAAGATCTGCTACGACGCGT
TTTACGGCACCCGCAAACCTGCCGTGATGTACCTGCCCTGCCTCTTCTAT
CCCAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGGGGAGGAGGAGGA
GGAGGAGGAGGCGGGGGAGGAGGAGGAGGAGGCGGAGGCGGAGGAGGCGG
AGGAGGAGGCGGAGGCGGAGGAGGCGGAGGAGGAGGGGGTGGAATTAGAG
GAGAAAGAGGCGGAGGAGAACGAGGCCGAGGCGGAGGAGGACGAGGACGA
GGCAGAGGAGGAGGTCATGGGCGGGCCATCCGAGGACTGTATTGGTGTGA
CACCTGTGAACATCCTCGAGGACGTCAGGTTGCATGCGATAGTTCTAGAG
CACTTTTGCATGGCGTCATCAATATCTCCTTTTGTCATCAACATGAAACC
CACTTCTACTAGTTAGTGGTAGGATATGGGAAGCTATCCTTATAAACTGA
GAGCAACAAGCACCGAAGGGGTCAGCAGCTAGAGGCAAAGGACCGAGCGA
GTTTGATGGCTTTTTGTCCGCGTTTATCCTGCCTGTTCCACGTTTTCGCT
CCTACTTCAGCA

protein sequence of jgi.p|Nanoce1779_2|660072

>mRNA_2179-protein ID=mRNA_2179-protein|Name=jgi.p|Nanoce1779_2|660072|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MSEGGQGMMAAAKPLSGRSLYILNGADKICYDAFYGTRKPAVMYLPCLFY
PKEEEEEEEEEAGEEEEEEEAGEEEEEAEAEEAEEEAEAEEAEEEGVELE
EKEAEENEAEAEEDEDEAEEEVMGGPSEDCIGVTPVNILEDVRLHAIVLE
HFCMASSISPFVINMKPTSTS*

mRNA from alignment at scaffold_4:976520..978785+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2179 ID=mRNA_2179|Name=jgi.p|Nanoce1779_2|660072|organism=Nannochloropsis oceanica|type=mRNA|length=2266bp|location=Sequence derived from alignment at scaffold_4:976520..978785+ (Nannochloropsis oceanica)
ATGTCCGAGGGTGGTCAAGGGGTACGCACGTAGTCGCAGAGCAGCGATGT
GAAGCCTCGTCGAGTTGCCGTGGATGACAAGGGAGGAAGTTAAGGTATGA
GAAGTGGTGGTTGGTTTGGATGGTAGCGTCGGGGCTATGGAACTGGGGAG
CGTGGAGAGGGGCACATGCCAGTTTGCTTTCGAAAGCATCTCATTTCCTC
CTTCCCTCCCTTCTTTCCCTTTCCCCTTCATTTCTCTATAGATGATGGCC
GCTGCCAAGCCACTTTCTGGCCGGTCCCTATACATCCTAAATGGGGCTGA
CAAGATCTGCTACGACGCGTTTTACGGCACCCGCAAACCTGCCGTGATGT
ACCTGCCCTGCCTCTTCTATCCCAAGGTACCAGCGGTCCGCATAAAGACG
GGCACGTGGGGAGGAGGAGAGGAGGAGGAGAAGGAGACGAAGGGGGGAAT
GGGAAGGAGGAGGAAGAGAAATGGAGCTGATGAAGTGAGGAAGGAAGGTC
GAAAGAGATGAAGAATCCTATTGATAAGAGCACACTTGAGGAGGGCAGAA
CTGTCATTCTTGTTGTCGTGCAGCGCTCGCGTGGCCTGATGTTGAAGTAA
AAGGCGCATCCGTAGAGACTTCACACTGGCTGGGTCGGGGGTACATTTGG
AAACAAGGAGGGAGGGAGGAATGGACAAAAGAAGGGAGGGAGGGAGGAAG
GGAGGAATGAGTGAGTGCCTGGACCTCGAACGGATGGACTGTCTATCAAA
CTGTCAACTTACATTCGACGAGCGAGAAGGAACGGGGAGAAGCAGGTGTG
AAGATAAGGTGGGAGAAAGGGAGATGTAAGGCGTTTTTGGATAATATGCT
TGGAAAGCTCCCGCAAATATAGAGGTCGACATACTCTCGCCCTTAAGGCA
TCAGTCCAATGGGCCAGCAGCTCCAGGCGCTCAAATAGTATTGTTGACCC
ATTCGCTGGCCTTCCCGTCGCATCCTACCTTCCCACTTCCGTCCCTTTCT
CCTCTTCTGCCTTAACCTCTGTCCCTCCACTTTTATGGGCGGGCAAAGAC
AGAGTTGCTATCACCTTTTCCATCTCCAGCCTCATTACCTCCCCCATTCC
CTTCGTCTACTTGCCTGAAGAATGATTAGATTAGGATTATTTACCCTTTT
AGTTACATCGATCAATGTGAAAACCTTGTTTTTGGGTTCCTCTCGTCTTG
CTGCGCACGGTGGTGGCCGTCTCGCAAGGCAAATCGTTTTACTTCACGAG
ATATTCTGTTTTTGGTGCCATGCCCTTGTAACACGCGATAAGGCCGTCAA
CGCCCCACCAACTCCCTACCATACCATCCCAATTAATCAGTAGCGAAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGCGGGGGAGGAGGAGGAGGAGGAGG
AGGCGGGGGAGGAGGAGGAGGAGGCGGAGGCGGAGGAGGCGGAGGAGGAG
GCGGAGGCGGAGGAGGCGGAGGAGGAGGGGGTGGAATTAGAGGAGAAAGA
GGCGGAGGAGAACGAGGCCGAGGCGGAGGAGGACGAGGACGAGGCAGAGG
AGGAGGTCATGGGCGGGCCATCCGAGGACTGTATTGGTGTGACACCTGTG
AACAGTTCGTGTCTCGGGACGGCAATGGGGCACGTAATATCCTACGGGTG
TGCAGGAGTATGGTCCGTGGGGAGGCTCGTCCCCATGATCTTCGGTTTGG
TCAGCCGCGGCAGGACATGCGGACACTCTATGTGTAGCCTTCCCGCTGAC
CTCCTCTTTTATCCTCCTTCCCCTTCTCCTCCTGGCCCTGTGTGGGCCGT
CCGGGGACTTTGCCAGGTCATAAAACCAGTCAAAGTCGCTAGAAATCTCG
GACAAGGAAATAAGGGATGACAACAATTTATTGTTGGGAGGCTCCCCCTC
GTATGCAAGTCCTCGAGGACGTCAGGTTGCATGCGATAGTTCTAGAGGTA
TGTAGGAACGCTCAAAAAGAACTAGATGGCTTGTCAAAAAAAAAAAAAAA
AAAAAACAAACCAAGCCTCCCTCCGCTGGACCATTCTCCTATCCTTTTCC
ACAGCACTTTTGCATGGCGTCATCAATATCTCCTTTTGTCATCAACATGA
AACCCACTTCTACTAGTTAGTGGTAGGATATGGGAAGCTATCCTTATAAA
CTGAGAGCAACAAGCACCGAAGGGGTCAGCAGCTAGAGGCAAAGGACCGA
GCGAGTTTGATGGCTTTTTGTCCGCGTTTATCCTGCCTGTTCCACGTTTT
CGCTCCTACTTCAGCA

Coding sequence (CDS) from alignment at scaffold_4:976520..978785+

>mRNA_2179 ID=mRNA_2179|Name=jgi.p|Nanoce1779_2|660072|organism=Nannochloropsis oceanica|type=CDS|length=2580bp|location=Sequence derived from alignment at scaffold_4:976520..978785+ (Nannochloropsis oceanica)
ATGTCCGAGGGTGGTCAAGGGATGATGGCCGCTGCCAAGCCACTTTCTGG
CCGGTCCCTATACATCCTAAATGGGGCTGACAAGATCTGCTACGACGCGT
TTTACGGCACCCGCAAACCTGCCGTGATGTACCTGCCCTGCCTCTTCTAT
CCCAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGGGGAGGAGGAGGA
GGAGGAGGAGGCGGGGGAGGAGGAGGAGGAGGCGGAGGCGGAGGAGGCGG
AGGAGGAGGCGGAGGCGGAGGAGGCGGAGGAGGAGGGGGTGGAATTAGAG
GAGAAAGAGGCGGAGGAGAACGAGGCCGAGGCGGAGGAGGACGAGGACGA
GGCAGAGGAGGAGGTCATGGGCGGGCCATCCGAGGACTGTATTGGTGTGA
CACCTGTGAACATCCTCGAGGACGTCAGGTTGCATGCGATAGTTCTAGAG
CACTTTTGCATGGCGTCATCAATATCTCCTTTTGTCATCAACATGAAACC
CACTTCTACTAGTTAGATGTCCGAGGGTGGTCAAGGGATGATGGCCGCTG
CCAAGCCACTTTCTGGCCGGTCCCTATACATCCTAAATGGGGCTGACAAG
ATCTGCTACGACGCGTTTTACGGCACCCGCAAACCTGCCGTGATGTACCT
GCCCTGCCTCTTCTATCCCAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
CGGGGGAGGAGGAGGAGGAGGAGGAGGCGGGGGAGGAGGAGGAGGAGGCG
GAGGCGGAGGAGGCGGAGGAGGAGGCGGAGGCGGAGGAGGCGGAGGAGGA
GGGGGTGGAATTAGAGGAGAAAGAGGCGGAGGAGAACGAGGCCGAGGCGG
AGGAGGACGAGGACGAGGCAGAGGAGGAGGTCATGGGCGGGCCATCCGAG
GACTGTATTGGTGTGACACCTGTGAACATCCTCGAGGACGTCAGGTTGCA
TGCGATAGTTCTAGAGCACTTTTGCATGGCGTCATCAATATCTCCTTTTG
TCATCAACATGAAACCCACTTCTACTAGTTAGATGTCCGAGGGTGGTCAA
GGGATGATGGCCGCTGCCAAGCCACTTTCTGGCCGGTCCCTATACATCCT
AAATGGGGCTGACAAGATCTGCTACGACGCGTTTTACGGCACCCGCAAAC
CTGCCGTGATGTACCTGCCCTGCCTCTTCTATCCCAAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGCGGGGGAGGAGGAGGAGGAGGAGGAGGCGGGGGA
GGAGGAGGAGGAGGCGGAGGCGGAGGAGGCGGAGGAGGAGGCGGAGGCGG
AGGAGGCGGAGGAGGAGGGGGTGGAATTAGAGGAGAAAGAGGCGGAGGAG
AACGAGGCCGAGGCGGAGGAGGACGAGGACGAGGCAGAGGAGGAGGTCAT
GGGCGGGCCATCCGAGGACTGTATTGGTGTGACACCTGTGAACATCCTCG
AGGACGTCAGGTTGCATGCGATAGTTCTAGAGCACTTTTGCATGGCGTCA
TCAATATCTCCTTTTGTCATCAACATGAAACCCACTTCTACTAGTTAGAT
GTCCGAGGGTGGTCAAGGGATGATGGCCGCTGCCAAGCCACTTTCTGGCC
GGTCCCTATACATCCTAAATGGGGCTGACAAGATCTGCTACGACGCGTTT
TACGGCACCCGCAAACCTGCCGTGATGTACCTGCCCTGCCTCTTCTATCC
CAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGGGGAGGAGGAGGAGG
AGGAGGAGGCGGGGGAGGAGGAGGAGGAGGCGGAGGCGGAGGAGGCGGAG
GAGGAGGCGGAGGCGGAGGAGGCGGAGGAGGAGGGGGTGGAATTAGAGGA
GAAAGAGGCGGAGGAGAACGAGGCCGAGGCGGAGGAGGACGAGGACGAGG
CAGAGGAGGAGGTCATGGGCGGGCCATCCGAGGACTGTATTGGTGTGACA
CCTGTGAACATCCTCGAGGACGTCAGGTTGCATGCGATAGTTCTAGAGCA
CTTTTGCATGGCGTCATCAATATCTCCTTTTGTCATCAACATGAAACCCA
CTTCTACTAGTTAGATGTCCGAGGGTGGTCAAGGGATGATGGCCGCTGCC
AAGCCACTTTCTGGCCGGTCCCTATACATCCTAAATGGGGCTGACAAGAT
CTGCTACGACGCGTTTTACGGCACCCGCAAACCTGCCGTGATGTACCTGC
CCTGCCTCTTCTATCCCAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCG
GGGGAGGAGGAGGAGGAGGAGGAGGCGGGGGAGGAGGAGGAGGAGGCGGA
GGCGGAGGAGGCGGAGGAGGAGGCGGAGGCGGAGGAGGCGGAGGAGGAGG
GGGTGGAATTAGAGGAGAAAGAGGCGGAGGAGAACGAGGCCGAGGCGGAG
GAGGACGAGGACGAGGCAGAGGAGGAGGTCATGGGCGGGCCATCCGAGGA
CTGTATTGGTGTGACACCTGTGAACATCCTCGAGGACGTCAGGTTGCATG
CGATAGTTCTAGAGCACTTTTGCATGGCGTCATCAATATCTCCTTTTGTC
ATCAACATGAAACCCACTTCTACTAGTTAG

Synonyms

Publications