jgi.p|Nanoce1779_2|579356, mRNA_2175 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579356
Unique NamemRNA_2175
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length904
Alignment locationscaffold_4:967908..968811 +

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Properties
Property NameValue
TranscriptId579442
TrackFilteredModels2
ProteinId579356
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:967908..968811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579356gene_2175Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579356mRNA_2175-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2175CDS_2175Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2175 ID=mRNA_2175|Name=jgi.p|Nanoce1779_2|579356|organism=Nannochloropsis oceanica|type=mRNA|length=904bp
TGATGGTACGTCCCAGCGTTGACAAGTAGATGGGGGGCGCTGAAGAGGGA
CGCACAGGCACTAGCGCCGTTGGGTGGTGAAATCGCTGTCGTCGTATGCC
GTACGTCGCCAACAAGCGCGCCAAGCTCCGAGTCCATCCCATCACAAATA
CGCGTCGCCTTCTTTGTCTTGCTTGCCTAGTACTGCAAGCGCTGCAGCAA
CCACGCCACCTCTACCCTCACTCTTCTCTTCACATTCTTCATTTCTCCCA
ACGCACAGGCCGCTTTCTTGCTTCTCCCTTTCAGCAAGCCGCTTCTGTCC
AACCTGGAAGATACAAAGCACCATGACCATGCCCTGCCGCCGCTCACCTT
CGTCTGTACTGCTACTCTTCCTCGCCTGTTTCATGGCCCTTACATGCCAA
GGCTTTCTTGTGGCCTCCCCCTCCTCGTCTCTCATTAGCTTCCGCCGGAC
AGCGAGAACCTCATTGACAGCAGCCGCCGATGGTGCCGTAGCGGGCGAGG
TGGGGGCTGTGGAGTCCTGCCGTATCAAGATCCAAGCGGCCTTGTCACCC
GTAGAATTGGTGGTCAAGTCTTCGAATGACGACCCAAATGGAAGCCATAT
TGCTTTGCGTGTGATCTCGGCGGCGTTTGAGGGGAAGAATCGGGTGCAGC
GGCAGCAGGTGGTGTACAAAGCGATCTGGGAGGAGTTGTCCGGGCCGATT
CATGCTGTAGACGAGTTGGTGTGCCGGACACCTGCGGAGGAAGGGATGTA
AATGAGATAGATATAGAGCGATATTGATATGATTCGATCGGAAGCGGTGG
TGAGTGTGTGAGTGTGAGTGCTTACGGAAGGCTACAGAGTGAGATTGACG
TGCTCTCCTTTTTCGTTGACAACCACGTAGATAAAACAGACACGCCGTTT
GAAC
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protein sequence of jgi.p|Nanoce1779_2|579356

>mRNA_2175-protein ID=mRNA_2175-protein|Name=jgi.p|Nanoce1779_2|579356|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MTMPCRRSPSSVLLLFLACFMALTCQGFLVASPSSSLISFRRTARTSLTA
AADGAVAGEVGAVESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISA
AFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAEEGM*
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mRNA from alignment at scaffold_4:967908..968811+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2175 ID=mRNA_2175|Name=jgi.p|Nanoce1779_2|579356|organism=Nannochloropsis oceanica|type=mRNA|length=904bp|location=Sequence derived from alignment at scaffold_4:967908..968811+ (Nannochloropsis oceanica)
TGATGGTACGTCCCAGCGTTGACAAGTAGATGGGGGGCGCTGAAGAGGGA
CGCACAGGCACTAGCGCCGTTGGGTGGTGAAATCGCTGTCGTCGTATGCC
GTACGTCGCCAACAAGCGCGCCAAGCTCCGAGTCCATCCCATCACAAATA
CGCGTCGCCTTCTTTGTCTTGCTTGCCTAGTACTGCAAGCGCTGCAGCAA
CCACGCCACCTCTACCCTCACTCTTCTCTTCACATTCTTCATTTCTCCCA
ACGCACAGGCCGCTTTCTTGCTTCTCCCTTTCAGCAAGCCGCTTCTGTCC
AACCTGGAAGATACAAAGCACCATGACCATGCCCTGCCGCCGCTCACCTT
CGTCTGTACTGCTACTCTTCCTCGCCTGTTTCATGGCCCTTACATGCCAA
GGCTTTCTTGTGGCCTCCCCCTCCTCGTCTCTCATTAGCTTCCGCCGGAC
AGCGAGAACCTCATTGACAGCAGCCGCCGATGGTGCCGTAGCGGGCGAGG
TGGGGGCTGTGGAGTCCTGCCGTATCAAGATCCAAGCGGCCTTGTCACCC
GTAGAATTGGTGGTCAAGTCTTCGAATGACGACCCAAATGGAAGCCATAT
TGCTTTGCGTGTGATCTCGGCGGCGTTTGAGGGGAAGAATCGGGTGCAGC
GGCAGCAGGTGGTGTACAAAGCGATCTGGGAGGAGTTGTCCGGGCCGATT
CATGCTGTAGACGAGTTGGTGTGCCGGACACCTGCGGAGGAAGGGATGTA
AATGAGATAGATATAGAGCGATATTGATATGATTCGATCGGAAGCGGTGG
TGAGTGTGTGAGTGTGAGTGCTTACGGAAGGCTACAGAGTGAGATTGACG
TGCTCTCCTTTTTCGTTGACAACCACGTAGATAAAACAGACACGCCGTTT
GAAC
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Coding sequence (CDS) from alignment at scaffold_4:967908..968811+

>mRNA_2175 ID=mRNA_2175|Name=jgi.p|Nanoce1779_2|579356|organism=Nannochloropsis oceanica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_4:967908..968811+ (Nannochloropsis oceanica)
ATGACCATGCCCTGCCGCCGCTCACCTTCGTCTGTACTGCTACTCTTCCT
CGCCTGTTTCATGGCCCTTACATGCCAAGGCTTTCTTGTGGCCTCCCCCT
CCTCGTCTCTCATTAGCTTCCGCCGGACAGCGAGAACCTCATTGACAGCA
GCCGCCGATGGTGCCGTAGCGGGCGAGGTGGGGGCTGTGGAGTCCTGCCG
TATCAAGATCCAAGCGGCCTTGTCACCCGTAGAATTGGTGGTCAAGTCTT
CGAATGACGACCCAAATGGAAGCCATATTGCTTTGCGTGTGATCTCGGCG
GCGTTTGAGGGGAAGAATCGGGTGCAGCGGCAGCAGGTGGTGTACAAAGC
GATCTGGGAGGAGTTGTCCGGGCCGATTCATGCTGTAGACGAGTTGGTGT
GCCGGACACCTGCGGAGGAAGGGATGTAA
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Synonyms
Publications