|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 579423 |
| Track | FilteredModels2 |
| ProteinId | 579337 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:962412..965863 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2172 ID=mRNA_2172|Name=jgi.p|Nanoce1779_2|579337|organism=Nannochloropsis oceanica|type=mRNA|length=2847bp
ACAGATAAGTTAAGCTGCTCGCGGTTTTGTTCGGGAGGAAGAGGGCATGG
AGCAAGCGAGAGCGAGAAGTGAGGCGAGGGAGAGAGACGTCATGGCGCCA
CGGGACTTGGCTTTGCGCTGGTCATACGCATTGTTCAAGGGCTCTTGATG
TCATGGAAGATGCAGACATGCGGAAAGCAGGGTGTGCACGCGATTTGGGA
TATGAATGTGTGCAGGGAGAGTGAAAATCACGCGACTGGCAGGCTAGATT
TCTCGACGCACCCCCACCCGCTGTACCACCAGTTTCCAGACTTGCTCATC
TGCCTTCTTCAGGCTATGATGAGGCATCGCTGCATCTTGCGCTATACGTT
TCCACTCCGCTCCCTCAACATCCACGCATGCAACCCAACCATACCACAGA
AGCAAAAGACAAGCCCACCATGCCGGCCGCGACCACCTCTTTGTGAGCGC
GTATGTCGTCGTCGTCGTTTCATCACCAGCAACTGAGGAAGGAAGAGCAA
GAATCCTTGGTAGCTTGACAAGGGGAAGGGAGGGAGGAGAGGGAAGGGAG
AGGGAAATGACGATTAATCTCTGGACCCTCCTTTGGTCCTGCGCCCGTAA
CGAAGAAATGGATTAGTTTTGGAGGAGACGAACATGCGTCGCCCTCTTTG
CCGCTGCGTCTCGTGCCCCTTTTTTTACATGACACAAGGGCATGCAGAGT
GTGAATGACCATGAGGTGGCGAATCAGCGACTCGCTATGCTTGTCATCCA
CTCCCGGATTAGTCAGCGCCTTTCCCTTCATGGCGTATGGACAGACGTGT
CGATGATTGTTACGCGTGGAAGTGAACATGATTTGATGGAGAACAGAGAT
CATCCCAGCCGCCTCATGTCGTCACACGCATGACGTGCATCCTTTCACTC
GTGGTTGAAGGACGCATGCAAAACTGCTTGACCTGTTTCAACTCTTATTA
GAATTGCGTAGAAGATTAGAAGAGCCTTTGCGTTAATGCCACGGTGCATG
ATGGATGACGTGCGAATACTCGTGGCCATCGTCTTGTATGTATGCCTTGG
GCGATCCTTCGATTCCATCGCACTTATAAATCCCTCCCTCGCCTCTCTCC
CTCCCTTCACCCGTTTTTACCCGCCCATAGCTCCTACGCCCGCATCAATC
CCACCCCACGGCCTCCCTTCCTGCCGCCGCCATGGCTGAAATCTTTGAAT
CCTACGAGGACGAGTTCCGCTCCCTCGCCTCAGACTGCCAGAAGAATCTC
TCCGACCTGCTCACTTACGAGACGAACCGCGACAAAAGGATGGCCCTCCT
CCAACTAGCCACCCCTCAAGTCGCCCAACTGGAAGGTATCATCAAGCAAA
TGAAGGTGGAGGTGCGTTCGCAAGACCCCGCCACCAAAGCTGCTCTCAGC
ATCAAGGTTCAATCCTATGAAAAGGCCTTGGCAGGGGTGAAGAGTGACTT
GGGGAAGGCCCGCGAGAGGGAAGAAAAAGACGCCCTGTTTGGGGGGGGGC
GTGCTGGCGGAGGGGCAGGGGCGATGGCGCAACGCCAGAGGTTGTTGGAG
ACAAATGAGCGGCTGGCGAATCAAAATCGAACGATCGAGAATGCAAGGAA
GGTGATGGCAGAAACGGAGCAAGTTGGCATTCAGATCGGGGAGGAGCTGG
ATTCAAACAGGGAGAAGATTCAGAACATTCGCGGCAAGGTGAGCGAAGTG
CAGGGCCTAGCCGGTCAGGCGAAGAAATTAGTCAAGGACATGGGAAAGCG
ATGGTTCTAACCCGCTCACGCACTATACGTATATATATATATATATATAT
ATTATTCCTCCTCTGAAGAGCCGTGCTGCTGCTGGCGGATGGATGGGAAG
GGAGGAGGGCAAGGGCGCGACGATGTCATTTTCGCCTCCCCCCTCTCCTT
CATCGTTTCCCAAGCTCACTTATGCGTGTAAAATTTTGTGCATATACTGT
GCCTGTGCGTTTTTTGATTGCACAAGCGAATCGTACATGACCATCTTCAA
CCCACCGTCCGTCCTTCCTCCTCTTCCTCTCCCTCTCCTTCTACCTCTTC
ATCCATCCCTTCTTGAATCCAGGTCTCGGAGGTGGGTGGACTAACCAACA
CAGCCCGGCGACTCATCTCCAATATTAGCCGGCGAGAAACTCAGCAGAAA
ATGCTATTATGGGGCGTGGCGGGTTCCTTGTTTATCGCTATTATCCTGAT
CATTTATTACTCGTCACGGTAGAGAAGCAGAGGGGAAGGGAAGGAGGATC
GAGAGAGGGTGAGGCCTTACATGATCGTATACCTTAATCTTTTCAATAAT
TCAGGTGTATTCTCGTGACCTGCATGTAATACAAAAGCAACTACAGGAGG
GGTTGTACAAAAGAAAGATAAATTAATGAGATTGCGCGACAGGACACGAA
ATGAATTTGTCGCAGGGACGAGGAGAGAGGGAGTAAGAAATTGCGGAATG
TCACCCGTCTATCCTTAGAGACACGGTAAAACCGTGATTTTTTTCTCTCC
TCATGAGGAAAACGACCCCTCATGCACCAAGCCGACCGAGGGCACTCGGA
ACACGTTAGACCTCCTGGCTCACACATGTTCGTGTTGGACCGCCTTCCTC
CCTTCGAATACAAAAATTAATTTTCCCCCCACCTCCGATCACTACTCTAT
CATTTTTGACCTGCGTCGCTTACCACACATGTCGTCACATGTCCCACACT
CAGCTTCTTCCATTCGATGGCCTGTCCCGAGGCCGGGCCACGGCAACTTG
AAGCTCTCGAGCGATGGCGGCGATACGATAGGCATGATAAGATGACCCCT
TCCTTCGATTCAGGCATTTGTCCCACACATCAAACCCATCCCAGACA back to topprotein sequence of jgi.p|Nanoce1779_2|579337 >mRNA_2172-protein ID=mRNA_2172-protein|Name=jgi.p|Nanoce1779_2|579337|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MAEIFESYEDEFRSLASDCQKNLSDLLTYETNRDKRMALLQLATPQVAQL
EGIIKQMKVEVRSQDPATKAALSIKVQSYEKALAGVKSDLGKAREREEKD
ALFGGGRAGGGAGAMAQRQRLLETNERLANQNRTIENARKVMAETEQVGI
QIGEELDSNREKIQNIRGKVSEVQGLAGQAKKLVKDMGKRWF* back to topmRNA from alignment at scaffold_4:962412..965863- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2172 ID=mRNA_2172|Name=jgi.p|Nanoce1779_2|579337|organism=Nannochloropsis oceanica|type=mRNA|length=3452bp|location=Sequence derived from alignment at scaffold_4:962412..965863- (Nannochloropsis oceanica)
ACAGATAAGTTAAGCTGCTCGCGGTTTTGTTCGGGAGGAAGAGGGCATGG
AGCAAGCGAGAGCGAGAAGTGAGGCGAGGGAGAGAGACGTCATGGCGCCA
CGGGACTTGGCTTTGCGCTGGTCATACGCATTGTTCAAGGGCTCTTGATG
TCATGGAAGATGCAGACATGCGGAAAGCAGGGTGTGCACGCGATTTGGGA
TATGAATGTGTGCAGGGAGAGTGAAAATCACGCGACTGGCAGGCTAGATT
TCTCGACGCACCCCCACCCGCTGTACCACCAGTTTCCAGACTTGCTCATC
TGCCTTCTTCAGGCTATGATGAGGCATCGCTGCATCTTGCGCTATACGTT
TCCACTCCGCTCCCTCAACATCCACGCATGCAACCCAACCATACCACAGA
AGCAAAAGACAAGCCCACCATGCCGGCCGCGACCACCTCTTTGTGAGCGC
GTATGTCGTCGTCGTCGTTTCATCACCAGCAACTGAGGAAGGAAGAGCAA
GAATCCTTGGTAGCTTGACAAGGGGAAGGGAGGGAGGAGAGGGAAGGGAG
AGGGAAATGACGATTAATCTCTGGACCCTCCTTTGGTCCTGCGCCCGTAA
CGAAGAAATGGATTAGTTTTGGAGGAGACGAACATGCGTCGCCCTCTTTG
CCGCTGCGTCTCGTGCCCCTTTTTTTACATGACACAAGGGCATGCAGAGT
GTGAATGACCATGAGGTGGCGAATCAGCGACTCGCTATGCTTGTCATCCA
CTCCCGGATTAGTCAGCGCCTTTCCCTTCATGGCGTATGGACAGACGTGT
CGATGATTGTTACGCGTGGAAGTGAACATGATTTGATGGAGAACAGAGAT
CATCCCAGCCGCCTCATGTCGTCACACGCATGACGTGCATCCTTTCACTC
GTGGTTGAAGGACGCATGCAAAACTGCTTGACCTGTTTCAACTCTTATTA
GAATTGCGTAGAAGATTAGAAGAGCCTTTGCGTTAATGCCACGGTGCATG
ATGGATGACGTGCGAATACTCGTGGCCATCGTCTTGTATGTATGCCTTGG
GCGATCCTTCGATTCCATCGCACTTATAAATCCCTCCCTCGCCTCTCTCC
CTCCCTTCACCCGTTTTTACCCGCCCATAGCTCCTACGCCCGCATCAATC
CCACCCCACGGCCTCCCTTCCTGCCGCCGCCATGGCTGAAATCTTTGAAT
CCTACGAGGACGAGTTCCGCTCCCTCGCCTCAGACTGCCAGAAGAATCTC
TCCGACCTGCTCACTTACGAGACGAACCGCGACAAAAGGATGGCCCTCCT
CCAACTAGCCACCCCTCAAGGTGAGTAGACACAGCAGCAGGCATATGGCG
TACTGGATGGAAGTGGGGCAGTAGAACAGAATTTTTCATGTATGGAGGGG
TGAACATGTGTACCCTTGTACCCTCCCTATCTCCTTCTCTCCCTCCTTTC
TTTCACGTCGTATTGTCGCTGAAAAAAGGATATAAGATTGTGGGCCTTGA
CTTCATCTGCCCTACTGTCTCTTTGATTCCCGTTCCTTCTTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCCAGTCGCCCAACTGGAAGGTATCATCAA
GCAAATGAAGGTGGAGGTGCGTTCGCAAGACCCCGCCACCAAAGCTGCTC
TCAGCATCAAGGTTCAATCCTATGAAAAGGCCTTGGCAGGGGTGAAGAGT
GACTTGGGGAAGGCCCGCGAGAGGGAAGAAAAAGACGCCCTGTTTGGGGG
GGGGCGTGCTGGCGGAGGGGCAGGGGCGATGGCGCAACGCCAGAGGTTGT
TGGAGACAAATGAGCGGCTGGCGAATCAAAATCGAACGATCGAGAATGCA
AGGAAGGTGATGGCAGAAACGGAGCAAGTTGGTAGGTGAGAGAGGGAGGG
AGGGAGAGGGAAAGCGGAAAAGAGGGAAGGACGATAGAAATTTAGATTTC
AATGGCGGTAGCAAGACACGAGCATCATTCAATTATTATCATATCGTTAT
GTTTTTTCCGACCATCCAGGCATTCAGATCGGGGAGGAGCTGGATTCAAA
CAGGGAGAAGATTCAGAACATTCGCGGCAAGGTGAGATGAGAGATACGCG
GAGATGTGTCAGTCAGGGGGGGGGGGCATGGCCCATGTATTTGGTTGGCG
TGCATCCCTTCCCTCTTCCGTCGCGTCTGGAATGCGAGCAGGAATGTATG
ACCTCACTCCACAGCAACACGATTTCCCACCTTTTCTCCTCCTTCCCTCC
CTCCTTTCCTCCTTCCCTCCCTCCCTTCATGTTTTTTTCACAGGTGAGCG
AAGTGCAGGGCCTAGCCGGTCAGGCGAAGAAATTAGTCAAGGACATGGGA
AAGCGATGGTTCTAACCCGCTCACGCACTATACGTATATATATATATATA
TATATATTATTCCTCCTCTGAAGAGCCGTGCTGCTGCTGGCGGATGGATG
GGAAGGGAGGAGGGCAAGGGCGCGACGATGTCATTTTCGCCTCCCCCCTC
TCCTTCATCGTTTCCCAAGCTCACTTATGCGTGTAAAATTTTGTGCATAT
ACTGTGCCTGTGCGTTTTTTGATTGCACAAGCGAATCGTACATGACCATC
TTCAACCCACCGTCCGTCCTTCCTCCTCTTCCTCTCCCTCTCCTTCTACC
TCTTCATCCATCCCTTCTTGAATCCAGGTCTCGGAGGTGGGTGGACTAAC
CAACACAGCCCGGCGACTCATCTCCAATATTAGCCGGCGAGAAACTCAGC
AGAAAATGCTATTATGGGGCGTGGCGGGTTCCTTGTTTATCGCTATTATC
CTGATCATTTATTACTCGTCACGGTAGAGAAGCAGAGGGGAAGGGAAGGA
GGATCGAGAGAGGGTGAGGCCTTACATGATCGTATACCTTAATCTTTTCA
ATAATTCAGGTGTATTCTCGTGACCTGCATGTAATACAAAAGCAACTACA
GGAGGGGTTGTACAAAAGAAAGATAAATTAATGAGATTGCGCGACAGGAC
ACGAAATGAATTTGTCGCAGGGACGAGGAGAGAGGGAGTAAGAAATTGCG
GAATGTCACCCGTCTATCCTTAGAGACACGGTAAAACCGTGATTTTTTTC
TCTCCTCATGAGGAAAACGACCCCTCATGCACCAAGCCGACCGAGGGCAC
TCGGAACACGTTAGACCTCCTGGCTCACACATGTTCGTGTTGGACCGCCT
TCCTCCCTTCGAATACAAAAATTAATTTTCCCCCCACCTCCGATCACTAC
TCTATCATTTTTGACCTGCGTCGCTTACCACACATGTCGTCACATGTCCC
ACACTCAGCTTCTTCCATTCGATGGCCTGTCCCGAGGCCGGGCCACGGCA
ACTTGAAGCTCTCGAGCGATGGCGGCGATACGATAGGCATGATAAGATGA
CCCCTTCCTTCGATTCAGGCATTTGTCCCACACATCAAACCCATCCCAGA
CA back to topCoding sequence (CDS) from alignment at scaffold_4:962412..965863- >mRNA_2172 ID=mRNA_2172|Name=jgi.p|Nanoce1779_2|579337|organism=Nannochloropsis oceanica|type=CDS|length=2316bp|location=Sequence derived from alignment at scaffold_4:962412..965863- (Nannochloropsis oceanica)
GTGAGCGAAGTGCAGGGCCTAGCCGGTCAGGCGAAGAAATTAGTCAAGGA
CATGGGAAAGCGATGGTTCTAAGCATTCAGATCGGGGAGGAGCTGGATTC
AAACAGGGAGAAGATTCAGAACATTCGCGGCAAGTCGCCCAACTGGAAGG
TATCATCAAGCAAATGAAGGTGGAGGTGCGTTCGCAAGACCCCGCCACCA
AAGCTGCTCTCAGCATCAAGGTTCAATCCTATGAAAAGGCCTTGGCAGGG
GTGAAGAGTGACTTGGGGAAGGCCCGCGAGAGGGAAGAAAAAGACGCCCT
GTTTGGGGGGGGGCGTGCTGGCGGAGGGGCAGGGGCGATGGCGCAACGCC
AGAGGTTGTTGGAGACAAATGAGCGGCTGGCGAATCAAAATCGAACGATC
GAGAATGCAAGGAAGGTGATGGCAGAAACGGAGCAAGTTGATGGCTGAAA
TCTTTGAATCCTACGAGGACGAGTTCCGCTCCCTCGCCTCAGACTGCCAG
AAGAATCTCTCCGACCTGCTCACTTACGAGACGAACCGCGACAAAAGGAT
GGCCCTCCTCCAACTAGCCACCCCTCAAGGTGAGCGAAGTGCAGGGCCTA
GCCGGTCAGGCGAAGAAATTAGTCAAGGACATGGGAAAGCGATGGTTCTA
AGCATTCAGATCGGGGAGGAGCTGGATTCAAACAGGGAGAAGATTCAGAA
CATTCGCGGCAAGTCGCCCAACTGGAAGGTATCATCAAGCAAATGAAGGT
GGAGGTGCGTTCGCAAGACCCCGCCACCAAAGCTGCTCTCAGCATCAAGG
TTCAATCCTATGAAAAGGCCTTGGCAGGGGTGAAGAGTGACTTGGGGAAG
GCCCGCGAGAGGGAAGAAAAAGACGCCCTGTTTGGGGGGGGGCGTGCTGG
CGGAGGGGCAGGGGCGATGGCGCAACGCCAGAGGTTGTTGGAGACAAATG
AGCGGCTGGCGAATCAAAATCGAACGATCGAGAATGCAAGGAAGGTGATG
GCAGAAACGGAGCAAGTTGATGGCTGAAATCTTTGAATCCTACGAGGACG
AGTTCCGCTCCCTCGCCTCAGACTGCCAGAAGAATCTCTCCGACCTGCTC
ACTTACGAGACGAACCGCGACAAAAGGATGGCCCTCCTCCAACTAGCCAC
CCCTCAAGGTGAGCGAAGTGCAGGGCCTAGCCGGTCAGGCGAAGAAATTA
GTCAAGGACATGGGAAAGCGATGGTTCTAAGCATTCAGATCGGGGAGGAG
CTGGATTCAAACAGGGAGAAGATTCAGAACATTCGCGGCAAGTCGCCCAA
CTGGAAGGTATCATCAAGCAAATGAAGGTGGAGGTGCGTTCGCAAGACCC
CGCCACCAAAGCTGCTCTCAGCATCAAGGTTCAATCCTATGAAAAGGCCT
TGGCAGGGGTGAAGAGTGACTTGGGGAAGGCCCGCGAGAGGGAAGAAAAA
GACGCCCTGTTTGGGGGGGGGCGTGCTGGCGGAGGGGCAGGGGCGATGGC
GCAACGCCAGAGGTTGTTGGAGACAAATGAGCGGCTGGCGAATCAAAATC
GAACGATCGAGAATGCAAGGAAGGTGATGGCAGAAACGGAGCAAGTTGAT
GGCTGAAATCTTTGAATCCTACGAGGACGAGTTCCGCTCCCTCGCCTCAG
ACTGCCAGAAGAATCTCTCCGACCTGCTCACTTACGAGACGAACCGCGAC
AAAAGGATGGCCCTCCTCCAACTAGCCACCCCTCAAGGTGAGCGAAGTGC
AGGGCCTAGCCGGTCAGGCGAAGAAATTAGTCAAGGACATGGGAAAGCGA
TGGTTCTAAGCATTCAGATCGGGGAGGAGCTGGATTCAAACAGGGAGAAG
ATTCAGAACATTCGCGGCAAGTCGCCCAACTGGAAGGTATCATCAAGCAA
ATGAAGGTGGAGGTGCGTTCGCAAGACCCCGCCACCAAAGCTGCTCTCAG
CATCAAGGTTCAATCCTATGAAAAGGCCTTGGCAGGGGTGAAGAGTGACT
TGGGGAAGGCCCGCGAGAGGGAAGAAAAAGACGCCCTGTTTGGGGGGGGG
CGTGCTGGCGGAGGGGCAGGGGCGATGGCGCAACGCCAGAGGTTGTTGGA
GACAAATGAGCGGCTGGCGAATCAAAATCGAACGATCGAGAATGCAAGGA
AGGTGATGGCAGAAACGGAGCAAGTTGATGGCTGAAATCTTTGAATCCTA
CGAGGACGAGTTCCGCTCCCTCGCCTCAGACTGCCAGAAGAATCTCTCCG
ACCTGCTCACTTACGAGACGAACCGCGACAAAAGGATGGCCCTCCTCCAA
CTAGCCACCCCTCAAG back to top
|