jgi.p|Nanoce1779_2|295639, mRNA_2171 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|295639
Unique NamemRNA_2171
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1499
Alignment locationscaffold_4:961033..962531 -

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Properties
Property NameValue
TranscriptId295725
TrackFilteredModels2
ProteinId295639
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:961033..962531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|295639gene_2171Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|295639mRNA_2171-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2171CDS_2171Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2171 ID=mRNA_2171|Name=jgi.p|Nanoce1779_2|295639|organism=Nannochloropsis oceanica|type=mRNA|length=1499bp
CGAGGCCGGGCCACGGCAACTTGAAGCTCTCGAGCGATGGCGGCGATACG
ATAGGCATGATAAGATGACCCCTTCCTTCGATTCAGGCATTTGTCCCACA
CATCAAACCCATCCCAGACATAGCACAACACAGTCATCATCATCACCACT
ATGGTGAAACATCGTCGCCGCTCCTCCAACTCCTCTTCCTCTTCCTCCTC
CTCCTTCAGACAAAAAAGCTTTCCAATTTTGATGGGTAATCCCAAGATGG
CTTGCACCCTGCTTCGCATGCCCGGGGAAGACATGCCTTTGCCGCCCCAA
GAAGTTCCGAGCTACTTCTACAAAGAAGAAGTGATAATCAAGGACGATGA
GGATGAGCAGAGCGAGAAGGATGAGGGAAAGAAGAGTACCCGCGATGGTA
ACAAACGGCGTTACCGACCTCGGCCCACATACAGGTGGGTTTTGGAAGCG
CTCGAGACGCAACTACATGGAACAAGTAGTGCCATCAAAGCGAAAGATGG
CTCTGCATATTTTATTTTACGTGTAGACGAGCAAACTCGCGACACGTGCC
TGGTGCCCTTGACAGAAGTCATCATGCTCAGGCAGACTGCGCGCGATGGA
GAGGACGAGGAAGAGGGGGAGGAAGGGGGGAAGGGAGAAGAGAGACGCAA
GGCAGCCAAGGAATTCATCGAGCATGGCAATCGATTTGATCAGCGAGCAG
AGGCCTGGGCGAAGAGGTATGGGAGGAGATTGGTGGATGTCTTGAATGTA
GGCGGAGGGGACGATACGGAGGACGAAGACGGGGGCGGGGGAGGTGCGAG
GAAGCGGAGGAGGAAGAGTGGGAGGAAGAGGCCGTGGCAACGCACATATC
GCGTGGATGAGGATGCAGATGCAGGAGAAATGGATCATAATCCCTCGACG
AAGGTGGGAACAAGCTACCAGGACGTGTTTGGGTTGATGGAGGGGGGAGG
GAAGAAGGGAGAGGAGAGGGAGGCGTTAGCGGTTGCATTTGAGACTGTTG
ATACGGGGGGGGATGTCCCTGATGGTGCGGACGAAGGATTTGGGGCGCCT
GAATTTGGAGATGAGTACTGTCAACCCGAGCACAGGGTGGCGGCGAGGGA
GGTGGAGGAGGGTGGGGAATGGAGGGGGGGGGAATGGCCGGGGGAGGAGG
CGTTGTATGAGGAGGAGAGTGGGATTGACGGGTATAGAAGCGAAGAGGAG
GAGGAGGAGCAGGAGGAGGAGAAAGAGGAGAGGGGAAAAGAAATTGATGG
AGGGGGCGCGGAGAGGAAGAGCGGAAAGTTCGCGCAAAAAGGGCCGGCAA
CGTTTGAAGTGCGTTTTGCGGGGTTGATGAAAGGGGAGGAGGAGGAGGAT
CAATATTTTGGGGATGATGATGATAGCGACGATGGAAGCGGGAGTGAAGG
GGGAAAAAGGAGGGAATGTAAGGAGGAGGTTGAGGAAGGGGAGAAGAGGA
AGGAGGGATGAGGAGTGGAGGTCTAAAGGAAGGCCTACTGGATAAGAAT
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protein sequence of jgi.p|Nanoce1779_2|295639

>mRNA_2171-protein ID=mRNA_2171-protein|Name=jgi.p|Nanoce1779_2|295639|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MVKHRRRSSNSSSSSSSSFRQKSFPILMGNPKMACTLLRMPGEDMPLPPQ
EVPSYFYKEEVIIKDDEDEQSEKDEGKKSTRDGNKRRYRPRPTYRWVLEA
LETQLHGTSSAIKAKDGSAYFILRVDEQTRDTCLVPLTEVIMLRQTARDG
EDEEEGEEGGKGEERRKAAKEFIEHGNRFDQRAEAWAKRYGRRLVDVLNV
GGGDDTEDEDGGGGGARKRRRKSGRKRPWQRTYRVDEDADAGEMDHNPST
KVGTSYQDVFGLMEGGGKKGEEREALAVAFETVDTGGDVPDGADEGFGAP
EFGDEYCQPEHRVAAREVEEGGEWRGGEWPGEEALYEEESGIDGYRSEEE
EEEQEEEKEERGKEIDGGGAERKSGKFAQKGPATFEVRFAGLMKGEEEED
QYFGDDDDSDDGSGSEGGKRRECKEEVEEGEKRKEG*
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mRNA from alignment at scaffold_4:961033..962531-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2171 ID=mRNA_2171|Name=jgi.p|Nanoce1779_2|295639|organism=Nannochloropsis oceanica|type=mRNA|length=1499bp|location=Sequence derived from alignment at scaffold_4:961033..962531- (Nannochloropsis oceanica)
CGAGGCCGGGCCACGGCAACTTGAAGCTCTCGAGCGATGGCGGCGATACG
ATAGGCATGATAAGATGACCCCTTCCTTCGATTCAGGCATTTGTCCCACA
CATCAAACCCATCCCAGACATAGCACAACACAGTCATCATCATCACCACT
ATGGTGAAACATCGTCGCCGCTCCTCCAACTCCTCTTCCTCTTCCTCCTC
CTCCTTCAGACAAAAAAGCTTTCCAATTTTGATGGGTAATCCCAAGATGG
CTTGCACCCTGCTTCGCATGCCCGGGGAAGACATGCCTTTGCCGCCCCAA
GAAGTTCCGAGCTACTTCTACAAAGAAGAAGTGATAATCAAGGACGATGA
GGATGAGCAGAGCGAGAAGGATGAGGGAAAGAAGAGTACCCGCGATGGTA
ACAAACGGCGTTACCGACCTCGGCCCACATACAGGTGGGTTTTGGAAGCG
CTCGAGACGCAACTACATGGAACAAGTAGTGCCATCAAAGCGAAAGATGG
CTCTGCATATTTTATTTTACGTGTAGACGAGCAAACTCGCGACACGTGCC
TGGTGCCCTTGACAGAAGTCATCATGCTCAGGCAGACTGCGCGCGATGGA
GAGGACGAGGAAGAGGGGGAGGAAGGGGGGAAGGGAGAAGAGAGACGCAA
GGCAGCCAAGGAATTCATCGAGCATGGCAATCGATTTGATCAGCGAGCAG
AGGCCTGGGCGAAGAGGTATGGGAGGAGATTGGTGGATGTCTTGAATGTA
GGCGGAGGGGACGATACGGAGGACGAAGACGGGGGCGGGGGAGGTGCGAG
GAAGCGGAGGAGGAAGAGTGGGAGGAAGAGGCCGTGGCAACGCACATATC
GCGTGGATGAGGATGCAGATGCAGGAGAAATGGATCATAATCCCTCGACG
AAGGTGGGAACAAGCTACCAGGACGTGTTTGGGTTGATGGAGGGGGGAGG
GAAGAAGGGAGAGGAGAGGGAGGCGTTAGCGGTTGCATTTGAGACTGTTG
ATACGGGGGGGGATGTCCCTGATGGTGCGGACGAAGGATTTGGGGCGCCT
GAATTTGGAGATGAGTACTGTCAACCCGAGCACAGGGTGGCGGCGAGGGA
GGTGGAGGAGGGTGGGGAATGGAGGGGGGGGGAATGGCCGGGGGAGGAGG
CGTTGTATGAGGAGGAGAGTGGGATTGACGGGTATAGAAGCGAAGAGGAG
GAGGAGGAGCAGGAGGAGGAGAAAGAGGAGAGGGGAAAAGAAATTGATGG
AGGGGGCGCGGAGAGGAAGAGCGGAAAGTTCGCGCAAAAAGGGCCGGCAA
CGTTTGAAGTGCGTTTTGCGGGGTTGATGAAAGGGGAGGAGGAGGAGGAT
CAATATTTTGGGGATGATGATGATAGCGACGATGGAAGCGGGAGTGAAGG
GGGAAAAAGGAGGGAATGTAAGGAGGAGGTTGAGGAAGGGGAGAAGAGGA
AGGAGGGATGAGGAGTGGAGGTCTAAAGGAAGGCCTACTGGATAAGAAT
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Coding sequence (CDS) from alignment at scaffold_4:961033..962531-

>mRNA_2171 ID=mRNA_2171|Name=jgi.p|Nanoce1779_2|295639|organism=Nannochloropsis oceanica|type=CDS|length=1311bp|location=Sequence derived from alignment at scaffold_4:961033..962531- (Nannochloropsis oceanica)
ATGGTGAAACATCGTCGCCGCTCCTCCAACTCCTCTTCCTCTTCCTCCTC
CTCCTTCAGACAAAAAAGCTTTCCAATTTTGATGGGTAATCCCAAGATGG
CTTGCACCCTGCTTCGCATGCCCGGGGAAGACATGCCTTTGCCGCCCCAA
GAAGTTCCGAGCTACTTCTACAAAGAAGAAGTGATAATCAAGGACGATGA
GGATGAGCAGAGCGAGAAGGATGAGGGAAAGAAGAGTACCCGCGATGGTA
ACAAACGGCGTTACCGACCTCGGCCCACATACAGGTGGGTTTTGGAAGCG
CTCGAGACGCAACTACATGGAACAAGTAGTGCCATCAAAGCGAAAGATGG
CTCTGCATATTTTATTTTACGTGTAGACGAGCAAACTCGCGACACGTGCC
TGGTGCCCTTGACAGAAGTCATCATGCTCAGGCAGACTGCGCGCGATGGA
GAGGACGAGGAAGAGGGGGAGGAAGGGGGGAAGGGAGAAGAGAGACGCAA
GGCAGCCAAGGAATTCATCGAGCATGGCAATCGATTTGATCAGCGAGCAG
AGGCCTGGGCGAAGAGGTATGGGAGGAGATTGGTGGATGTCTTGAATGTA
GGCGGAGGGGACGATACGGAGGACGAAGACGGGGGCGGGGGAGGTGCGAG
GAAGCGGAGGAGGAAGAGTGGGAGGAAGAGGCCGTGGCAACGCACATATC
GCGTGGATGAGGATGCAGATGCAGGAGAAATGGATCATAATCCCTCGACG
AAGGTGGGAACAAGCTACCAGGACGTGTTTGGGTTGATGGAGGGGGGAGG
GAAGAAGGGAGAGGAGAGGGAGGCGTTAGCGGTTGCATTTGAGACTGTTG
ATACGGGGGGGGATGTCCCTGATGGTGCGGACGAAGGATTTGGGGCGCCT
GAATTTGGAGATGAGTACTGTCAACCCGAGCACAGGGTGGCGGCGAGGGA
GGTGGAGGAGGGTGGGGAATGGAGGGGGGGGGAATGGCCGGGGGAGGAGG
CGTTGTATGAGGAGGAGAGTGGGATTGACGGGTATAGAAGCGAAGAGGAG
GAGGAGGAGCAGGAGGAGGAGAAAGAGGAGAGGGGAAAAGAAATTGATGG
AGGGGGCGCGGAGAGGAAGAGCGGAAAGTTCGCGCAAAAAGGGCCGGCAA
CGTTTGAAGTGCGTTTTGCGGGGTTGATGAAAGGGGAGGAGGAGGAGGAT
CAATATTTTGGGGATGATGATGATAGCGACGATGGAAGCGGGAGTGAAGG
GGGAAAAAGGAGGGAATGTAAGGAGGAGGTTGAGGAAGGGGAGAAGAGGA
AGGAGGGATGA
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Synonyms
Publications