jgi.p|Nanoce1779_2|579324, mRNA_2170 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579324
Unique Name	mRNA_2170
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1780
Alignment location	scaffold_4:958652..960770 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579410
Track	FilteredModels2
ProteinId	579324

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:958652..960770 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579324	gene_2170	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579324	mRNA_2170-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2170	CDS_2170	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:958652..960770+
coding sequence from alignment at scaffold_4:958652..960770+

mRNA sequence

>mRNA_2170 ID=mRNA_2170|Name=jgi.p|Nanoce1779_2|579324|organism=Nannochloropsis oceanica|type=mRNA|length=1780bp
ACAGCTATGTCGTCCAGCACGCCATCGCCACCGTCATCGTCACGCAGCCA
CATCGTGGAGGACCAGCTGGGCAAGCTCCGTGCCATGATCAGCAAGTATG
CAGCCCCCGTGCCGACCGACTATCTCTATGCTCTTCCCTCAAACCTACAG
CAACACGCCGCCTCAGACCGCGCCCCGCCCTACAACCCTATCAACAACAA
TGTCGAAGCCAAACCCATCCTCTCTCTTCTCCAAGTTAGCAGGAGCATGA
CCACCACCCAAGCATTCGGCCGGCCATATGAGGGCTTTTCCGAGGAGCAA
GTCCGGAGAGCTTTCCACCTAGGCGACACGGAAGGTGCTCCCCCTGGTTC
CCCCCCCCGCGCCACCGTCCGAGTTCCTAAGCCCACCTATCGCAAATTCT
TCTCCAGCGAGCTTCTAGATTCTGAGACTGTCGCCGCCGAGGAAGCCAAG
ACCGGCAAGGAAAGAGCAGCTGCTACCAAGAAAAGAGCAGCAGAAGCAGC
AGAGGCAGAAGCAGCAGCAGCAGCAGCGGCAGCAGCACAAGCAGCAACAA
TATCGGCAGCCACCGTCGCAGCGACCCCATTCGCAGCGCCTACCTTGAAA
AAGCTTAAGCTCAAAGCAAGTGTCCTTACTCAGTCCTCTTCTTCGTCCTC
CCTCCCCACTCTTGCTCCACCCATATTGGCGCCCACCCCAGTGCTAGCTC
CTGCTCCTGCCGCTGCTGCCCCTGCGCTTCCTCCTGTGCGAGCACCGTCT
CCATTGGTCTTGCCTCCCGCCCCCGAGGTGGATGTGTCTAAGATAACGGG
TCAGAGGCGAGTCTCCGATTTGACCCAGCCGGAGGTGTTGACGATCGCTG
AAGAGATCACGAAGAAATTGCGGGCCAAACGCGGCAAAGGCACGTGGCGG
AAACAGAACCCACTCGACGTTGACATCACGAGGGAAAACTGCGCGGCCTT
GGGGATCCCCCAGTATTTTGACGTGATCCAGACGCCGATGAATCTGCAGA
TAATCAATCGCAAGATTCGCAACTCCGAGTACAAGACTCTGCGGGAATTT
TCCGATGACGTAGAGCTGATGGTGCACAACGCCAAGACGTTCAATGTTGC
CTCTCATCCGGTCCACATCTTCGCGAACGATACCCACCAGCTCTTTCTCC
GGATGTTGCAGTCGCACAAAAATGAGTACGCGTTGATAGATGATCAGAGC
AAATAGCAGCAGCAGCAGTCACTGCAGCAGCTGTAGCAGTGACAGTATTT
GTAGAAGTGGTAGTAGTAGTAATTGTAGCAGTAGTAGTGTAGTGGTAGTA
GCAGTAATAATAATAGAAATAGGAAAAGTAGTAGTAGTGGTAGTAGTCGT
AGTAGTAGTAGTAGTAGTAGTAATAGTAGTATCAGCAGCCGCCACCGCAG
CAGCTGTAGTAGTAGTAGTGGTAGCGGCGGCAGCAGTAGAGACACCTGTC
ACAACAGTCGGTACCTGTGGCAAAATCTTCAGTAAACAGAAAGATAGAGA
GGAACATCACTGGCCCTCTAACAGGATAAGCGAGAGAGAAACGAGAGAGA
GCGTGTGTGAGAGAGATGAGGAAGGAAAGTGATGGTGTGTGTGTGTGTGC
GAGAGATACATAGTATGACAACTTGGTTTAGCACCAAATAAACAAAACTC
ACCACCGCAATCAAATAATGCCGCCACCACCACCACCACCACCACCACAA
CAAAGACAAAGAAAAGGAGAAAAAGAAGAAGCAGAAGAAGAAGGAGGAGG
AGGAGAAGAAGAAGAAGAGTGAAAGAAAGG

protein sequence of jgi.p|Nanoce1779_2|579324

>mRNA_2170-protein ID=mRNA_2170-protein|Name=jgi.p|Nanoce1779_2|579324|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp
MSSSTPSPPSSSRSHIVEDQLGKLRAMISKYAAPVPTDYLYALPSNLQQH
AASDRAPPYNPINNNVEAKPILSLLQVSRSMTTTQAFGRPYEGFSEEQVR
RAFHLGDTEGAPPGSPPRATVRVPKPTYRKFFSSELLDSETVAAEEAKTG
KERAAATKKRAAEAAEAEAAAAAAAAAQAATISAATVAATPFAAPTLKKL
KLKASVLTQSSSSSSLPTLAPPILAPTPVLAPAPAAAAPALPPVRAPSPL
VLPPAPEVDVSKITGQRRVSDLTQPEVLTIAEEITKKLRAKRGKGTWRKQ
NPLDVDITRENCAALGIPQYFDVIQTPMNLQIINRKIRNSEYKTLREFSD
DVELMVHNAKTFNVASHPVHIFANDTHQLFLRMLQSHKNEYALIDDQSK*

mRNA from alignment at scaffold_4:958652..960770+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2170 ID=mRNA_2170|Name=jgi.p|Nanoce1779_2|579324|organism=Nannochloropsis oceanica|type=mRNA|length=2119bp|location=Sequence derived from alignment at scaffold_4:958652..960770+ (Nannochloropsis oceanica)
ACAGCTATGTCGTCCAGCACGCCATCGCCACCGTCATCGTCACGCAGCCA
CATCGTGGAGGACCAGCTGGGCAAGCTCCGTGCCATGATCAGCAAGTATG
CAGCCCCCGTGCCGACCGACTATCTCTATGCTCTTCCCTCAAACCTACAG
CAACACGCCGCCTCAGACCGCGCCCCGCCCTACAACCCTATCAACAACAA
TGTCGAAGCCAAACCCATCCTCTCTCTTCTCCAAGTTAGCAGGAGCATGA
CCACCACCCAAGCATTCGGCCGGCCATATGAGGGCTTTTCCGAGGAGCAA
GTCCGGAGAGCTTTCCACCTAGGCGACACGGAAGGTGCTCCCCCTGGTTC
CCCCCCCCGCGCCACCGTCCGAGTTCCTAAGCCCACCTATCGCAAATTCT
TCTCCAGCGAGCTTCTAGATTCTGAGACTGTCGCCGCCGAGGAAGCCAAG
ACCGGCAAGGAAAGAGCAGCTGCTACCAAGAAAAGAGCAGCAGAAGCAGC
AGAGGCAGAAGCAGCAGCAGCAGCAGCGGCAGCAGCACAAGCAGCAACAA
TATCGGCAGCCACCGTCGCAGCGACCCCATTCGCAGCGCCTACCTTGAAA
AAGCTTAAGCTCAAAGCAAGTGTCCTTACTCAGTCCTCTTCTTCGTCCTC
CCTCCCCACTCTTGCTCCACCCATATTGGCGCCCACCCCAGTGCTAGCTC
CTGCTCCTGCCGCTGCTGCCCCTGCGCTTCCTCCTGTGCGAGCACCGTCT
CCATTGGTCTTGCCTCCCGCCCCCGAGGTGGATGTGTCTAAGATAACGGG
TCAGAGGCGAGTCTCCGATTTGACCCAGCCGGAGGTGTTGACGGTACGTT
ACCATGGTGGCATGAGTTGAAGTGGGGCTTCGGATTGTATTGGGGGGGTT
ATCCTTACTATGAGAGCGAACCCAACGACAGATTCTAGGACCTGAGTTAT
CTCTCGACCTGAAAGCATCGCCACCCTATACGCGTACTTACCCACTCGTC
AATCACCGCCTGCAGATCGCTGAAGAGATCACGAAGAAATTGCGGGCCAA
ACGCGGCAAAGGCACGTGGCGGAAACAGAACCCACTCGACGTTGACATCA
CGAGGGAAAACTGCGCGGCCTTGGGGATCCCCCAGTATTTTGACGTGATC
CAGACGCCGATGAATCTGCAGATAATCAATGTAGGAATGAATAGAGGGAA
GGAGGGGGAGGGAGGGAGGCAAAGAACGTAGCTTGACAGCGTATGGCGCC
TTGCTCTTACTTCCTCCCCCTTCCCGCGCCTCCTCCCTCCCTCCATACTT
AACAGCGCAAGATTCGCAACTCCGAGTACAAGACTCTGCGGGAATTTTCC
GATGACGTAGAGCTGATGGTGCACAACGCCAAGACGTTCAATGTTGCCTC
TCATCCGGTCCACATCTTCGCGAACGATACCCACCAGCTCTTTCTCCGGA
TGTTGCAGTCGCACAAAAATGAGTACGCGTTGATAGATGATCAGAGCAAA
TAGCAGCAGCAGCAGTCACTGCAGCAGCTGTAGCAGTGACAGTATTTGTA
GAAGTGGTAGTAGTAGTAATTGTAGCAGTAGTAGTGTAGTGGTAGTAGCA
GTAATAATAATAGAAATAGGAAAAGTAGTAGTAGTGGTAGTAGTCGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGGTAGTAGTAGTAG
TAGTAGTAGTAATAGTAGTATCAGCAGCCGCCACCGCAGCAGCTGTAGTA
GTAGTAGTGGTAGCGGCGGCAGCAGTAGAGACACCTGTCACAACAGTCGG
TACCTGTGGCAAAATCTTCAGTAAACAGAAAGATAGAGAGGAACATCACT
GGCCCTCTAACAGGATAAGCGAGAGAGAAACGAGAGAGAGCGTGTGTGAG
AGAGATGAGGAAGGAAAGTGATGGTGTGTGTGTGTGTGCGAGAGATACAT
AGTATGACAACTTGGTTTAGCACCAAATAAACAAAACTCACCACCGCAAT
CAAATAATGCCGCCACCACCACCACCACCACCACCACAACAAAGACAAAG
AAAAGGAGAAAAAGAAGAAGCAGAAGAAGAAGGAGGAGGAGGAGAAGAAG
AAGAAGAGTGAAAGAAAGG

Coding sequence (CDS) from alignment at scaffold_4:958652..960770+

>mRNA_2170 ID=mRNA_2170|Name=jgi.p|Nanoce1779_2|579324|organism=Nannochloropsis oceanica|type=CDS|length=3600bp|location=Sequence derived from alignment at scaffold_4:958652..960770+ (Nannochloropsis oceanica)
ATGTCGTCCAGCACGCCATCGCCACCGTCATCGTCACGCAGCCACATCGT
GGAGGACCAGCTGGGCAAGCTCCGTGCCATGATCAGCAAGTATGCAGCCC
CCGTGCCGACCGACTATCTCTATGCTCTTCCCTCAAACCTACAGCAACAC
GCCGCCTCAGACCGCGCCCCGCCCTACAACCCTATCAACAACAATGTCGA
AGCCAAACCCATCCTCTCTCTTCTCCAAGTTAGCAGGAGCATGACCACCA
CCCAAGCATTCGGCCGGCCATATGAGGGCTTTTCCGAGGAGCAAGTCCGG
AGAGCTTTCCACCTAGGCGACACGGAAGGTGCTCCCCCTGGTTCCCCCCC
CCGCGCCACCGTCCGAGTTCCTAAGCCCACCTATCGCAAATTCTTCTCCA
GCGAGCTTCTAGATTCTGAGACTGTCGCCGCCGAGGAAGCCAAGACCGGC
AAGGAAAGAGCAGCTGCTACCAAGAAAAGAGCAGCAGAAGCAGCAGAGGC
AGAAGCAGCAGCAGCAGCAGCGGCAGCAGCACAAGCAGCAACAATATCGG
CAGCCACCGTCGCAGCGACCCCATTCGCAGCGCCTACCTTGAAAAAGCTT
AAGCTCAAAGCAAGTGTCCTTACTCAGTCCTCTTCTTCGTCCTCCCTCCC
CACTCTTGCTCCACCCATATTGGCGCCCACCCCAGTGCTAGCTCCTGCTC
CTGCCGCTGCTGCCCCTGCGCTTCCTCCTGTGCGAGCACCGTCTCCATTG
GTCTTGCCTCCCGCCCCCGAGGTGGATGTGTCTAAGATAACGGGTCAGAG
GCGAGTCTCCGATTTGACCCAGCCGGAGGTGTTGACGATCGCTGAAGAGA
TCACGAAGAAATTGCGGGCCAAACGCGGCAAAGGCACGTGGCGGAAACAG
AACCCACTCGACGTTGACATCACGAGGGAAAACTGCGCGGCCTTGGGGAT
CCCCCAGTATTTTGACGTGATCCAGACGCCGATGAATCTGCAGATAATCA
ATCGCAAGATTCGCAACTCCGAGTACAAGACTCTGCGGGAATTTTCCGAT
GACGTAGAGCTGATGGTGCACAACGCCAAGACGTTCAATGTTGCCTCTCA
TCCGGTCCACATCTTCGCGAACGATACCCACCAGCTCTTTCTCCGGATGT
TGCAGTCGCACAAAAATGAGTACGCGTTGATAGATGATCAGAGCAAATAG
ATGTCGTCCAGCACGCCATCGCCACCGTCATCGTCACGCAGCCACATCGT
GGAGGACCAGCTGGGCAAGCTCCGTGCCATGATCAGCAAGTATGCAGCCC
CCGTGCCGACCGACTATCTCTATGCTCTTCCCTCAAACCTACAGCAACAC
GCCGCCTCAGACCGCGCCCCGCCCTACAACCCTATCAACAACAATGTCGA
AGCCAAACCCATCCTCTCTCTTCTCCAAGTTAGCAGGAGCATGACCACCA
CCCAAGCATTCGGCCGGCCATATGAGGGCTTTTCCGAGGAGCAAGTCCGG
AGAGCTTTCCACCTAGGCGACACGGAAGGTGCTCCCCCTGGTTCCCCCCC
CCGCGCCACCGTCCGAGTTCCTAAGCCCACCTATCGCAAATTCTTCTCCA
GCGAGCTTCTAGATTCTGAGACTGTCGCCGCCGAGGAAGCCAAGACCGGC
AAGGAAAGAGCAGCTGCTACCAAGAAAAGAGCAGCAGAAGCAGCAGAGGC
AGAAGCAGCAGCAGCAGCAGCGGCAGCAGCACAAGCAGCAACAATATCGG
CAGCCACCGTCGCAGCGACCCCATTCGCAGCGCCTACCTTGAAAAAGCTT
AAGCTCAAAGCAAGTGTCCTTACTCAGTCCTCTTCTTCGTCCTCCCTCCC
CACTCTTGCTCCACCCATATTGGCGCCCACCCCAGTGCTAGCTCCTGCTC
CTGCCGCTGCTGCCCCTGCGCTTCCTCCTGTGCGAGCACCGTCTCCATTG
GTCTTGCCTCCCGCCCCCGAGGTGGATGTGTCTAAGATAACGGGTCAGAG
GCGAGTCTCCGATTTGACCCAGCCGGAGGTGTTGACGATCGCTGAAGAGA
TCACGAAGAAATTGCGGGCCAAACGCGGCAAAGGCACGTGGCGGAAACAG
AACCCACTCGACGTTGACATCACGAGGGAAAACTGCGCGGCCTTGGGGAT
CCCCCAGTATTTTGACGTGATCCAGACGCCGATGAATCTGCAGATAATCA
ATCGCAAGATTCGCAACTCCGAGTACAAGACTCTGCGGGAATTTTCCGAT
GACGTAGAGCTGATGGTGCACAACGCCAAGACGTTCAATGTTGCCTCTCA
TCCGGTCCACATCTTCGCGAACGATACCCACCAGCTCTTTCTCCGGATGT
TGCAGTCGCACAAAAATGAGTACGCGTTGATAGATGATCAGAGCAAATAG
ATGTCGTCCAGCACGCCATCGCCACCGTCATCGTCACGCAGCCACATCGT
GGAGGACCAGCTGGGCAAGCTCCGTGCCATGATCAGCAAGTATGCAGCCC
CCGTGCCGACCGACTATCTCTATGCTCTTCCCTCAAACCTACAGCAACAC
GCCGCCTCAGACCGCGCCCCGCCCTACAACCCTATCAACAACAATGTCGA
AGCCAAACCCATCCTCTCTCTTCTCCAAGTTAGCAGGAGCATGACCACCA
CCCAAGCATTCGGCCGGCCATATGAGGGCTTTTCCGAGGAGCAAGTCCGG
AGAGCTTTCCACCTAGGCGACACGGAAGGTGCTCCCCCTGGTTCCCCCCC
CCGCGCCACCGTCCGAGTTCCTAAGCCCACCTATCGCAAATTCTTCTCCA
GCGAGCTTCTAGATTCTGAGACTGTCGCCGCCGAGGAAGCCAAGACCGGC
AAGGAAAGAGCAGCTGCTACCAAGAAAAGAGCAGCAGAAGCAGCAGAGGC
AGAAGCAGCAGCAGCAGCAGCGGCAGCAGCACAAGCAGCAACAATATCGG
CAGCCACCGTCGCAGCGACCCCATTCGCAGCGCCTACCTTGAAAAAGCTT
AAGCTCAAAGCAAGTGTCCTTACTCAGTCCTCTTCTTCGTCCTCCCTCCC
CACTCTTGCTCCACCCATATTGGCGCCCACCCCAGTGCTAGCTCCTGCTC
CTGCCGCTGCTGCCCCTGCGCTTCCTCCTGTGCGAGCACCGTCTCCATTG
GTCTTGCCTCCCGCCCCCGAGGTGGATGTGTCTAAGATAACGGGTCAGAG
GCGAGTCTCCGATTTGACCCAGCCGGAGGTGTTGACGATCGCTGAAGAGA
TCACGAAGAAATTGCGGGCCAAACGCGGCAAAGGCACGTGGCGGAAACAG
AACCCACTCGACGTTGACATCACGAGGGAAAACTGCGCGGCCTTGGGGAT
CCCCCAGTATTTTGACGTGATCCAGACGCCGATGAATCTGCAGATAATCA
ATCGCAAGATTCGCAACTCCGAGTACAAGACTCTGCGGGAATTTTCCGAT
GACGTAGAGCTGATGGTGCACAACGCCAAGACGTTCAATGTTGCCTCTCA
TCCGGTCCACATCTTCGCGAACGATACCCACCAGCTCTTTCTCCGGATGT
TGCAGTCGCACAAAAATGAGTACGCGTTGATAGATGATCAGAGCAAATAG

Synonyms

Publications