jgi.p|Nanoce1779_2|637175, mRNA_2169 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|637175
Unique Name	mRNA_2169
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2529
Alignment location	scaffold_4:955403..957931 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	637261
Track	FilteredModels2
ProteinId	637175

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:955403..957931 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|637175	gene_2169	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|637175	mRNA_2169-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2169	CDS_2169	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:955403..957931+
coding sequence from alignment at scaffold_4:955403..957931+

mRNA sequence

>mRNA_2169 ID=mRNA_2169|Name=jgi.p|Nanoce1779_2|637175|organism=Nannochloropsis oceanica|type=mRNA|length=2529bp
ATGCCCCGCAGGACACCCCCACCACCTTGGCCTCGCCCCGGCACCACCGC
CCCAGCCCCGCTTTTCACTCCCTCTGAGCTCGCTGACTTGCAAGAGCGGA
TTCAGAGCGGAACGAACCTAGACAAGGCATTTCAAGATTTGAGAAGCTGG
CGGTCGTCCGAGGAAGGAAATAGCCCCGTGCCAGACGCGCTGTATCGCGC
CCTTCTGGGTCACTGCCGACATGCCCGCCCACCACAAGCCTACGCAACTC
GCAATTTGGGTTTGGCTCGAGAAGTGGTGCAATGCTACTTTACGGACGCA
TTGATCTCGTCATCACATTCCTTGCCATTGGCGGAGGTACAAGGGGTTCT
GCAGGCGTCGTCAAGGGCAGGAGATGCAGAGGGGGCATTAGGCTTGCTTC
AGTTTTTAATCGGGCAATCCCAAGAGAGGGGTGGAGGAGCTGGGCCCGCT
CGTATGCTTCTGGACGAATTTCTCTTCTTCTTGGTCGTAAAGGCGTGTTG
CATTGAGGGTGATGGCGGCTTGACAGTCGTCAAAAATACGAGAGCCTTAT
CAGCAGTGGCGCCTTTGCTGGGTGAGATGGAAGGGTTGGGGATTGCCAAG
TCCAGTTTTTTGTACAGTGCCGCGTTGAAGGGATACGGCCGGATGGGGTG
GAAAGACCGAGTAGAGGAAATGGGGGACGAGATGTTGGAGAAGAGGAGTG
AGGTGAAAGTAGACCTGGTGGCGATGAACTCCCTGTTGGATGCTCTGGCA
CGGTGTGGGGCGGTGGACCGGGCCCAAAAAATACTGCTGGAGATGGCACG
TGGACGACGGTCAGCACCAGCTTCTGAAGCAGCGGTAGCTACGAGCCTAA
AAACAAATGTAGGCGAGAAATTGGGTGCGGGACCCTCAGTTGCTTATGCG
GCTGCTGCTGAAGCGGTGCCTGTCCTCCTTCCCGCCCTCCCTCGTCCGGA
CCTGTACAGCTATAACATCGTTTTGCGGGCACTGTGTCCGAATGACCTTG
GAGGTGCCTTAAGCCTTTATAGAGATCTAAAGCAGGAGGGGATTCAGCCG
GACGCGGTGACCATAAATACTCTCGTCGCGGGATGTGTGAAGACAGGAAA
TCTGAAACGAGCCTTGTTGATCTTGGAGAGTAGTTCCGTCCCTGCATCTG
TAGAAGGCTATAGTGCCCTAATCGGGGGATTTGCCGCGAGAGGGAAAATA
AAAGAGGCTCAGGAGGTGTTGGAGAAGATGGTCAACGGAGGATTGAAACC
GAATGTGAGGACTTACACGGCCTTGCTCCAGGGAGCGGCGGCGGTGGGAG
AAATGGGGTTGGTGTTTGAGACGTTCGGGATGATGAAAGAGCAAGGAAGA
AAAGATCCAGGGGTACGACCGACAGTGTGGACTTATAATGCTTTGATGGC
TGCCTTGGCAAAGGCGGGAAAGGTGCAGGCAATGCTGGCCTTGAAAGAAG
AGATGTCGAATCCTTCTTCTCGAGCTGGTGGTGGTGCTGCTGCTGTCGCT
GTAGCACCCGACGTGGTCACATGCAACACTTTATTAGATGCCTTGCTGTT
CAAATGTGACCCCCCTCGGATCCGCCAAGCCGAAATGCTGTTTCTCGAAA
TGTTGGAAGACGGCCCTGTTCCAGACCAATACACCTTCTCCACCCTCCTC
CGTGCCTACATCCCTCCCCTCCCTTCCTCTCGCTCCCTCCCGCCCCCTCG
CTCTCCCGTCGATCTTCTCAGCCGTCTTCCTAGTGTACTTCTCCATCGTG
GGGGAGGGCGAGGAGGGGAAGATGACCCTCCCCTTGAAGTGGCTGCTGCT
GAAGCTGCTGCTTTAGATGCTGCCTACACGAGCGCCGAGCCCTCACCGTC
TGAGATCTTACCGGGACCCGATCGATTGCTGGAGTTAATGAACAAGAAGC
ACGATCTTGGTCTGTTGCTTGATACCACAGCTGTCAACTCTCTCTTGCTC
GCCTTCATTAAATCAGGGGCGATCAAACGGTCCTTGGAGGTGTTCCACGA
CTTCAAGAAGGGGAACTTGACCCATGGCGCACTCGTCTCGTCCTCCCCCT
CTGCCTCCCTACCTTTCTCGTCCTCGATGAGAGAAAGAAGGCGGGGCATC
CCAGATGTTGTGACGTACACCATTTTGGTGAAGGGTGTGGCAGCGTCGGA
TAACATGTATGCGGGCGCAAAAATCATGCAGTTATATCGGGAGATGCGGA
GGGAATTTGGTATTGCTCCTGATTTACAACTGGCATACGCGTTGGTGAAC
TCGTTTGCCTCTGCACGATCGAGGGTGGGTGGGTTGGGGATGGAGGACCT
GGAGGAGGTGTTTAACGACTTAAGGGAGCTTGGATGGAAGAAAGAGACCC
TGGGCAGGCTCGAGAAGCGGGCGTCGAGCTATGAAGGGTTATACTCGGAG
GCATGGAAAGAGGGTCCGGCGAGGAAGGGTGGGAGAGGAGCAGGTAGAAG
AGAGGAGAAGGCGTCGGATCGGTTCTTTGATAAGTACGGGTGGAATAAGT
TTGAGAGTGGGTATAACTTTTTTGCCTAG

protein sequence of jgi.p|Nanoce1779_2|637175

>mRNA_2169-protein ID=mRNA_2169-protein|Name=jgi.p|Nanoce1779_2|637175|organism=Nannochloropsis oceanica|type=polypeptide|length=843bp
MPRRTPPPPWPRPGTTAPAPLFTPSELADLQERIQSGTNLDKAFQDLRSW
RSSEEGNSPVPDALYRALLGHCRHARPPQAYATRNLGLAREVVQCYFTDA
LISSSHSLPLAEVQGVLQASSRAGDAEGALGLLQFLIGQSQERGGGAGPA
RMLLDEFLFFLVVKACCIEGDGGLTVVKNTRALSAVAPLLGEMEGLGIAK
SSFLYSAALKGYGRMGWKDRVEEMGDEMLEKRSEVKVDLVAMNSLLDALA
RCGAVDRAQKILLEMARGRRSAPASEAAVATSLKTNVGEKLGAGPSVAYA
AAAEAVPVLLPALPRPDLYSYNIVLRALCPNDLGGALSLYRDLKQEGIQP
DAVTINTLVAGCVKTGNLKRALLILESSSVPASVEGYSALIGGFAARGKI
KEAQEVLEKMVNGGLKPNVRTYTALLQGAAAVGEMGLVFETFGMMKEQGR
KDPGVRPTVWTYNALMAALAKAGKVQAMLALKEEMSNPSSRAGGGAAAVA
VAPDVVTCNTLLDALLFKCDPPRIRQAEMLFLEMLEDGPVPDQYTFSTLL
RAYIPPLPSSRSLPPPRSPVDLLSRLPSVLLHRGGGRGGEDDPPLEVAAA
EAAALDAAYTSAEPSPSEILPGPDRLLELMNKKHDLGLLLDTTAVNSLLL
AFIKSGAIKRSLEVFHDFKKGNLTHGALVSSSPSASLPFSSSMRERRRGI
PDVVTYTILVKGVAASDNMYAGAKIMQLYREMRREFGIAPDLQLAYALVN
SFASARSRVGGLGMEDLEEVFNDLRELGWKKETLGRLEKRASSYEGLYSE
AWKEGPARKGGRGAGRREEKASDRFFDKYGWNKFESGYNFFA*

mRNA from alignment at scaffold_4:955403..957931+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2169 ID=mRNA_2169|Name=jgi.p|Nanoce1779_2|637175|organism=Nannochloropsis oceanica|type=mRNA|length=2529bp|location=Sequence derived from alignment at scaffold_4:955403..957931+ (Nannochloropsis oceanica)
ATGCCCCGCAGGACACCCCCACCACCTTGGCCTCGCCCCGGCACCACCGC
CCCAGCCCCGCTTTTCACTCCCTCTGAGCTCGCTGACTTGCAAGAGCGGA
TTCAGAGCGGAACGAACCTAGACAAGGCATTTCAAGATTTGAGAAGCTGG
CGGTCGTCCGAGGAAGGAAATAGCCCCGTGCCAGACGCGCTGTATCGCGC
CCTTCTGGGTCACTGCCGACATGCCCGCCCACCACAAGCCTACGCAACTC
GCAATTTGGGTTTGGCTCGAGAAGTGGTGCAATGCTACTTTACGGACGCA
TTGATCTCGTCATCACATTCCTTGCCATTGGCGGAGGTACAAGGGGTTCT
GCAGGCGTCGTCAAGGGCAGGAGATGCAGAGGGGGCATTAGGCTTGCTTC
AGTTTTTAATCGGGCAATCCCAAGAGAGGGGTGGAGGAGCTGGGCCCGCT
CGTATGCTTCTGGACGAATTTCTCTTCTTCTTGGTCGTAAAGGCGTGTTG
CATTGAGGGTGATGGCGGCTTGACAGTCGTCAAAAATACGAGAGCCTTAT
CAGCAGTGGCGCCTTTGCTGGGTGAGATGGAAGGGTTGGGGATTGCCAAG
TCCAGTTTTTTGTACAGTGCCGCGTTGAAGGGATACGGCCGGATGGGGTG
GAAAGACCGAGTAGAGGAAATGGGGGACGAGATGTTGGAGAAGAGGAGTG
AGGTGAAAGTAGACCTGGTGGCGATGAACTCCCTGTTGGATGCTCTGGCA
CGGTGTGGGGCGGTGGACCGGGCCCAAAAAATACTGCTGGAGATGGCACG
TGGACGACGGTCAGCACCAGCTTCTGAAGCAGCGGTAGCTACGAGCCTAA
AAACAAATGTAGGCGAGAAATTGGGTGCGGGACCCTCAGTTGCTTATGCG
GCTGCTGCTGAAGCGGTGCCTGTCCTCCTTCCCGCCCTCCCTCGTCCGGA
CCTGTACAGCTATAACATCGTTTTGCGGGCACTGTGTCCGAATGACCTTG
GAGGTGCCTTAAGCCTTTATAGAGATCTAAAGCAGGAGGGGATTCAGCCG
GACGCGGTGACCATAAATACTCTCGTCGCGGGATGTGTGAAGACAGGAAA
TCTGAAACGAGCCTTGTTGATCTTGGAGAGTAGTTCCGTCCCTGCATCTG
TAGAAGGCTATAGTGCCCTAATCGGGGGATTTGCCGCGAGAGGGAAAATA
AAAGAGGCTCAGGAGGTGTTGGAGAAGATGGTCAACGGAGGATTGAAACC
GAATGTGAGGACTTACACGGCCTTGCTCCAGGGAGCGGCGGCGGTGGGAG
AAATGGGGTTGGTGTTTGAGACGTTCGGGATGATGAAAGAGCAAGGAAGA
AAAGATCCAGGGGTACGACCGACAGTGTGGACTTATAATGCTTTGATGGC
TGCCTTGGCAAAGGCGGGAAAGGTGCAGGCAATGCTGGCCTTGAAAGAAG
AGATGTCGAATCCTTCTTCTCGAGCTGGTGGTGGTGCTGCTGCTGTCGCT
GTAGCACCCGACGTGGTCACATGCAACACTTTATTAGATGCCTTGCTGTT
CAAATGTGACCCCCCTCGGATCCGCCAAGCCGAAATGCTGTTTCTCGAAA
TGTTGGAAGACGGCCCTGTTCCAGACCAATACACCTTCTCCACCCTCCTC
CGTGCCTACATCCCTCCCCTCCCTTCCTCTCGCTCCCTCCCGCCCCCTCG
CTCTCCCGTCGATCTTCTCAGCCGTCTTCCTAGTGTACTTCTCCATCGTG
GGGGAGGGCGAGGAGGGGAAGATGACCCTCCCCTTGAAGTGGCTGCTGCT
GAAGCTGCTGCTTTAGATGCTGCCTACACGAGCGCCGAGCCCTCACCGTC
TGAGATCTTACCGGGACCCGATCGATTGCTGGAGTTAATGAACAAGAAGC
ACGATCTTGGTCTGTTGCTTGATACCACAGCTGTCAACTCTCTCTTGCTC
GCCTTCATTAAATCAGGGGCGATCAAACGGTCCTTGGAGGTGTTCCACGA
CTTCAAGAAGGGGAACTTGACCCATGGCGCACTCGTCTCGTCCTCCCCCT
CTGCCTCCCTACCTTTCTCGTCCTCGATGAGAGAAAGAAGGCGGGGCATC
CCAGATGTTGTGACGTACACCATTTTGGTGAAGGGTGTGGCAGCGTCGGA
TAACATGTATGCGGGCGCAAAAATCATGCAGTTATATCGGGAGATGCGGA
GGGAATTTGGTATTGCTCCTGATTTACAACTGGCATACGCGTTGGTGAAC
TCGTTTGCCTCTGCACGATCGAGGGTGGGTGGGTTGGGGATGGAGGACCT
GGAGGAGGTGTTTAACGACTTAAGGGAGCTTGGATGGAAGAAAGAGACCC
TGGGCAGGCTCGAGAAGCGGGCGTCGAGCTATGAAGGGTTATACTCGGAG
GCATGGAAAGAGGGTCCGGCGAGGAAGGGTGGGAGAGGAGCAGGTAGAAG
AGAGGAGAAGGCGTCGGATCGGTTCTTTGATAAGTACGGGTGGAATAAGT
TTGAGAGTGGGTATAACTTTTTTGCCTAG

Coding sequence (CDS) from alignment at scaffold_4:955403..957931+

>mRNA_2169 ID=mRNA_2169|Name=jgi.p|Nanoce1779_2|637175|organism=Nannochloropsis oceanica|type=CDS|length=2529bp|location=Sequence derived from alignment at scaffold_4:955403..957931+ (Nannochloropsis oceanica)
ATGCCCCGCAGGACACCCCCACCACCTTGGCCTCGCCCCGGCACCACCGC
CCCAGCCCCGCTTTTCACTCCCTCTGAGCTCGCTGACTTGCAAGAGCGGA
TTCAGAGCGGAACGAACCTAGACAAGGCATTTCAAGATTTGAGAAGCTGG
CGGTCGTCCGAGGAAGGAAATAGCCCCGTGCCAGACGCGCTGTATCGCGC
CCTTCTGGGTCACTGCCGACATGCCCGCCCACCACAAGCCTACGCAACTC
GCAATTTGGGTTTGGCTCGAGAAGTGGTGCAATGCTACTTTACGGACGCA
TTGATCTCGTCATCACATTCCTTGCCATTGGCGGAGGTACAAGGGGTTCT
GCAGGCGTCGTCAAGGGCAGGAGATGCAGAGGGGGCATTAGGCTTGCTTC
AGTTTTTAATCGGGCAATCCCAAGAGAGGGGTGGAGGAGCTGGGCCCGCT
CGTATGCTTCTGGACGAATTTCTCTTCTTCTTGGTCGTAAAGGCGTGTTG
CATTGAGGGTGATGGCGGCTTGACAGTCGTCAAAAATACGAGAGCCTTAT
CAGCAGTGGCGCCTTTGCTGGGTGAGATGGAAGGGTTGGGGATTGCCAAG
TCCAGTTTTTTGTACAGTGCCGCGTTGAAGGGATACGGCCGGATGGGGTG
GAAAGACCGAGTAGAGGAAATGGGGGACGAGATGTTGGAGAAGAGGAGTG
AGGTGAAAGTAGACCTGGTGGCGATGAACTCCCTGTTGGATGCTCTGGCA
CGGTGTGGGGCGGTGGACCGGGCCCAAAAAATACTGCTGGAGATGGCACG
TGGACGACGGTCAGCACCAGCTTCTGAAGCAGCGGTAGCTACGAGCCTAA
AAACAAATGTAGGCGAGAAATTGGGTGCGGGACCCTCAGTTGCTTATGCG
GCTGCTGCTGAAGCGGTGCCTGTCCTCCTTCCCGCCCTCCCTCGTCCGGA
CCTGTACAGCTATAACATCGTTTTGCGGGCACTGTGTCCGAATGACCTTG
GAGGTGCCTTAAGCCTTTATAGAGATCTAAAGCAGGAGGGGATTCAGCCG
GACGCGGTGACCATAAATACTCTCGTCGCGGGATGTGTGAAGACAGGAAA
TCTGAAACGAGCCTTGTTGATCTTGGAGAGTAGTTCCGTCCCTGCATCTG
TAGAAGGCTATAGTGCCCTAATCGGGGGATTTGCCGCGAGAGGGAAAATA
AAAGAGGCTCAGGAGGTGTTGGAGAAGATGGTCAACGGAGGATTGAAACC
GAATGTGAGGACTTACACGGCCTTGCTCCAGGGAGCGGCGGCGGTGGGAG
AAATGGGGTTGGTGTTTGAGACGTTCGGGATGATGAAAGAGCAAGGAAGA
AAAGATCCAGGGGTACGACCGACAGTGTGGACTTATAATGCTTTGATGGC
TGCCTTGGCAAAGGCGGGAAAGGTGCAGGCAATGCTGGCCTTGAAAGAAG
AGATGTCGAATCCTTCTTCTCGAGCTGGTGGTGGTGCTGCTGCTGTCGCT
GTAGCACCCGACGTGGTCACATGCAACACTTTATTAGATGCCTTGCTGTT
CAAATGTGACCCCCCTCGGATCCGCCAAGCCGAAATGCTGTTTCTCGAAA
TGTTGGAAGACGGCCCTGTTCCAGACCAATACACCTTCTCCACCCTCCTC
CGTGCCTACATCCCTCCCCTCCCTTCCTCTCGCTCCCTCCCGCCCCCTCG
CTCTCCCGTCGATCTTCTCAGCCGTCTTCCTAGTGTACTTCTCCATCGTG
GGGGAGGGCGAGGAGGGGAAGATGACCCTCCCCTTGAAGTGGCTGCTGCT
GAAGCTGCTGCTTTAGATGCTGCCTACACGAGCGCCGAGCCCTCACCGTC
TGAGATCTTACCGGGACCCGATCGATTGCTGGAGTTAATGAACAAGAAGC
ACGATCTTGGTCTGTTGCTTGATACCACAGCTGTCAACTCTCTCTTGCTC
GCCTTCATTAAATCAGGGGCGATCAAACGGTCCTTGGAGGTGTTCCACGA
CTTCAAGAAGGGGAACTTGACCCATGGCGCACTCGTCTCGTCCTCCCCCT
CTGCCTCCCTACCTTTCTCGTCCTCGATGAGAGAAAGAAGGCGGGGCATC
CCAGATGTTGTGACGTACACCATTTTGGTGAAGGGTGTGGCAGCGTCGGA
TAACATGTATGCGGGCGCAAAAATCATGCAGTTATATCGGGAGATGCGGA
GGGAATTTGGTATTGCTCCTGATTTACAACTGGCATACGCGTTGGTGAAC
TCGTTTGCCTCTGCACGATCGAGGGTGGGTGGGTTGGGGATGGAGGACCT
GGAGGAGGTGTTTAACGACTTAAGGGAGCTTGGATGGAAGAAAGAGACCC
TGGGCAGGCTCGAGAAGCGGGCGTCGAGCTATGAAGGGTTATACTCGGAG
GCATGGAAAGAGGGTCCGGCGAGGAAGGGTGGGAGAGGAGCAGGTAGAAG
AGAGGAGAAGGCGTCGGATCGGTTCTTTGATAAGTACGGGTGGAATAAGT
TTGAGAGTGGGTATAACTTTTTTGCCTAG

Synonyms

Publications