Properties
| Property Name | Value |
|---|
| TranscriptId | 625009 |
| Track | FilteredModels2 |
| ProteinId | 624923 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:939165..941315 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2166 ID=mRNA_2166|Name=jgi.p|Nanoce1779_2|624923|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp
ACAGGTAAGTACACTCCTTCACCCCCCACCACAGGTTGTAAACTCCCGAC
GGCAACATTCCCACCCGATCCGTCATCGATCTCCAGCCGGTCCAAACGCC
CCACCCAACAAGTGATGCCCCACTCAGAGATCTATGGTACCACGCCCACG
CCGCTTCCAGAGGGCTACGTCAGACGGCGACGCCTGAGCAGTACCAGCGG
CCGCCGAGCTATCGTGGTGGTGGATCCCTTGAGCAGCGGTGCCCTTCTGG
CGCAGATGGCCCGCGACCGTGGTTACGCCATCATCCGCGTCCTCTCCACC
ACCTTCTCCGATGAGGTCCTCGCCATGCTCCCTGTCGCCTGCAAAGACCT
ACAATTTGCTGCTTCGATCCAGCATACTGGGGACGTGGACGCAACCGTTG
CCTCCATTCGGGCCTTGGGTGGGGGCCCTCATAATGGTCTTTTTGAAATC
ATTGGCTTGACCTGTGGATGTGAGAGTGGGGTGGAGCTCGCAGATGCCGT
CTCGGCCCGGTATGGGAAACCGTTCAAGACAAATGGGGAAGAGCTGATGC
ATCACCGACGGGACAAGTACTTGATGGGGGAGAAAGTGAGGGAGGCAGGG
CTGAGGGCCGCGAAGCAGGTGGAGACGGATACGTGGGAGGAGCTCAAGGC
GTTCGCGGAGGACATCTTTGGAAAAGAAGAGGACGGCGGAATGGAGAATA
TACAGCTTGTGGTGAAGCCATTGAGATCGGCAGGGACGGAGAATGTTGCT
TTTGTGTCTAGTCTTGAGGAGGCTAAGATAGCGTTTAATGTAATATTGGG
GGATCAGAATTTGTTTGGCGAGACGAATGACAAGGTTTTGGTGCAGGAGT
TTTTGTCTGGAAAAGAGTATGTGGTGGATTGTGTATCAAAAGACGGGATG
CACAAGTGCGTGGCGATTTGGGTGTATGACAAGGCCCCCTGCAATGGGTC
AAAATTCGTCTATTTCGGCGTCAATCTCTTTGAAAGCGAAGACGGCGTGA
TCGAGGAACGCGTGACCGACTACGTTTTTAATGTCCTCGACGCCCTCGAC
ATTAAAGAAGGGCCCTCCCACGCGGAGGTCATGTGGTTGGATTCGGAAGA
CCAACCGTGCCTAGTGGAGGTCGGCGCCAGGCCCCACGGGGGCGAAGGGA
CATTCACCGAGCTATCCACCCCCTGTATTAGCTATAATCAATTATCAGTC
ACCTTAGATGCGCTGGAGAACAATGGTAAGTTCGAATTGCTTCCCACGAG
GCCCAAGAAGCTCAAAGCCCACTCAAGGGAAGTGACGCTGGTCTCGAGGG
AGGAAGGGCTGCTGATTGCCTACCCTATGTTGGAAGAAGTGAGGGCGTTG
CAGAGCTATAAAAGTATGGAGATTAAGGTCCTGCCAGGACAGGACATCTC
CTTGACTGTGGATTTTCTGTCGACCCCGGGGAGTATCATGCTGGTGCATC
CGGATCTAGAGGTGGTGGTGAAGGATTACGATCAAATTCATAGGTGGGAG
GAGGAGGGGCGTTTTTATGAGTTGGCGGAGGAGGAGGAGGAGAAGGAGGG
GGGGGGGATGGAGGGAGAGTGGGCTAAAGAGACGAAGGTCTAA back to topprotein sequence of jgi.p|Nanoce1779_2|624923 >mRNA_2166-protein ID=mRNA_2166-protein|Name=jgi.p|Nanoce1779_2|624923|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp
MPHSEIYGTTPTPLPEGYVRRRRLSSTSGRRAIVVVDPLSSGALLAQMAR
DRGYAIIRVLSTTFSDEVLAMLPVACKDLQFAASIQHTGDVDATVASIRA
LGGGPHNGLFEIIGLTCGCESGVELADAVSARYGKPFKTNGEELMHHRRD
KYLMGEKVREAGLRAAKQVETDTWEELKAFAEDIFGKEEDGGMENIQLVV
KPLRSAGTENVAFVSSLEEAKIAFNVILGDQNLFGETNDKVLVQEFLSGK
EYVVDCVSKDGMHKCVAIWVYDKAPCNGSKFVYFGVNLFESEDGVIEERV
TDYVFNVLDALDIKEGPSHAEVMWLDSEDQPCLVEVGARPHGGEGTFTEL
STPCISYNQLSVTLDALENNGKFELLPTRPKKLKAHSREVTLVSREEGLL
IAYPMLEEVRALQSYKSMEIKVLPGQDISLTVDFLSTPGSIMLVHPDLEV
VVKDYDQIHRWEEEGRFYELAEEEEEKEGGGMEGEWAKETKV* back to topmRNA from alignment at scaffold_4:939165..941315- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2166 ID=mRNA_2166|Name=jgi.p|Nanoce1779_2|624923|organism=Nannochloropsis oceanica|type=mRNA|length=2151bp|location=Sequence derived from alignment at scaffold_4:939165..941315- (Nannochloropsis oceanica)
ACAGGTAAGTACACTCCTTCACCCCCCACCACAGGTTGTAAACTCCCGAC
GGCAACATTCCCACCCGATCCGTCATCGATCTCCAGCCGGTCCAAACGCC
CCACCCAACAAGTGATGCCCCACTCAGAGATCTATGGTACCACGCCCACG
CCGCTTCCAGAGGGCTACGTCAGACGGCGACGCCTGAGCAGTACCAGCGG
CCGCCGAGCTATCGTGGTGGTGGATCCCTTGAGCAGCGGTGCCCTTCTGG
CGCAGGTACGCGCTATATTCTGCTACGCGGGGTTTAACCTTTGTCCCTGT
GTGATGACCAGTTGTGTTGAAGCACCATTGATCTTGCAGGGGGAAATCTG
AGGCAAAAAAAGTCGTGCGCTCTGTGACCTCTCAAATTTTCTCTGCATCA
TCTACTTCCCTCTCCTGCGTCCATCACCTGTACAAGTGTGATTCACATCC
CTCACCATAATGCTGTTGGCATACATGCCCGCACCACTATTTTGAATTGA
CTTCTATATCTTTATGATTTAATATTCCATTTTTTTTTTGCCGCTCTATC
TCGTCATATTTACCCTGTAATCTCCCCCCCTCCAACCCCCTTCAGATGGC
CCGCGACCGTGGTTACGCCATCATCCGCGTCCTCTCCACCACCTTCTCCG
ATGAGGTCCTCGCCATGCTCCCTGTCGCCTGCAAAGACCTACAATTTGCT
GCTTCGATCCAGCATACTGGGGACGTGGACGCAACCGTTGCCTCCATTCG
GGCCTTGGGTGGGGGCCCTCATAATGGTCTTTTTGAAATCATTGGCTTGA
CCTGTGGATGTGAGAGTGGGGTGGAGCTCGCAGATGCCGTCTCGGCCCGG
TATGGGAAACCGTTCAAGACAAATGGGGAAGAGCTGATGCATCACCGACG
GGACAAGTACTTGATGGGGGAGAAAGTGAGGGAGGCAGGGCTGAGGGCCG
CGAAGCAGGTGGAGACGGATACGTGGGAGGAGCTCAAGGCGTTCGCGGAG
GACATCTTTGGAAAAGAAGAGGACGGCGGAATGGAGAATATACAGCTTGT
GGTGAAGCCATTGAGATCGGCAGGGACGGAGAATGTTGCTTTTGTGTCTA
GTCTTGAGGAGGCTAAGATAGCGTTTAATGTAATATTGGGGGATCAGAAT
TTGTTTGGCGAGACGAATGACAAGGTTTTGGTGCAGGAGTTTTTGTCTGG
AAAAGAGTATGTGGTGGATTGTGTATCAAAAGACGGGATGCACAAGTGCG
TGGCGATTTGGGTGTATGACAAGGTAAGATGGAGGAGGGAGGGAGGGAGG
GAGGGGGGAAGGGAGTCGTACGCGTTTGTATTTGTCTTCAACTCCCACTG
GTACCGATTGCGTTTCGTGACCACCCCTACTTTCTTTGCTTCGTCTGTGA
ATGTAGCTACCTAAGTCTTTCTGTTGGCTTTATACACAACTCATCCTCTC
TCCCTCGGTCCCTCCCCTTCTTCCTTCCCTCCCTCCCCTAGGCCCCCTGC
AATGGGTCAAAATTCGTCTATTTCGGCGTCAATCTCTTTGAAAGCGAAGA
CGGCGTGATCGAGGAACGCGTGACCGACTACGTTTTTAATGTCCTCGACG
CCCTCGACATTAAAGAAGGGCCCTCCCACGCGGAGGTCATGTGGTTGGAT
TCGGAAGACCAACCGTGCCTAGTGGAGGTCGGCGCCAGGCCCCACGGGGG
CGAAGGGACATTCACCGAGCTATCCACCCCCTGTATTAGCTATAATCAAT
TATCAGTCACCTTAGATGCGCTGGAGAACAATGGTAAGTTCGAATTGCTT
CCCACGAGGCCCAAGAAGCTCAAAGCCCACTCAAGGGAAGTGACGCTGGT
CTCGAGGGAGGAAGGGCTGCTGATTGCCTACCCTATGTTGGAAGAAGTGA
GGGCGTTGCAGAGCTATAAAAGTATGGAGATTAAGGTCCTGCCAGGACAG
GACATCTCCTTGACTGTGGATTTTCTGTCGACCCCGGGGAGTATCATGCT
GGTGCATCCGGATCTAGAGGTGGTGGTGAAGGATTACGATCAAATTCATA
GGTGGGAGGAGGAGGGGCGTTTTTATGAGTTGGCGGAGGAGGAGGAGGAG
AAGGAGGGGGGGGGGATGGAGGGAGAGTGGGCTAAAGAGACGAAGGTCTA
A back to topCoding sequence (CDS) from alignment at scaffold_4:939165..941315- >mRNA_2166 ID=mRNA_2166|Name=jgi.p|Nanoce1779_2|624923|organism=Nannochloropsis oceanica|type=CDS|length=4437bp|location=Sequence derived from alignment at scaffold_4:939165..941315- (Nannochloropsis oceanica)
GCCCCCTGCAATGGGTCAAAATTCGTCTATTTCGGCGTCAATCTCTTTGA
AAGCGAAGACGGCGTGATCGAGGAACGCGTGACCGACTACGTTTTTAATG
TCCTCGACGCCCTCGACATTAAAGAAGGGCCCTCCCACGCGGAGGTCATG
TGGTTGGATTCGGAAGACCAACCGTGCCTAGTGGAGGTCGGCGCCAGGCC
CCACGGGGGCGAAGGGACATTCACCGAGCTATCCACCCCCTGTATTAGCT
ATAATCAATTATCAGTCACCTTAGATGCGCTGGAGAACAATGGTAAGTTC
GAATTGCTTCCCACGAGGCCCAAGAAGCTCAAAGCCCACTCAAGGGAAGT
GACGCTGGTCTCGAGGGAGGAAGGGCTGCTGATTGCCTACCCTATGTTGG
AAGAAGTGAGGGCGTTGCAGAGCTATAAAAGTATGGAGATTAAGGTCCTG
CCAGGACAGGACATCTCCTTGACTGTGGATTTTCTGTCGACCCCGGGGAG
TATCATGCTGGTGCATCCGGATCTAGAGGTGGTGGTGAAGGATTACGATC
AAATTCATAGGTGGGAGGAGGAGGGGCGTTTTTATGAGTTGGCGGAGGAG
GAGGAGGAGAAGGAGGGGGGGGGGATGGAGGGAGAGTGGGCTAAAGAGAC
GAAGGTCTAAATGGCCCGCGACCGTGGTTACGCCATCATCCGCGTCCTCT
CCACCACCTTCTCCGATGAGGTCCTCGCCATGCTCCCTGTCGCCTGCAAA
GACCTACAATTTGCTGCTTCGATCCAGCATACTGGGGACGTGGACGCAAC
CGTTGCCTCCATTCGGGCCTTGGGTGGGGGCCCTCATAATGGTCTTTTTG
AAATCATTGGCTTGACCTGTGGATGTGAGAGTGGGGTGGAGCTCGCAGAT
GCCGTCTCGGCCCGGTATGGGAAACCGTTCAAGACAAATGGGGAAGAGCT
GATGCATCACCGACGGGACAAGTACTTGATGGGGGAGAAAGTGAGGGAGG
CAGGGCTGAGGGCCGCGAAGCAGGTGGAGACGGATACGTGGGAGGAGCTC
AAGGCGTTCGCGGAGGACATCTTTGGAAAAGAAGAGGACGGCGGAATGGA
GAATATACAGCTTGTGGTGAAGCCATTGAGATCGGCAGGGACGGAGAATG
TTGCTTTTGTGTCTAGTCTTGAGGAGGCTAAGATAGCGTTTAATGTAATA
TTGGGGGATCAGAATTTGTTTGGCGAGACGAATGACAAGGTTTTGGTGCA
GGAGTTTTTGTCTGGAAAAGAGTATGTGGTGGATTGTGTATCAAAAGACG
GGATGCACAAGTGCGTGGCGATTTGGGTGTATGACAAGATGCCCCACTCA
GAGATCTATGGTACCACGCCCACGCCGCTTCCAGAGGGCTACGTCAGACG
GCGACGCCTGAGCAGTACCAGCGGCCGCCGAGCTATCGTGGTGGTGGATC
CCTTGAGCAGCGGTGCCCTTCTGGCGCAGGCCCCCTGCAATGGGTCAAAA
TTCGTCTATTTCGGCGTCAATCTCTTTGAAAGCGAAGACGGCGTGATCGA
GGAACGCGTGACCGACTACGTTTTTAATGTCCTCGACGCCCTCGACATTA
AAGAAGGGCCCTCCCACGCGGAGGTCATGTGGTTGGATTCGGAAGACCAA
CCGTGCCTAGTGGAGGTCGGCGCCAGGCCCCACGGGGGCGAAGGGACATT
CACCGAGCTATCCACCCCCTGTATTAGCTATAATCAATTATCAGTCACCT
TAGATGCGCTGGAGAACAATGGTAAGTTCGAATTGCTTCCCACGAGGCCC
AAGAAGCTCAAAGCCCACTCAAGGGAAGTGACGCTGGTCTCGAGGGAGGA
AGGGCTGCTGATTGCCTACCCTATGTTGGAAGAAGTGAGGGCGTTGCAGA
GCTATAAAAGTATGGAGATTAAGGTCCTGCCAGGACAGGACATCTCCTTG
ACTGTGGATTTTCTGTCGACCCCGGGGAGTATCATGCTGGTGCATCCGGA
TCTAGAGGTGGTGGTGAAGGATTACGATCAAATTCATAGGTGGGAGGAGG
AGGGGCGTTTTTATGAGTTGGCGGAGGAGGAGGAGGAGAAGGAGGGGGGG
GGGATGGAGGGAGAGTGGGCTAAAGAGACGAAGGTCTAAATGGCCCGCGA
CCGTGGTTACGCCATCATCCGCGTCCTCTCCACCACCTTCTCCGATGAGG
TCCTCGCCATGCTCCCTGTCGCCTGCAAAGACCTACAATTTGCTGCTTCG
ATCCAGCATACTGGGGACGTGGACGCAACCGTTGCCTCCATTCGGGCCTT
GGGTGGGGGCCCTCATAATGGTCTTTTTGAAATCATTGGCTTGACCTGTG
GATGTGAGAGTGGGGTGGAGCTCGCAGATGCCGTCTCGGCCCGGTATGGG
AAACCGTTCAAGACAAATGGGGAAGAGCTGATGCATCACCGACGGGACAA
GTACTTGATGGGGGAGAAAGTGAGGGAGGCAGGGCTGAGGGCCGCGAAGC
AGGTGGAGACGGATACGTGGGAGGAGCTCAAGGCGTTCGCGGAGGACATC
TTTGGAAAAGAAGAGGACGGCGGAATGGAGAATATACAGCTTGTGGTGAA
GCCATTGAGATCGGCAGGGACGGAGAATGTTGCTTTTGTGTCTAGTCTTG
AGGAGGCTAAGATAGCGTTTAATGTAATATTGGGGGATCAGAATTTGTTT
GGCGAGACGAATGACAAGGTTTTGGTGCAGGAGTTTTTGTCTGGAAAAGA
GTATGTGGTGGATTGTGTATCAAAAGACGGGATGCACAAGTGCGTGGCGA
TTTGGGTGTATGACAAGATGCCCCACTCAGAGATCTATGGTACCACGCCC
ACGCCGCTTCCAGAGGGCTACGTCAGACGGCGACGCCTGAGCAGTACCAG
CGGCCGCCGAGCTATCGTGGTGGTGGATCCCTTGAGCAGCGGTGCCCTTC
TGGCGCAGGCCCCCTGCAATGGGTCAAAATTCGTCTATTTCGGCGTCAAT
CTCTTTGAAAGCGAAGACGGCGTGATCGAGGAACGCGTGACCGACTACGT
TTTTAATGTCCTCGACGCCCTCGACATTAAAGAAGGGCCCTCCCACGCGG
AGGTCATGTGGTTGGATTCGGAAGACCAACCGTGCCTAGTGGAGGTCGGC
GCCAGGCCCCACGGGGGCGAAGGGACATTCACCGAGCTATCCACCCCCTG
TATTAGCTATAATCAATTATCAGTCACCTTAGATGCGCTGGAGAACAATG
GTAAGTTCGAATTGCTTCCCACGAGGCCCAAGAAGCTCAAAGCCCACTCA
AGGGAAGTGACGCTGGTCTCGAGGGAGGAAGGGCTGCTGATTGCCTACCC
TATGTTGGAAGAAGTGAGGGCGTTGCAGAGCTATAAAAGTATGGAGATTA
AGGTCCTGCCAGGACAGGACATCTCCTTGACTGTGGATTTTCTGTCGACC
CCGGGGAGTATCATGCTGGTGCATCCGGATCTAGAGGTGGTGGTGAAGGA
TTACGATCAAATTCATAGGTGGGAGGAGGAGGGGCGTTTTTATGAGTTGG
CGGAGGAGGAGGAGGAGAAGGAGGGGGGGGGGATGGAGGGAGAGTGGGCT
AAAGAGACGAAGGTCTAAATGGCCCGCGACCGTGGTTACGCCATCATCCG
CGTCCTCTCCACCACCTTCTCCGATGAGGTCCTCGCCATGCTCCCTGTCG
CCTGCAAAGACCTACAATTTGCTGCTTCGATCCAGCATACTGGGGACGTG
GACGCAACCGTTGCCTCCATTCGGGCCTTGGGTGGGGGCCCTCATAATGG
TCTTTTTGAAATCATTGGCTTGACCTGTGGATGTGAGAGTGGGGTGGAGC
TCGCAGATGCCGTCTCGGCCCGGTATGGGAAACCGTTCAAGACAAATGGG
GAAGAGCTGATGCATCACCGACGGGACAAGTACTTGATGGGGGAGAAAGT
GAGGGAGGCAGGGCTGAGGGCCGCGAAGCAGGTGGAGACGGATACGTGGG
AGGAGCTCAAGGCGTTCGCGGAGGACATCTTTGGAAAAGAAGAGGACGGC
GGAATGGAGAATATACAGCTTGTGGTGAAGCCATTGAGATCGGCAGGGAC
GGAGAATGTTGCTTTTGTGTCTAGTCTTGAGGAGGCTAAGATAGCGTTTA
ATGTAATATTGGGGGATCAGAATTTGTTTGGCGAGACGAATGACAAGGTT
TTGGTGCAGGAGTTTTTGTCTGGAAAAGAGTATGTGGTGGATTGTGTATC
AAAAGACGGGATGCACAAGTGCGTGGCGATTTGGGTGTATGACAAGATGC
CCCACTCAGAGATCTATGGTACCACGCCCACGCCGCTTCCAGAGGGCTAC
GTCAGACGGCGACGCCTGAGCAGTACCAGCGGCCGCCGAGCTATCGTGGT
GGTGGATCCCTTGAGCAGCGGTGCCCTTCTGGCGCAG back to top
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