jgi.p|Nanoce1779_2|524341, mRNA_2164 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|524341
Unique NamemRNA_2164
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length774
Alignment locationscaffold_4:937325..938098 +

Link to JBrowse

Properties
Property NameValue
TranscriptId524427
TrackFilteredModels2
ProteinId524341
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:937325..938098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524341gene_2164Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524341mRNA_2164-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2164CDS_2164Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2164 ID=mRNA_2164|Name=jgi.p|Nanoce1779_2|524341|organism=Nannochloropsis oceanica|type=mRNA|length=774bp
ATGCATGCGGGTTCGGGGAGGAGCAGCAGCAGCAGCAGCACGCACGACGG
CAGCAGCAGAAGCAACGGTGGTAGCAGCCCAAGTCCACCGTTGCGGGAGG
CCTTGCTTGCATATCAGCAGCAAGTGCAGCTGTACGAGAAGCTGGCACGT
GTATTGGGAGGGCCTCGCGACGACGCTGAGCTCCGCAGCCAGCTTCTTGC
GCAAGAGTGCGTCGTCAAGGAAGTTGGTGCGAGGGTAGAGCAACAGATCA
GTACCCAGATACGAGCCGTGGAGGGGTTGCCGACCAAGGGGGAGAAGGAT
AGGACGAAGGCGGAGATACAGAAGATGAGTAAGGACGCCCAGAGATTAAA
ATTACGATTTGAGAATTTTGGAAGGGGAACCGCGGCAAGAATACGGGAGT
TGGACTTGGTGGGACGACGGGCGGAGGCATTGTTTGACGGGGGGTCAGAA
AATGGGAGAATAGGAGGAGAGGCGAGAGGCGGAGGGGGTCAGAGGATGCA
GATGCTTCAGCAGCAGCAGCAGCAGCAGATGCTGATGCCAGAGGATCTGG
ACGAGAGATTGTTGCAGGAACGAGAGGCGGAGATTGTGTTGATCAATCAG
TCGGTGGTCAAGGTCAATGAGATCTTTAGGGATTTGGGGCAGCTGGTGTC
GAGGCAGCAGGAGGACATCGACGTGATCGAGCAAAACGTGCAGCACTCTC
ATGCCGCGGCCAAGAGTGGGTTGGAGCAGGTGGAGAAGGCGGCCAAATAT
CAGGCTGGGTGCATTCTGTCTTGA
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protein sequence of jgi.p|Nanoce1779_2|524341

>mRNA_2164-protein ID=mRNA_2164-protein|Name=jgi.p|Nanoce1779_2|524341|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MHAGSGRSSSSSSTHDGSSRSNGGSSPSPPLREALLAYQQQVQLYEKLAR
VLGGPRDDAELRSQLLAQECVVKEVGARVEQQISTQIRAVEGLPTKGEKD
RTKAEIQKMSKDAQRLKLRFENFGRGTAARIRELDLVGRRAEALFDGGSE
NGRIGGEARGGGGQRMQMLQQQQQQQMLMPEDLDERLLQEREAEIVLINQ
SVVKVNEIFRDLGQLVSRQQEDIDVIEQNVQHSHAAAKSGLEQVEKAAKY
QAGCILS*
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mRNA from alignment at scaffold_4:937325..938098+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2164 ID=mRNA_2164|Name=jgi.p|Nanoce1779_2|524341|organism=Nannochloropsis oceanica|type=mRNA|length=774bp|location=Sequence derived from alignment at scaffold_4:937325..938098+ (Nannochloropsis oceanica)
ATGCATGCGGGTTCGGGGAGGAGCAGCAGCAGCAGCAGCACGCACGACGG
CAGCAGCAGAAGCAACGGTGGTAGCAGCCCAAGTCCACCGTTGCGGGAGG
CCTTGCTTGCATATCAGCAGCAAGTGCAGCTGTACGAGAAGCTGGCACGT
GTATTGGGAGGGCCTCGCGACGACGCTGAGCTCCGCAGCCAGCTTCTTGC
GCAAGAGTGCGTCGTCAAGGAAGTTGGTGCGAGGGTAGAGCAACAGATCA
GTACCCAGATACGAGCCGTGGAGGGGTTGCCGACCAAGGGGGAGAAGGAT
AGGACGAAGGCGGAGATACAGAAGATGAGTAAGGACGCCCAGAGATTAAA
ATTACGATTTGAGAATTTTGGAAGGGGAACCGCGGCAAGAATACGGGAGT
TGGACTTGGTGGGACGACGGGCGGAGGCATTGTTTGACGGGGGGTCAGAA
AATGGGAGAATAGGAGGAGAGGCGAGAGGCGGAGGGGGTCAGAGGATGCA
GATGCTTCAGCAGCAGCAGCAGCAGCAGATGCTGATGCCAGAGGATCTGG
ACGAGAGATTGTTGCAGGAACGAGAGGCGGAGATTGTGTTGATCAATCAG
TCGGTGGTCAAGGTCAATGAGATCTTTAGGGATTTGGGGCAGCTGGTGTC
GAGGCAGCAGGAGGACATCGACGTGATCGAGCAAAACGTGCAGCACTCTC
ATGCCGCGGCCAAGAGTGGGTTGGAGCAGGTGGAGAAGGCGGCCAAATAT
CAGGCTGGGTGCATTCTGTCTTGA
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Coding sequence (CDS) from alignment at scaffold_4:937325..938098+

>mRNA_2164 ID=mRNA_2164|Name=jgi.p|Nanoce1779_2|524341|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_4:937325..938098+ (Nannochloropsis oceanica)
ATGCATGCGGGTTCGGGGAGGAGCAGCAGCAGCAGCAGCACGCACGACGG
CAGCAGCAGAAGCAACGGTGGTAGCAGCCCAAGTCCACCGTTGCGGGAGG
CCTTGCTTGCATATCAGCAGCAAGTGCAGCTGTACGAGAAGCTGGCACGT
GTATTGGGAGGGCCTCGCGACGACGCTGAGCTCCGCAGCCAGCTTCTTGC
GCAAGAGTGCGTCGTCAAGGAAGTTGGTGCGAGGGTAGAGCAACAGATCA
GTACCCAGATACGAGCCGTGGAGGGGTTGCCGACCAAGGGGGAGAAGGAT
AGGACGAAGGCGGAGATACAGAAGATGAGTAAGGACGCCCAGAGATTAAA
ATTACGATTTGAGAATTTTGGAAGGGGAACCGCGGCAAGAATACGGGAGT
TGGACTTGGTGGGACGACGGGCGGAGGCATTGTTTGACGGGGGGTCAGAA
AATGGGAGAATAGGAGGAGAGGCGAGAGGCGGAGGGGGTCAGAGGATGCA
GATGCTTCAGCAGCAGCAGCAGCAGCAGATGCTGATGCCAGAGGATCTGG
ACGAGAGATTGTTGCAGGAACGAGAGGCGGAGATTGTGTTGATCAATCAG
TCGGTGGTCAAGGTCAATGAGATCTTTAGGGATTTGGGGCAGCTGGTGTC
GAGGCAGCAGGAGGACATCGACGTGATCGAGCAAAACGTGCAGCACTCTC
ATGCCGCGGCCAAGAGTGGGTTGGAGCAGGTGGAGAAGGCGGCCAAATAT
CAGGCTGGGTGCATTCTGTCTTGA
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Synonyms
Publications