jgi.p|Nanoce1779_2|579295, mRNA_2163 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579295
Unique NamemRNA_2163
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1685
Alignment locationscaffold_4:934727..936411 -

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Properties
Property NameValue
TranscriptId579381
TrackFilteredModels2
ProteinId579295
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:934727..936411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579295gene_2163Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579295mRNA_2163-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2163CDS_2163Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2163 ID=mRNA_2163|Name=jgi.p|Nanoce1779_2|579295|organism=Nannochloropsis oceanica|type=mRNA|length=1685bp
CTTGAGCAGCACTCCCACTGCAGGTAAGTTAGCACGCGTCGAGTCCGATG
GGTTTATCTAGCCACATCCCCGCCTCCGTTTCTTTCGTCTATCTACCCTC
CGACTCCGAGAGTCCGTAAGCGCACATACAGTCTTCTCTGTCAAATCACT
ATGCATTCTCTCTCTTGACTTTGTCTGGCTCGTCATTACAATCACTCCTA
CCCTTTTAATTTTTCACTCTCATCTCGCCCACCACTCAACCCCATACACA
GCCTTTCAGCCCCTCTTAAGATCAAGTAACCCCTCCACCTCCTCCTCCCC
CGTCTCTTCCTCCTGCTGTAGCAGCTCCAGGCATCATCCCCGAGGCTGGC
TCATGGCCGCCGCCGCAACCACTGCCGACGCCCAAAGCACCAGCAGGACT
TCCTCCCCTTCCGCTGCCTCCTCCTCCATCAGCAGTCCACCTACCTTAGA
CCTAAATAAATATTTGACGGAGAAGAAGGGAGCGGTGGAACTTGCGCTTG
ATTTGTCTTTGCAGGCGACTTGTCCTGAAGTAGCCAAGATAACTGAGTCC
ATGCGCTATTCCCTCCTCGCCGGGGGTAAGAGGATACGACCAATCATGTG
CCTTGCTGCCTGCGAAATGGCGGGCGGCACTGCCGAAGACGCCATGGCCG
CAGCGGTGGCATTGGAAATGATCCACACGATGTCATTAATTCATGACGAT
TTGCCGAGCATGGATAATGACTCCCTCCGACGGGGCAAGCCAACAAACCA
TGTTATATACGGAGAGGACGTGGCAATCCTGGCAGGTGACGCCTTGCTGT
CCACGGCGTTTGAGCACGTAGCGAAGCACACCCCTGCACACATCCCGGCC
GAGAGGGTGGTGAGCGTCATTGCGCGTCTGGCAGCCTCGGTGGGTGCCAC
GGGTCTGGCGGGCGGTCAGGTGATGGACCTGGAATGCGAGGGGAAGCAAG
GAGTGGGCCTGCAAGAGCTCACGTGGATTCACACTCACAAAACGGCGGCG
TTGCTTAAAGTGAGCGTGGCAGCAGGAGCGATTTTGGGGGGGGCGTCGCC
TGAGGAGGTGGAGGCATGTGAGACGTATGCGCTCGACATTGGGTTGGCGT
TTCAGGTGGCTGACGACATTTTGGACGTAACAGCCTCAACTGAGGCGTTG
GGGAAAACTGCGGGGAAGGATTTAAATATGGATAAGACGACTTACCCGAA
GTTGTTGGGCTTGGAGGGGAGTAGGGAGGAGGCCCGGCGACTTGTCAAGG
AGGCAAAGGCGGCTTTGGCGCGATTTGGTGGACGGGCGGGACCTTTGCTG
GCCATCGCGGATTACATTGTGGAGAGGGAAAATTAAGGGATAAAGGAACG
AGATGATAAAGGAACGAGAGGGAGGAGTGTTTCTTTGTGGATGGTGCGAT
TCTATCTCCCGTGTTGTTTTGCTTAATGTGGTATGAGAGAAAGAGGGGGA
TTCTCACGGCGAAGTCGTTAGGGAAATTTAAGTGGCTTGCATGAGAGCGA
AAACGAGAGAAAAGGAAGGAGGTGATGGAAAAGAAGTGAAGAAGTGAAGA
AGTTAAGGCGGGGGGGGGCATCACGTGAGAGTCAAGACAGTGAACAATAC
GAAGATGAATTTGAGAGAGAAAAAGAGGAAGAAGCAGATGATAAAAAAGA
AGTAGAAGAAGAACAAGGAGAGAATGAAGATTGAG
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protein sequence of jgi.p|Nanoce1779_2|579295

>mRNA_2163-protein ID=mRNA_2163-protein|Name=jgi.p|Nanoce1779_2|579295|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MAAAATTADAQSTSRTSSPSAASSSISSPPTLDLNKYLTEKKGAVELALD
LSLQATCPEVAKITESMRYSLLAGGKRIRPIMCLAACEMAGGTAEDAMAA
AVALEMIHTMSLIHDDLPSMDNDSLRRGKPTNHVIYGEDVAILAGDALLS
TAFEHVAKHTPAHIPAERVVSVIARLAASVGATGLAGGQVMDLECEGKQG
VGLQELTWIHTHKTAALLKVSVAAGAILGGASPEEVEACETYALDIGLAF
QVADDILDVTASTEALGKTAGKDLNMDKTTYPKLLGLEGSREEARRLVKE
AKAALARFGGRAGPLLAIADYIVEREN*
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mRNA from alignment at scaffold_4:934727..936411-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2163 ID=mRNA_2163|Name=jgi.p|Nanoce1779_2|579295|organism=Nannochloropsis oceanica|type=mRNA|length=1685bp|location=Sequence derived from alignment at scaffold_4:934727..936411- (Nannochloropsis oceanica)
CTTGAGCAGCACTCCCACTGCAGGTAAGTTAGCACGCGTCGAGTCCGATG
GGTTTATCTAGCCACATCCCCGCCTCCGTTTCTTTCGTCTATCTACCCTC
CGACTCCGAGAGTCCGTAAGCGCACATACAGTCTTCTCTGTCAAATCACT
ATGCATTCTCTCTCTTGACTTTGTCTGGCTCGTCATTACAATCACTCCTA
CCCTTTTAATTTTTCACTCTCATCTCGCCCACCACTCAACCCCATACACA
GCCTTTCAGCCCCTCTTAAGATCAAGTAACCCCTCCACCTCCTCCTCCCC
CGTCTCTTCCTCCTGCTGTAGCAGCTCCAGGCATCATCCCCGAGGCTGGC
TCATGGCCGCCGCCGCAACCACTGCCGACGCCCAAAGCACCAGCAGGACT
TCCTCCCCTTCCGCTGCCTCCTCCTCCATCAGCAGTCCACCTACCTTAGA
CCTAAATAAATATTTGACGGAGAAGAAGGGAGCGGTGGAACTTGCGCTTG
ATTTGTCTTTGCAGGCGACTTGTCCTGAAGTAGCCAAGATAACTGAGTCC
ATGCGCTATTCCCTCCTCGCCGGGGGTAAGAGGATACGACCAATCATGTG
CCTTGCTGCCTGCGAAATGGCGGGCGGCACTGCCGAAGACGCCATGGCCG
CAGCGGTGGCATTGGAAATGATCCACACGATGTCATTAATTCATGACGAT
TTGCCGAGCATGGATAATGACTCCCTCCGACGGGGCAAGCCAACAAACCA
TGTTATATACGGAGAGGACGTGGCAATCCTGGCAGGTGACGCCTTGCTGT
CCACGGCGTTTGAGCACGTAGCGAAGCACACCCCTGCACACATCCCGGCC
GAGAGGGTGGTGAGCGTCATTGCGCGTCTGGCAGCCTCGGTGGGTGCCAC
GGGTCTGGCGGGCGGTCAGGTGATGGACCTGGAATGCGAGGGGAAGCAAG
GAGTGGGCCTGCAAGAGCTCACGTGGATTCACACTCACAAAACGGCGGCG
TTGCTTAAAGTGAGCGTGGCAGCAGGAGCGATTTTGGGGGGGGCGTCGCC
TGAGGAGGTGGAGGCATGTGAGACGTATGCGCTCGACATTGGGTTGGCGT
TTCAGGTGGCTGACGACATTTTGGACGTAACAGCCTCAACTGAGGCGTTG
GGGAAAACTGCGGGGAAGGATTTAAATATGGATAAGACGACTTACCCGAA
GTTGTTGGGCTTGGAGGGGAGTAGGGAGGAGGCCCGGCGACTTGTCAAGG
AGGCAAAGGCGGCTTTGGCGCGATTTGGTGGACGGGCGGGACCTTTGCTG
GCCATCGCGGATTACATTGTGGAGAGGGAAAATTAAGGGATAAAGGAACG
AGATGATAAAGGAACGAGAGGGAGGAGTGTTTCTTTGTGGATGGTGCGAT
TCTATCTCCCGTGTTGTTTTGCTTAATGTGGTATGAGAGAAAGAGGGGGA
TTCTCACGGCGAAGTCGTTAGGGAAATTTAAGTGGCTTGCATGAGAGCGA
AAACGAGAGAAAAGGAAGGAGGTGATGGAAAAGAAGTGAAGAAGTGAAGA
AGTTAAGGCGGGGGGGGGCATCACGTGAGAGTCAAGACAGTGAACAATAC
GAAGATGAATTTGAGAGAGAAAAAGAGGAAGAAGCAGATGATAAAAAAGA
AGTAGAAGAAGAACAAGGAGAGAATGAAGATTGAG
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Coding sequence (CDS) from alignment at scaffold_4:934727..936411-

>mRNA_2163 ID=mRNA_2163|Name=jgi.p|Nanoce1779_2|579295|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at scaffold_4:934727..936411- (Nannochloropsis oceanica)
ATGGCCGCCGCCGCAACCACTGCCGACGCCCAAAGCACCAGCAGGACTTC
CTCCCCTTCCGCTGCCTCCTCCTCCATCAGCAGTCCACCTACCTTAGACC
TAAATAAATATTTGACGGAGAAGAAGGGAGCGGTGGAACTTGCGCTTGAT
TTGTCTTTGCAGGCGACTTGTCCTGAAGTAGCCAAGATAACTGAGTCCAT
GCGCTATTCCCTCCTCGCCGGGGGTAAGAGGATACGACCAATCATGTGCC
TTGCTGCCTGCGAAATGGCGGGCGGCACTGCCGAAGACGCCATGGCCGCA
GCGGTGGCATTGGAAATGATCCACACGATGTCATTAATTCATGACGATTT
GCCGAGCATGGATAATGACTCCCTCCGACGGGGCAAGCCAACAAACCATG
TTATATACGGAGAGGACGTGGCAATCCTGGCAGGTGACGCCTTGCTGTCC
ACGGCGTTTGAGCACGTAGCGAAGCACACCCCTGCACACATCCCGGCCGA
GAGGGTGGTGAGCGTCATTGCGCGTCTGGCAGCCTCGGTGGGTGCCACGG
GTCTGGCGGGCGGTCAGGTGATGGACCTGGAATGCGAGGGGAAGCAAGGA
GTGGGCCTGCAAGAGCTCACGTGGATTCACACTCACAAAACGGCGGCGTT
GCTTAAAGTGAGCGTGGCAGCAGGAGCGATTTTGGGGGGGGCGTCGCCTG
AGGAGGTGGAGGCATGTGAGACGTATGCGCTCGACATTGGGTTGGCGTTT
CAGGTGGCTGACGACATTTTGGACGTAACAGCCTCAACTGAGGCGTTGGG
GAAAACTGCGGGGAAGGATTTAAATATGGATAAGACGACTTACCCGAAGT
TGTTGGGCTTGGAGGGGAGTAGGGAGGAGGCCCGGCGACTTGTCAAGGAG
GCAAAGGCGGCTTTGGCGCGATTTGGTGGACGGGCGGGACCTTTGCTGGC
CATCGCGGATTACATTGTGGAGAGGGAAAATTAA
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Synonyms
Publications