Properties
| Property Name | Value |
|---|
| TranscriptId | 579379 |
| Track | FilteredModels2 |
| ProteinId | 579293 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:933697..934702 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2162 ID=mRNA_2162|Name=jgi.p|Nanoce1779_2|579293|organism=Nannochloropsis oceanica|type=mRNA|length=601bp
TACATACGCAGCACTCTACCATGTCCGTCGTGGCCAAGATCTGGGACAGC
CTGCGAACGTCCTACACCAGGATGGTGGTGGGAGAGCTCAACAACTACGG
TACGTGTTACCAAGATCTCTTCATAGAAGATCCCGCGGTGATCAAGGCAG
TCCACCACCTTTCTCCCGAAGAACAAGTCTCCCGTGAACGCCGAATTAAG
CGCGCCATCGAGATTTCCCTTAAAAAGAAGTACTTACCCACGGACCTGCA
AAAGATGCAAACGCCCCTCAAGCCTTACCTCAGCCACGCCCTGGAGGAGG
TAGAGGCGGAGGAGACGGAGCGCAAGTTGCTAAATCCCTAGGCCGCACAA
GCATGGGTAGAAAACAGAGAGGGAAGGGAAGAGAGAAGGAGGAGAGAGTT
TTGATGTGTACGTAGATATATACGGTAGTAGTATTGCCCACGCGCACCTT
CCTGAGCCAGCTTGGCTTCGTCTTCTTCTTTTGTGGGTGTAGACAGAGGG
CGAAAAAGGGGGGGAAAGAAGGACATTCGTTGCCCATTGAGCAATCGGAC
AAAGCGTCAGTACAAGAGAGAATTAAAGAAAGAAATATTGATTGACTAAA
A back to topprotein sequence of jgi.p|Nanoce1779_2|579293 >mRNA_2162-protein ID=mRNA_2162-protein|Name=jgi.p|Nanoce1779_2|579293|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MSVVAKIWDSLRTSYTRMVVGELNNYGTCYQDLFIEDPAVIKAVHHLSPE
EQVSRERRIKRAIEISLKKKYLPTDLQKMQTPLKPYLSHALEEVEAEETE
RKLLNP* back to topmRNA from alignment at scaffold_4:933697..934702+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2162 ID=mRNA_2162|Name=jgi.p|Nanoce1779_2|579293|organism=Nannochloropsis oceanica|type=mRNA|length=1006bp|location=Sequence derived from alignment at scaffold_4:933697..934702+ (Nannochloropsis oceanica)
TACATACGCAGCACTCTACCATGTCCGTCGTGGCCAAGATCTGGGACAGC
CTGCGAACGTCCTACACCAGGATGGTGGTGGGAGAGCTCAACAACTACGG
TACGTCTTGCTTAAGCCTGCTAGACGTGGGCTCCCCCCATTTCTACCGGC
TTGTTGTCGTCAAGTCCTGTTGTTCTCTCTTTCTATCCCTTCTCCTGCTG
CGAGATGTACGTGCACGTGTCAATGGTCTTGTCGTGTCTGCTGAGGGCAG
GCCCTTATTCGAGCTAAACTCTGCCTCCCATCCCATCATCGTGCTTGGAG
GCTGCCAGTATTTGCCATCCTCTACGCCTTGACAATGTGCGCCCTATGCT
TGTGGCCACGTCAAGCTTTTCTTCTCTTGTAGTGCAAGCTTTTTTTATGG
TTATCTGTTTTGATTTTTCCTTCCTCCCTCACATCTTTTCACCGAATTCC
TCTCCGACGAACTCACCCACCTACCTCATATCCCCTCCTTCCCCTTCCCC
TCAGGCCTGCGTTACCAAGATCTCTTCATAGAAGATCCCGCGGTGATCAA
GGCAGTCCACCACCTTTCTCCCGAAGAACAAGTCTCCCGTGAACGCCGAA
TTAAGCGCGCCATCGAGATTTCCCTTAAAAAGAAGTACTTACCCACGGAC
CTGCAAAAGATGCAAACGCCCCTCAAGCCTTACCTCAGCCACGCCCTGGA
GGAGGTAGAGGCGGAGGAGACGGAGCGCAAGTTGCTAAATCCCTAGGCCG
CACAAGCATGGGTAGAAAACAGAGAGGGAAGGGAAGAGAGAAGGAGGAGA
GAGTTTTGATGTGTACGTAGATATATACGGTAGTAGTATTGCCCACGCGC
ACCTTCCTGAGCCAGCTTGGCTTCGTCTTCTTCTTTTGTGGGTGTAGACA
GAGGGCGAAAAAGGGGGGGAAAGAAGGACATTCGTTGCCCATTGAGCAAT
CGGACAAAGCGTCAGTACAAGAGAGAATTAAAGAAAGAAATATTGATTGA
CTAAAA back to topCoding sequence (CDS) from alignment at scaffold_4:933697..934702+ >mRNA_2162 ID=mRNA_2162|Name=jgi.p|Nanoce1779_2|579293|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_4:933697..934702+ (Nannochloropsis oceanica)
ATGTCCGTCGTGGCCAAGATCTGGGACAGCCTGCGAACGTCCTACACCAG
GATGGTGGTGGGAGAGCTCAACAACTACGGTACGTGTTACCAAGATCTCT
TCATAGAAGATCCCGCGGTGATCAAGGCAGTCCACCACCTTTCTCCCGAA
GAACAAGTCTCCCGTGAACGCCGAATTAAGCGCGCCATCGAGATTTCCCT
TAAAAAGAAGTACTTACCCACGGACCTGCAAAAGATGCAAACGCCCCTCA
AGCCTTACCTCAGCCACGCCCTGGAGGAGGTAGAGGCGGAGGAGACGGAG
CGCAAGTTGCTAAATCCCTAGATGTCCGTCGTGGCCAAGATCTGGGACAG
CCTGCGAACGTCCTACACCAGGATGGTGGTGGGAGAGCTCAACAACTACG
GTACGTGTTACCAAGATCTCTTCATAGAAGATCCCGCGGTGATCAAGGCA
GTCCACCACCTTTCTCCCGAAGAACAAGTCTCCCGTGAACGCCGAATTAA
GCGCGCCATCGAGATTTCCCTTAAAAAGAAGTACTTACCCACGGACCTGC
AAAAGATGCAAACGCCCCTCAAGCCTTACCTCAGCCACGCCCTGGAGGAG
GTAGAGGCGGAGGAGACGGAGCGCAAGTTGCTAAATCCCTAG back to top
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