jgi.p|Nanoce1779_2|295463, mRNA_2161 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|295463
Unique Name	mRNA_2161
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2318
Alignment location	scaffold_4:930873..933344 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	295549
Track	FilteredModels2
ProteinId	295463

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:930873..933344 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|295463	gene_2161	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|295463	mRNA_2161-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2161	CDS_2161	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:930873..933344+
coding sequence from alignment at scaffold_4:930873..933344+

mRNA sequence

>mRNA_2161 ID=mRNA_2161|Name=jgi.p|Nanoce1779_2|295463|organism=Nannochloropsis oceanica|type=mRNA|length=2318bp
TGGGCCATTCTCTACCTCCGCCGTTGCCTGTTGCCTTGCAGGCGGAGACT
TGCCGGCGCCTTCCTGTCGAACATATACACGCCCCGGTTTGATTAATAAG
AAGTGTACCTAGTCATCATAGGAAAGCAGATGAGTGCATCACAGTGCTGG
GTGCGTCTCAAAATTAAAAGTTGGGCGCGATACATGACGTCTACAGCCCT
CTCCGTTGTCAACCCGCATTAATCTGTAGCCAACCAACACGCCCACCGCA
AACACAACCACAGGAAAATGGTACCCTCCAGCAAGTCGGCATCTTTTTGG
AGCCATTTATTAGGCCGGGCCTTCCACAAGAAGTGCGACGCTGAAGAGCC
AGGTGACTGTTTGCTTGTTTGTGGTGAAGAGTGGTCTCTTGCCCCACACT
ATTCTCCCCGCGTGTGAAAGCTCTGTATGCGGCACACAAGCCAACCGCCA
CCGAATTGTACTAGCCTACGGCCCCCGTCGCCCACAGAGTCTTTCAAGTC
AAGCAGCGGCAAAGATGGCCACCATGTATTTCACCACCTAAAGCGCCAAC
TCGGTTTCTGGCAGTTGACGATGCTGGGCGTCGGTGGCTCAATTGGCGCT
GGCGTTTTCTCCCTGACCGGGGTCGCTGCCGCAAGCGCGGGCCCGGCAGT
CGTGTTTAGCTTCATCTTCAGCGGTATCATAGCGGCCATCGACGCGTTGT
GCTATTCGGAGATGGCTTCACGGTACCCTCAAGCGGGAACTGTCTTTTTG
TACAATCATATCACGTTTGGAGAGCTCCCTGCCCTGCTTGTGAGTATAAA
TTTGTTGGTGGATTACACTGTGGCTGCTGCTTTGATTGCCCGCTCTTTTG
CCTTGTATCTTGTTGAATTTCTCAAGCATGCTGGCTTAGGGCCCCTTCCT
TCATGGTTGGCTTCTTGGCCACTTACGGATATCATAAGTCTAAGTCTTGT
TGCCCCCCTCCTTCTACTTCTCCTCACTCTCGTCCTGTGTAGGGGCACCG
AGACGGGGGCCGTACTAAATGTGATTTTGACGAGTATCAAGGTCGGTGTC
ATTTTGATTGTGTGCGCTGTAGGGCTCTTCCATGTACACCCGCCCAATTG
GGTGCCTTTCTTCCCGCATGGGATCGAGAGTGTGTTTCGAACCTCTTCCA
CAGTTTTTTTTTCTTATGTAGGCTTCGACACCATAGCTTCTTCCTCTGAA
GAATGCAAGGATCCTTTGCGGGATTTGCCACGTGCAATCCTAGTGAGTCT
GGGCGTGTGCGTGGGTATCTATTGTGTTGTTTGTTTAATTTTGACTGGCA
TGGTGCCTTACGATATGATTGATCTGGCTGCACCGCTTTCGTCGGCTTTT
GCGGGGTTGGGATTAGCGTGGGTTCCGGCTGTGATTAGTCTGGGGGGGGT
TGTTGGGCTTGCGACTACGCTTTTGATTGGTTTGTTTGCACAGGCAAGGA
TCTGGTTGGGGATAGCCCGGGATGGTCTTTTGCCAGGCTTCCTGGCGGAG
ATTCACCCACGATTTAAAACGCCGTTTAGAGCGCAGATGTTGTGTGGTGT
ATTACCTATGTGTTTGTCTGCCTTTTTCAACGTGAAATTACTGGCGGAGT
TGCTGGATGTGGGAGTTATTTTGGCGTATGGCACAGTTTGTGCGGCTGTC
TTAGTGCAGCGGTCGACGACAAGAGTAAATACGACCAGATGGCTTGTGTT
GCTGCTGCCGGCGTGTGCTTTGCCGTTTGCATTGCATAAATACAACGTAC
ACACGGGAATTTGGGCCATGGACACAATCCTTTTATTGCTCCCGATTGCT
GCGTTGGTGCCTTTGGTACGACCGGGAGATTACCCGGCGCCTGCGCATGG
TGTGTGTTTTGCTTGCCCGGCTGTGCCTTATCTACCGCTGGCGGGAGTGG
TTCTCAACGTATATTTAGGGGTAAATTTGAATAGTGCCGCGTGGTTGCGT
TTGGCAGTGCTGTGGGCGGGCTTGTTGGTGCATTATGTTTGGACGGAACA
CCAGTATTTTCATGGAAATGGGGAGAAGCGTGGAAGGCAGTTTGGAGAGA
GAAGTGGCAGCAGACGTTATGAAGGAACAGAGAACGGTGTGGTACCTTAC
CCTCCGTTCGAATCGTTGCGGCGCCGTCGTGGGGTCGGGGGGGGAGGGTC
AGGACAATCTCAGTTTGGTGGTGGAGGGGGGGGGAGGAGGAGGAGGGGGG
GAGAATTCATCTCGGACGCCCTTGTTGGACGGGGACGACGCCGTGTAGAC
TTACGTGTACAGACAAGCACACATAAAATACGATCTGTTCAAAAATAATG
CAAAAGAAATGATCAAAT

protein sequence of jgi.p|Nanoce1779_2|295463

>mRNA_2161-protein ID=mRNA_2161-protein|Name=jgi.p|Nanoce1779_2|295463|organism=Nannochloropsis oceanica|type=polypeptide|length=624bp
MRHTSQPPPNCTSLRPPSPTESFKSSSGKDGHHVFHHLKRQLGFWQLTML
GVGGSIGAGVFSLTGVAAASAGPAVVFSFIFSGIIAAIDALCYSEMASRY
PQAGTVFLYNHITFGELPALLVSINLLVDYTVAAALIARSFALYLVEFLK
HAGLGPLPSWLASWPLTDIISLSLVAPLLLLLLTLVLCRGTETGAVLNVI
LTSIKVGVILIVCAVGLFHVHPPNWVPFFPHGIESVFRTSSTVFFSYVGF
DTIASSSEECKDPLRDLPRAILVSLGVCVGIYCVVCLILTGMVPYDMIDL
AAPLSSAFAGLGLAWVPAVISLGGVVGLATTLLIGLFAQARIWLGIARDG
LLPGFLAEIHPRFKTPFRAQMLCGVLPMCLSAFFNVKLLAELLDVGVILA
YGTVCAAVLVQRSTTRVNTTRWLVLLLPACALPFALHKYNVHTGIWAMDT
ILLLLPIAALVPLVRPGDYPAPAHGVCFACPAVPYLPLAGVVLNVYLGVN
LNSAAWLRLAVLWAGLLVHYVWTEHQYFHGNGEKRGRQFGERSGSRRYEG
TENGVVPYPPFESLRRRRGVGGGGSGQSQFGGGGGGRRRRGGEFISDALV
GRGRRRVDLRVQTSTHKIRSVQK*

mRNA from alignment at scaffold_4:930873..933344+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2161 ID=mRNA_2161|Name=jgi.p|Nanoce1779_2|295463|organism=Nannochloropsis oceanica|type=mRNA|length=2472bp|location=Sequence derived from alignment at scaffold_4:930873..933344+ (Nannochloropsis oceanica)
TGGGCCATTCTCTACCTCCGCCGTTGCCTGTTGCCTTGCAGGCGGAGACT
TGCCGGCGCCTTCCTGTCGAACATATACACGCCCCGGTTTGATTAATAAG
AAGTGTACCTAGTCATCATAGGAAAGCAGATGAGTGCATCACAGTGCTGG
GTGCGTCTCAAAATTAAAAGTTGGGCGCGATACATGACGTCTACAGCCCT
CTCCGTTGTCAACCCGCATTAATCTGTAGCCAACCAACACGCCCACCGCA
AACACAACCACAGGAAAATGGTACCCTCCAGCAAGTCGGCATCTTTTTGG
AGCCATTTATTAGGCCGGGCCTTCCACAAGAAGTGCGACGCTGAAGAGCC
AGGTGACTGTTTGCTTGTTTGTGGTGAAGAGTGGTCTCTTGCCCCACACT
ATTCTCCCCGCGTGTGAAAGCTCTGTATGCGGCACACAAGCCAACCGCCA
CCGAATTGTACTAGTGCGTGTCAAAATAAAAGTCGACTCTCCTTGTCCTT
TCCAGCGCAGTGCCACCTGCTTCTTTGCTCCAGTACAATGATGCCCCCAG
CCCCATCCGAGGCCCCCAGCAATCTCACGCCACCTCTTCCCCCCCTCTAT
TCCCCCCGACAAAACAGGCCTACGGCCCCCGTCGCCCACAGAGTCTTTCA
AGTCAAGCAGCGGCAAAGATGGCCACCATGTATTTCACCACCTAAAGCGC
CAACTCGGTTTCTGGCAGTTGACGATGCTGGGCGTCGGTGGCTCAATTGG
CGCTGGCGTTTTCTCCCTGACCGGGGTCGCTGCCGCAAGCGCGGGCCCGG
CAGTCGTGTTTAGCTTCATCTTCAGCGGTATCATAGCGGCCATCGACGCG
TTGTGCTATTCGGAGATGGCTTCACGGTACCCTCAAGCGGGAACTGTCTT
TTTGTACAATCATATCACGTTTGGAGAGCTCCCTGCCCTGCTTGTGAGTA
TAAATTTGTTGGTGGATTACACTGTGGCTGCTGCTTTGATTGCCCGCTCT
TTTGCCTTGTATCTTGTTGAATTTCTCAAGCATGCTGGCTTAGGGCCCCT
TCCTTCATGGTTGGCTTCTTGGCCACTTACGGATATCATAAGTCTAAGTC
TTGTTGCCCCCCTCCTTCTACTTCTCCTCACTCTCGTCCTGTGTAGGGGC
ACCGAGACGGGGGCCGTACTAAATGTGATTTTGACGAGTATCAAGGTCGG
TGTCATTTTGATTGTGTGCGCTGTAGGGCTCTTCCATGTACACCCGCCCA
ATTGGGTGCCTTTCTTCCCGCATGGGATCGAGAGTGTGTTTCGAACCTCT
TCCACAGTTTTTTTTTCTTATGTAGGCTTCGACACCATAGCTTCTTCCTC
TGAAGAATGCAAGGATCCTTTGCGGGATTTGCCACGTGCAATCCTAGTGA
GTCTGGGCGTGTGCGTGGGTATCTATTGTGTTGTTTGTTTAATTTTGACT
GGCATGGTGCCTTACGATATGATTGATCTGGCTGCACCGCTTTCGTCGGC
TTTTGCGGGGTTGGGATTAGCGTGGGTTCCGGCTGTGATTAGTCTGGGGG
GGGTTGTTGGGCTTGCGACTACGCTTTTGATTGGTTTGTTTGCACAGGCA
AGGATCTGGTTGGGGATAGCCCGGGATGGTCTTTTGCCAGGCTTCCTGGC
GGAGATTCACCCACGATTTAAAACGCCGTTTAGAGCGCAGATGTTGTGTG
GTGTATTACCTATGTGTTTGTCTGCCTTTTTCAACGTGAAATTACTGGCG
GAGTTGCTGGATGTGGGAGTTATTTTGGCGTATGGCACAGTTTGTGCGGC
TGTCTTAGTGCAGCGGTCGACGACAAGAGTAAATACGACCAGATGGCTTG
TGTTGCTGCTGCCGGCGTGTGCTTTGCCGTTTGCATTGCATAAATACAAC
GTACACACGGGAATTTGGGCCATGGACACAATCCTTTTATTGCTCCCGAT
TGCTGCGTTGGTGCCTTTGGTACGACCGGGAGATTACCCGGCGCCTGCGC
ATGGTGTGTGTTTTGCTTGCCCGGCTGTGCCTTATCTACCGCTGGCGGGA
GTGGTTCTCAACGTATATTTAGGGGTAAATTTGAATAGTGCCGCGTGGTT
GCGTTTGGCAGTGCTGTGGGCGGGCTTGTTGGTGCATTATGTTTGGACGG
AACACCAGTATTTTCATGGAAATGGGGAGAAGCGTGGAAGGCAGTTTGGA
GAGAGAAGTGGCAGCAGACGTTATGAAGGAACAGAGAACGGTGTGGTACC
TTACCCTCCGTTCGAATCGTTGCGGCGCCGTCGTGGGGTCGGGGGGGGAG
GGTCAGGACAATCTCAGTTTGGTGGTGGAGGGGGGGGGAGGAGGAGGAGG
GGGGGAGAATTCATCTCGGACGCCCTTGTTGGACGGGGACGACGCCGTGT
AGACTTACGTGTACAGACAAGCACACATAAAATACGATCTGTTCAAAAAT
AATGCAAAAGAAATGATCAAAT

Coding sequence (CDS) from alignment at scaffold_4:930873..933344+

>mRNA_2161 ID=mRNA_2161|Name=jgi.p|Nanoce1779_2|295463|organism=Nannochloropsis oceanica|type=CDS|length=3744bp|location=Sequence derived from alignment at scaffold_4:930873..933344+ (Nannochloropsis oceanica)
ATGCGGCACACAAGCCAACCGCCACCGAATTGTACTAGCCTACGGCCCCC
GTCGCCCACAGAGTCTTTCAAGTCAAGCAGCGGCAAAGATGGCCACCATG
TATTTCACCACCTAAAGCGCCAACTCGGTTTCTGGCAGTTGACGATGCTG
GGCGTCGGTGGCTCAATTGGCGCTGGCGTTTTCTCCCTGACCGGGGTCGC
TGCCGCAAGCGCGGGCCCGGCAGTCGTGTTTAGCTTCATCTTCAGCGGTA
TCATAGCGGCCATCGACGCGTTGTGCTATTCGGAGATGGCTTCACGGTAC
CCTCAAGCGGGAACTGTCTTTTTGTACAATCATATCACGTTTGGAGAGCT
CCCTGCCCTGCTTGTGAGTATAAATTTGTTGGTGGATTACACTGTGGCTG
CTGCTTTGATTGCCCGCTCTTTTGCCTTGTATCTTGTTGAATTTCTCAAG
CATGCTGGCTTAGGGCCCCTTCCTTCATGGTTGGCTTCTTGGCCACTTAC
GGATATCATAAGTCTAAGTCTTGTTGCCCCCCTCCTTCTACTTCTCCTCA
CTCTCGTCCTGTGTAGGGGCACCGAGACGGGGGCCGTACTAAATGTGATT
TTGACGAGTATCAAGGTCGGTGTCATTTTGATTGTGTGCGCTGTAGGGCT
CTTCCATGTACACCCGCCCAATTGGGTGCCTTTCTTCCCGCATGGGATCG
AGAGTGTGTTTCGAACCTCTTCCACAGTTTTTTTTTCTTATGTAGGCTTC
GACACCATAGCTTCTTCCTCTGAAGAATGCAAGGATCCTTTGCGGGATTT
GCCACGTGCAATCCTAGTGAGTCTGGGCGTGTGCGTGGGTATCTATTGTG
TTGTTTGTTTAATTTTGACTGGCATGGTGCCTTACGATATGATTGATCTG
GCTGCACCGCTTTCGTCGGCTTTTGCGGGGTTGGGATTAGCGTGGGTTCC
GGCTGTGATTAGTCTGGGGGGGGTTGTTGGGCTTGCGACTACGCTTTTGA
TTGGTTTGTTTGCACAGGCAAGGATCTGGTTGGGGATAGCCCGGGATGGT
CTTTTGCCAGGCTTCCTGGCGGAGATTCACCCACGATTTAAAACGCCGTT
TAGAGCGCAGATGTTGTGTGGTGTATTACCTATGTGTTTGTCTGCCTTTT
TCAACGTGAAATTACTGGCGGAGTTGCTGGATGTGGGAGTTATTTTGGCG
TATGGCACAGTTTGTGCGGCTGTCTTAGTGCAGCGGTCGACGACAAGAGT
AAATACGACCAGATGGCTTGTGTTGCTGCTGCCGGCGTGTGCTTTGCCGT
TTGCATTGCATAAATACAACGTACACACGGGAATTTGGGCCATGGACACA
ATCCTTTTATTGCTCCCGATTGCTGCGTTGGTGCCTTTGGTACGACCGGG
AGATTACCCGGCGCCTGCGCATGGTGTGTGTTTTGCTTGCCCGGCTGTGC
CTTATCTACCGCTGGCGGGAGTGGTTCTCAACGTATATTTAGGGGTAAAT
TTGAATAGTGCCGCGTGGTTGCGTTTGGCAGTGCTGTGGGCGGGCTTGTT
GGTGCATTATGTTTGGACGGAACACCAGTATTTTCATGGAAATGGGGAGA
AGCGTGGAAGGCAGTTTGGAGAGAGAAGTGGCAGCAGACGTTATGAAGGA
ACAGAGAACGGTGTGGTACCTTACCCTCCGTTCGAATCGTTGCGGCGCCG
TCGTGGGGTCGGGGGGGGAGGGTCAGGACAATCTCAGTTTGGTGGTGGAG
GGGGGGGGAGGAGGAGGAGGGGGGGAGAATTCATCTCGGACGCCCTTGTT
GGACGGGGACGACGCCGTGTAGACTTACGTGTACAGACAAGCACACATAA
AATACGATCTGTTCAAAAATAAATGCGGCACACAAGCCAACCGCCACCGA
ATTGTACTAGCCTACGGCCCCCGTCGCCCACAGAGTCTTTCAAGTCAAGC
AGCGGCAAAGATGGCCACCATGTATTTCACCACCTAAAGCGCCAACTCGG
TTTCTGGCAGTTGACGATGCTGGGCGTCGGTGGCTCAATTGGCGCTGGCG
TTTTCTCCCTGACCGGGGTCGCTGCCGCAAGCGCGGGCCCGGCAGTCGTG
TTTAGCTTCATCTTCAGCGGTATCATAGCGGCCATCGACGCGTTGTGCTA
TTCGGAGATGGCTTCACGGTACCCTCAAGCGGGAACTGTCTTTTTGTACA
ATCATATCACGTTTGGAGAGCTCCCTGCCCTGCTTGTGAGTATAAATTTG
TTGGTGGATTACACTGTGGCTGCTGCTTTGATTGCCCGCTCTTTTGCCTT
GTATCTTGTTGAATTTCTCAAGCATGCTGGCTTAGGGCCCCTTCCTTCAT
GGTTGGCTTCTTGGCCACTTACGGATATCATAAGTCTAAGTCTTGTTGCC
CCCCTCCTTCTACTTCTCCTCACTCTCGTCCTGTGTAGGGGCACCGAGAC
GGGGGCCGTACTAAATGTGATTTTGACGAGTATCAAGGTCGGTGTCATTT
TGATTGTGTGCGCTGTAGGGCTCTTCCATGTACACCCGCCCAATTGGGTG
CCTTTCTTCCCGCATGGGATCGAGAGTGTGTTTCGAACCTCTTCCACAGT
TTTTTTTTCTTATGTAGGCTTCGACACCATAGCTTCTTCCTCTGAAGAAT
GCAAGGATCCTTTGCGGGATTTGCCACGTGCAATCCTAGTGAGTCTGGGC
GTGTGCGTGGGTATCTATTGTGTTGTTTGTTTAATTTTGACTGGCATGGT
GCCTTACGATATGATTGATCTGGCTGCACCGCTTTCGTCGGCTTTTGCGG
GGTTGGGATTAGCGTGGGTTCCGGCTGTGATTAGTCTGGGGGGGGTTGTT
GGGCTTGCGACTACGCTTTTGATTGGTTTGTTTGCACAGGCAAGGATCTG
GTTGGGGATAGCCCGGGATGGTCTTTTGCCAGGCTTCCTGGCGGAGATTC
ACCCACGATTTAAAACGCCGTTTAGAGCGCAGATGTTGTGTGGTGTATTA
CCTATGTGTTTGTCTGCCTTTTTCAACGTGAAATTACTGGCGGAGTTGCT
GGATGTGGGAGTTATTTTGGCGTATGGCACAGTTTGTGCGGCTGTCTTAG
TGCAGCGGTCGACGACAAGAGTAAATACGACCAGATGGCTTGTGTTGCTG
CTGCCGGCGTGTGCTTTGCCGTTTGCATTGCATAAATACAACGTACACAC
GGGAATTTGGGCCATGGACACAATCCTTTTATTGCTCCCGATTGCTGCGT
TGGTGCCTTTGGTACGACCGGGAGATTACCCGGCGCCTGCGCATGGTGTG
TGTTTTGCTTGCCCGGCTGTGCCTTATCTACCGCTGGCGGGAGTGGTTCT
CAACGTATATTTAGGGGTAAATTTGAATAGTGCCGCGTGGTTGCGTTTGG
CAGTGCTGTGGGCGGGCTTGTTGGTGCATTATGTTTGGACGGAACACCAG
TATTTTCATGGAAATGGGGAGAAGCGTGGAAGGCAGTTTGGAGAGAGAAG
TGGCAGCAGACGTTATGAAGGAACAGAGAACGGTGTGGTACCTTACCCTC
CGTTCGAATCGTTGCGGCGCCGTCGTGGGGTCGGGGGGGGAGGGTCAGGA
CAATCTCAGTTTGGTGGTGGAGGGGGGGGGAGGAGGAGGAGGGGGGGAGA
ATTCATCTCGGACGCCCTTGTTGGACGGGGACGACGCCGTGTAGACTTAC
GTGTACAGACAAGCACACATAAAATACGATCTGTTCAAAAATAA

Synonyms

Publications