jgi.p|Nanoce1779_2|295456, mRNA_2160 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|295456
Unique Name	mRNA_2160
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1512
Alignment location	scaffold_4:929367..930878 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	295542
Track	FilteredModels2
ProteinId	295456

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:929367..930878 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|295456	gene_2160	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|295456	mRNA_2160-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2160	CDS_2160	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:929367..930878+
coding sequence from alignment at scaffold_4:929367..930878+

mRNA sequence

>mRNA_2160 ID=mRNA_2160|Name=jgi.p|Nanoce1779_2|295456|organism=Nannochloropsis oceanica|type=mRNA|length=1512bp
CTATGTAGTACGGCGAGGAAAACATGATTGTGACTGCATGGCGGGGTAGT
CTTTTCTTTTTACCTTTTTCTTGTTTTTGTTGTTCAGTCTTGTAGAAATG
CTTTCTCAAAGTCTGAGGGAAAACCTTAAAGCCAGGGAATATTAAGTCAC
ATTGTCCACTATCACATCCATCCAGCTCCGCAGCTTTAATTTTACCGCAA
GTCCTCATCCTGCTCGTTCATGCTCTCGCTACGCATTACTTGAGTGGGCC
ACGAATCCAAGTCAAGAGTGGGCCACGAATCCAAGTCAAGAGTGGGCCAC
GAAGCCGTTTGATATCGACTCGCTAGCAACTCTCACGCCACATTCCTCAC
CACCATCATAGACCACCCCACATCACCATGTGGAAGCCAGGCGGTCGGAA
ACCCGGCGGAGGGAAAGTAAGTAGCAAAAACAAAAGCTTCAGCAGCAGCA
AGTCCCCTACTGCAGGATCCGCTGCAGCCACAGCGCCACTCGTCTCGCCA
CCAGGGAGCAAAAATCTAAGCAAGTCGACTATGGGCATGAGATTCATGCA
AAAACGGATGCAACGGGACGCAGAGGCCAAGGAGCAGGCGGAGCACGCGA
AAGCGGCGCGAGCTGCCAAATGGAAGGTGGAACAGGAGGGACAGCAGCAG
CAGCAAGGCAAGGAGAGTGGTGGTGGAAGTGACAAATGTTCACCACAGTC
AATATCACATCATCAACAAGAGCAGCGACGGGTTGTGGTTTTCGAGGCGG
AGGAGACAGACCCGAAGATGCAAGTGCTAGGACGACGTGCATTCGGAGGG
TTTAACGACATGGTGGCGAGGATGTGGGAGCAAAATGCACAGCTGCTAGG
TTTGGGCAAAAAGAAGCGAAAGCGGGAAGGCGACGTGGATGAGTGGGAAG
TCGATGAGCGGGAGATGGTATCTCGGTACCAGAAACATGGACAGTTGCCG
ATTAGAACTGGTGACCGTGTGGGTGGAGGAGGTGGTGGAGGAGGAGGAGG
GGGGGGGAAGAGGGGAAGGTACCAGCAACCAGAAAAGAATGGGCGGCGAG
GAGGAGGGGGAAATGGTGATCACAAATAGCGAAATTATAGCAATCGGCAT
AGTGGGGATTCGGATAAAAAGCAGCGAAGTCATGGTTCGCATGTGCATGT
ATAATTTGACGAAAAGCAAAAAGCAAGGAAGCGCTTAGTTCGTACACACG
CACATCATATTCATGTTCCATCGCTCTTGGACCCCCCATCATCCCCCTAA
CCCCCTACGCTATAGTTTGTTTCCTTCTCGGTTTAGGCTATTCGTACGTG
CTCCAACCTTCTGACAGACCGGAGCTGGGCAAGCCGTCGATCTATGACTC
ACGCAGACCGTTGATACGCTTTTACCACGGTACAACACGGCATCTGTCCT
TGCGAGCATATGCGTTTATCTCCTTCTGTTAAGAGATATCATCATCTGCC
CACTGCCGTAAAAGAGATGGTGCTATAGTCCATTATTTATTCATGCTGTT
GACTAATGGGCC

protein sequence of jgi.p|Nanoce1779_2|295456

>mRNA_2160-protein ID=mRNA_2160-protein|Name=jgi.p|Nanoce1779_2|295456|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MWKPGGRKPGGGKVSSKNKSFSSSKSPTAGSAAATAPLVSPPGSKNLSKS
TMGMRFMQKRMQRDAEAKEQAEHAKAARAAKWKVEQEGQQQQQGKESGGG
SDKCSPQSISHHQQEQRRVVVFEAEETDPKMQVLGRRAFGGFNDMVARMW
EQNAQLLGLGKKKRKREGDVDEWEVDEREMVSRYQKHGQLPIRTGDRVGG
GGGGGGGGGGKRGRYQQPEKNGRRGGGGNGDHK*

mRNA from alignment at scaffold_4:929367..930878+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2160 ID=mRNA_2160|Name=jgi.p|Nanoce1779_2|295456|organism=Nannochloropsis oceanica|type=mRNA|length=1512bp|location=Sequence derived from alignment at scaffold_4:929367..930878+ (Nannochloropsis oceanica)
CTATGTAGTACGGCGAGGAAAACATGATTGTGACTGCATGGCGGGGTAGT
CTTTTCTTTTTACCTTTTTCTTGTTTTTGTTGTTCAGTCTTGTAGAAATG
CTTTCTCAAAGTCTGAGGGAAAACCTTAAAGCCAGGGAATATTAAGTCAC
ATTGTCCACTATCACATCCATCCAGCTCCGCAGCTTTAATTTTACCGCAA
GTCCTCATCCTGCTCGTTCATGCTCTCGCTACGCATTACTTGAGTGGGCC
ACGAATCCAAGTCAAGAGTGGGCCACGAATCCAAGTCAAGAGTGGGCCAC
GAAGCCGTTTGATATCGACTCGCTAGCAACTCTCACGCCACATTCCTCAC
CACCATCATAGACCACCCCACATCACCATGTGGAAGCCAGGCGGTCGGAA
ACCCGGCGGAGGGAAAGTAAGTAGCAAAAACAAAAGCTTCAGCAGCAGCA
AGTCCCCTACTGCAGGATCCGCTGCAGCCACAGCGCCACTCGTCTCGCCA
CCAGGGAGCAAAAATCTAAGCAAGTCGACTATGGGCATGAGATTCATGCA
AAAACGGATGCAACGGGACGCAGAGGCCAAGGAGCAGGCGGAGCACGCGA
AAGCGGCGCGAGCTGCCAAATGGAAGGTGGAACAGGAGGGACAGCAGCAG
CAGCAAGGCAAGGAGAGTGGTGGTGGAAGTGACAAATGTTCACCACAGTC
AATATCACATCATCAACAAGAGCAGCGACGGGTTGTGGTTTTCGAGGCGG
AGGAGACAGACCCGAAGATGCAAGTGCTAGGACGACGTGCATTCGGAGGG
TTTAACGACATGGTGGCGAGGATGTGGGAGCAAAATGCACAGCTGCTAGG
TTTGGGCAAAAAGAAGCGAAAGCGGGAAGGCGACGTGGATGAGTGGGAAG
TCGATGAGCGGGAGATGGTATCTCGGTACCAGAAACATGGACAGTTGCCG
ATTAGAACTGGTGACCGTGTGGGTGGAGGAGGTGGTGGAGGAGGAGGAGG
GGGGGGGAAGAGGGGAAGGTACCAGCAACCAGAAAAGAATGGGCGGCGAG
GAGGAGGGGGAAATGGTGATCACAAATAGCGAAATTATAGCAATCGGCAT
AGTGGGGATTCGGATAAAAAGCAGCGAAGTCATGGTTCGCATGTGCATGT
ATAATTTGACGAAAAGCAAAAAGCAAGGAAGCGCTTAGTTCGTACACACG
CACATCATATTCATGTTCCATCGCTCTTGGACCCCCCATCATCCCCCTAA
CCCCCTACGCTATAGTTTGTTTCCTTCTCGGTTTAGGCTATTCGTACGTG
CTCCAACCTTCTGACAGACCGGAGCTGGGCAAGCCGTCGATCTATGACTC
ACGCAGACCGTTGATACGCTTTTACCACGGTACAACACGGCATCTGTCCT
TGCGAGCATATGCGTTTATCTCCTTCTGTTAAGAGATATCATCATCTGCC
CACTGCCGTAAAAGAGATGGTGCTATAGTCCATTATTTATTCATGCTGTT
GACTAATGGGCC

Coding sequence (CDS) from alignment at scaffold_4:929367..930878+

>mRNA_2160 ID=mRNA_2160|Name=jgi.p|Nanoce1779_2|295456|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_4:929367..930878+ (Nannochloropsis oceanica)
ATGTGGAAGCCAGGCGGTCGGAAACCCGGCGGAGGGAAAGTAAGTAGCAA
AAACAAAAGCTTCAGCAGCAGCAAGTCCCCTACTGCAGGATCCGCTGCAG
CCACAGCGCCACTCGTCTCGCCACCAGGGAGCAAAAATCTAAGCAAGTCG
ACTATGGGCATGAGATTCATGCAAAAACGGATGCAACGGGACGCAGAGGC
CAAGGAGCAGGCGGAGCACGCGAAAGCGGCGCGAGCTGCCAAATGGAAGG
TGGAACAGGAGGGACAGCAGCAGCAGCAAGGCAAGGAGAGTGGTGGTGGA
AGTGACAAATGTTCACCACAGTCAATATCACATCATCAACAAGAGCAGCG
ACGGGTTGTGGTTTTCGAGGCGGAGGAGACAGACCCGAAGATGCAAGTGC
TAGGACGACGTGCATTCGGAGGGTTTAACGACATGGTGGCGAGGATGTGG
GAGCAAAATGCACAGCTGCTAGGTTTGGGCAAAAAGAAGCGAAAGCGGGA
AGGCGACGTGGATGAGTGGGAAGTCGATGAGCGGGAGATGGTATCTCGGT
ACCAGAAACATGGACAGTTGCCGATTAGAACTGGTGACCGTGTGGGTGGA
GGAGGTGGTGGAGGAGGAGGAGGGGGGGGGAAGAGGGGAAGGTACCAGCA
ACCAGAAAAGAATGGGCGGCGAGGAGGAGGGGGAAATGGTGATCACAAAT
AG

Synonyms

Publications