jgi.p|Nanoce1779_2|563785, mRNA_2159 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|563785
Unique NamemRNA_2159
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length786
Alignment locationscaffold_4:928298..929083 +

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Properties
Property NameValue
TranscriptId563871
TrackFilteredModels2
ProteinId563785
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:928298..929083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563785gene_2159Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563785mRNA_2159-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2159CDS_2159Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2159 ID=mRNA_2159|Name=jgi.p|Nanoce1779_2|563785|organism=Nannochloropsis oceanica|type=mRNA|length=786bp
ATGTGGGACTCTTTCTCGTTCCCCTCCTCTCCTCTACGGGCTAAAAGCAT
CCAGCACTCTGACTTCACCCATCTCTTGCTCGCATTAGTATTGATGTGCA
AGGCATACATAATTGTCTCGTGGTCTATGAGCAAGTGTTGCCTCATCGGT
TTCTTGAAGGGAAAAGTCAAGGCCTCTACTGTCATTTTATGGAGGAAAGA
TCGTTTTGCCGTCGTGTATGAGAAAGACGCAGTGACAAGAGAGCTGGTAC
CCGTCGAGATGTCCACGACCTTTTTCCAGGAACAGAGAGGGGATTGGTTG
AACCTTGTGAGGCCGAGGGGATACTTGACTGCACGGTTGCTCTTTCACGG
CATGCCGTTGTATGTTGTGAATACGCATTTAAATTTGGGAGAACAAGGCT
ATAGACAACGGCAGGTGGAGGAGCTGACGAGGCATTGTCAGGTACTTGGG
GAGGAAGGATCAGTTGTGGTGTGTGGTGACTTTAACGTGACTCCTGACAG
TGAGGAAGTGCAGTTACTGTGTCGCAGGGCAGGGTTAAAGGACGCGTTGG
CCGAGAAGGGCTGCGTGGAACCAACGTGGTCGAGTCGGAATCCCTTGACG
CATGGGGTTCTGCGTGAGTGTGATCATAGGTGCGATTTTATTTTTTATCG
AGGGTTGTTAGGGACAGGAGGGCATAGGATGGTAAATCGACGGTGTCGAT
TAGCTTTGCCATTTTGGGGTAATACGTGGTTGAGCGATCATTTCGGGATT
GTCCTTGATCTTGTGTTGGAGCCTTCGATGACTTAA
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protein sequence of jgi.p|Nanoce1779_2|563785

>mRNA_2159-protein ID=mRNA_2159-protein|Name=jgi.p|Nanoce1779_2|563785|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MWDSFSFPSSPLRAKSIQHSDFTHLLLALVLMCKAYIIVSWSMSKCCLIG
FLKGKVKASTVILWRKDRFAVVYEKDAVTRELVPVEMSTTFFQEQRGDWL
NLVRPRGYLTARLLFHGMPLYVVNTHLNLGEQGYRQRQVEELTRHCQVLG
EEGSVVVCGDFNVTPDSEEVQLLCRRAGLKDALAEKGCVEPTWSSRNPLT
HGVLRECDHRCDFIFYRGLLGTGGHRMVNRRCRLALPFWGNTWLSDHFGI
VLDLVLEPSMT*
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mRNA from alignment at scaffold_4:928298..929083+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2159 ID=mRNA_2159|Name=jgi.p|Nanoce1779_2|563785|organism=Nannochloropsis oceanica|type=mRNA|length=786bp|location=Sequence derived from alignment at scaffold_4:928298..929083+ (Nannochloropsis oceanica)
ATGTGGGACTCTTTCTCGTTCCCCTCCTCTCCTCTACGGGCTAAAAGCAT
CCAGCACTCTGACTTCACCCATCTCTTGCTCGCATTAGTATTGATGTGCA
AGGCATACATAATTGTCTCGTGGTCTATGAGCAAGTGTTGCCTCATCGGT
TTCTTGAAGGGAAAAGTCAAGGCCTCTACTGTCATTTTATGGAGGAAAGA
TCGTTTTGCCGTCGTGTATGAGAAAGACGCAGTGACAAGAGAGCTGGTAC
CCGTCGAGATGTCCACGACCTTTTTCCAGGAACAGAGAGGGGATTGGTTG
AACCTTGTGAGGCCGAGGGGATACTTGACTGCACGGTTGCTCTTTCACGG
CATGCCGTTGTATGTTGTGAATACGCATTTAAATTTGGGAGAACAAGGCT
ATAGACAACGGCAGGTGGAGGAGCTGACGAGGCATTGTCAGGTACTTGGG
GAGGAAGGATCAGTTGTGGTGTGTGGTGACTTTAACGTGACTCCTGACAG
TGAGGAAGTGCAGTTACTGTGTCGCAGGGCAGGGTTAAAGGACGCGTTGG
CCGAGAAGGGCTGCGTGGAACCAACGTGGTCGAGTCGGAATCCCTTGACG
CATGGGGTTCTGCGTGAGTGTGATCATAGGTGCGATTTTATTTTTTATCG
AGGGTTGTTAGGGACAGGAGGGCATAGGATGGTAAATCGACGGTGTCGAT
TAGCTTTGCCATTTTGGGGTAATACGTGGTTGAGCGATCATTTCGGGATT
GTCCTTGATCTTGTGTTGGAGCCTTCGATGACTTAA
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Coding sequence (CDS) from alignment at scaffold_4:928298..929083+

>mRNA_2159 ID=mRNA_2159|Name=jgi.p|Nanoce1779_2|563785|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at scaffold_4:928298..929083+ (Nannochloropsis oceanica)
ATGTGGGACTCTTTCTCGTTCCCCTCCTCTCCTCTACGGGCTAAAAGCAT
CCAGCACTCTGACTTCACCCATCTCTTGCTCGCATTAGTATTGATGTGCA
AGGCATACATAATTGTCTCGTGGTCTATGAGCAAGTGTTGCCTCATCGGT
TTCTTGAAGGGAAAAGTCAAGGCCTCTACTGTCATTTTATGGAGGAAAGA
TCGTTTTGCCGTCGTGTATGAGAAAGACGCAGTGACAAGAGAGCTGGTAC
CCGTCGAGATGTCCACGACCTTTTTCCAGGAACAGAGAGGGGATTGGTTG
AACCTTGTGAGGCCGAGGGGATACTTGACTGCACGGTTGCTCTTTCACGG
CATGCCGTTGTATGTTGTGAATACGCATTTAAATTTGGGAGAACAAGGCT
ATAGACAACGGCAGGTGGAGGAGCTGACGAGGCATTGTCAGGTACTTGGG
GAGGAAGGATCAGTTGTGGTGTGTGGTGACTTTAACGTGACTCCTGACAG
TGAGGAAGTGCAGTTACTGTGTCGCAGGGCAGGGTTAAAGGACGCGTTGG
CCGAGAAGGGCTGCGTGGAACCAACGTGGTCGAGTCGGAATCCCTTGACG
CATGGGGTTCTGCGTGAGTGTGATCATAGGTGCGATTTTATTTTTTATCG
AGGGTTGTTAGGGACAGGAGGGCATAGGATGGTAAATCGACGGTGTCGAT
TAGCTTTGCCATTTTGGGGTAATACGTGGTTGAGCGATCATTTCGGGATT
GTCCTTGATCTTGTGTTGGAGCCTTCGATGACTTAA
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Synonyms
Publications