jgi.p|Nanoce1779_2|579280, mRNA_2157 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579280
Unique NamemRNA_2157
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length732
Alignment locationscaffold_4:924502..925478 +

Link to JBrowse

Properties
Property NameValue
TranscriptId579366
TrackFilteredModels2
ProteinId579280
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:924502..925478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579280gene_2157Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579280mRNA_2157-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2157CDS_2157Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2157 ID=mRNA_2157|Name=jgi.p|Nanoce1779_2|579280|organism=Nannochloropsis oceanica|type=mRNA|length=732bp
CAGGATGGCGACACCAATCGGCGGGCCGCCTGTGCAAGACGTCCCTCCGC
CCGGAGGATATCCCAAGATTTTTTACAAGACCCGCCTCGCTTCCCGGGGC
CCGCCAAGCTGGGCAATATGGACTGGGGCCATTCTGGTGTGTGCGTACGG
CTTCGTCCAAGTCGGTCGCACCAACACGGAACGTCGTTTCTGGGCCGACA
AGAAACGCGAGCAAAAACTCGCCTTGATTCCGTTGTTGCAAGCAGACGAG
GACCTGACCTGGATCGAAAACTACAATAAGGCATTGGTGGAGGAAGCGGA
GATTATGAAGCATGTCCCGAACTGGAAGGTGGGCGAGAGTGTATATAAGA
CCAAGGTGACTTGGATCCCGCCATCGGTGTCGGCATTTAGGGGGGGAAAG
TAGAAGAGGGTAGGGAAGGAGGACGAGGAGATGAGGAATGACCTTGTGGA
AAGAAGAACAAGGAAGTTGAATAGTGGAATGAAAGGGGATAGGGGAGGGG
AGAGCTGGGGATGCAGAGGTGGAGGGATGAAGGCAGGTTGGGATGCGATT
TGTGAGAAGTAGTGAGTTCGAGATGGCGGATCTTAATGCTCTGTTATCGA
AAGTGTACTGGTGTTTGTTACTTTGTTTGTGTGACAAAGCAGAGCGGGAA
ACAAGTGAACGAAATTACCGCCCCCAAAAACTTTTTTGGGGAAAGAGAAT
TGAAGGAAAGAACGACGATGACGAGTTTTACC
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protein sequence of jgi.p|Nanoce1779_2|579280

>mRNA_2157-protein ID=mRNA_2157-protein|Name=jgi.p|Nanoce1779_2|579280|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MATPIGGPPVQDVPPPGGYPKIFYKTRLASRGPPSWAIWTGAILVCAYGF
VQVGRTNTERRFWADKKREQKLALIPLLQADEDLTWIENYNKALVEEAEI
MKHVPNWKVGESVYKTKVTWIPPSVSAFRGGK*
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mRNA from alignment at scaffold_4:924502..925478+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2157 ID=mRNA_2157|Name=jgi.p|Nanoce1779_2|579280|organism=Nannochloropsis oceanica|type=mRNA|length=977bp|location=Sequence derived from alignment at scaffold_4:924502..925478+ (Nannochloropsis oceanica)
CAGGATGGCGACACCAATCGGCGGGCCGCCTGTGCAAGACGTCCCTCCGC
CCGGAGGATATCCCAAGGTAAGCCCAAAAAGCAGACTTGTTGCTCTCCCT
TCTCCCTGCTCTCCCCCATTCCACCTCCCGGCTTGCCTATGTCCACGTCG
TCTCTGTCCACTATGGGTACCGCAGGCCGTGCTTGCGTTCCCATTATCCC
TGCAGTATATATCCACGCCTCTCCTTCCTCTCTTCCCCCTCTTTCATCAC
CCGCATCCTCCTTCCCACCTCTTCCCCCATTCCTGACCACGCCCCAAATC
CCACCATTTTAGATTTTTTACAAGACCCGCCTCGCTTCCCGGGGCCCGCC
AAGCTGGGCAATATGGACTGGGGCCATTCTGGTGTGTGCGTACGGCTTCG
TCCAAGTCGGTCGCACCAACACGGAACGTCGTTTCTGGGCCGACAAGAAA
CGCGAGCAAAAACTCGCCTTGATTCCGTTGTTGCAAGCAGACGAGGACCT
GACCTGGATCGAAAACTACAATAAGGCATTGGTGGAGGAAGCGGAGATTA
TGAAGCATGTCCCGAACTGGAAGGTGGGCGAGAGTGTATATAAGACCAAG
GTGACTTGGATCCCGCCATCGGTGTCGGCATTTAGGGGGGGAAAGTAGAA
GAGGGTAGGGAAGGAGGACGAGGAGATGAGGAATGACCTTGTGGAAAGAA
GAACAAGGAAGTTGAATAGTGGAATGAAAGGGGATAGGGGAGGGGAGAGC
TGGGGATGCAGAGGTGGAGGGATGAAGGCAGGTTGGGATGCGATTTGTGA
GAAGTAGTGAGTTCGAGATGGCGGATCTTAATGCTCTGTTATCGAAAGTG
TACTGGTGTTTGTTACTTTGTTTGTGTGACAAAGCAGAGCGGGAAACAAG
TGAACGAAATTACCGCCCCCAAAAACTTTTTTGGGGAAAGAGAATTGAAG
GAAAGAACGACGATGACGAGTTTTACC
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Coding sequence (CDS) from alignment at scaffold_4:924502..925478+

>mRNA_2157 ID=mRNA_2157|Name=jgi.p|Nanoce1779_2|579280|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_4:924502..925478+ (Nannochloropsis oceanica)
ATGGCGACACCAATCGGCGGGCCGCCTGTGCAAGACGTCCCTCCGCCCGG
AGGATATCCCAAGATTTTTTACAAGACCCGCCTCGCTTCCCGGGGCCCGC
CAAGCTGGGCAATATGGACTGGGGCCATTCTGGTGTGTGCGTACGGCTTC
GTCCAAGTCGGTCGCACCAACACGGAACGTCGTTTCTGGGCCGACAAGAA
ACGCGAGCAAAAACTCGCCTTGATTCCGTTGTTGCAAGCAGACGAGGACC
TGACCTGGATCGAAAACTACAATAAGGCATTGGTGGAGGAAGCGGAGATT
ATGAAGCATGTCCCGAACTGGAAGGTGGGCGAGAGTGTATATAAGACCAA
GGTGACTTGGATCCCGCCATCGGTGTCGGCATTTAGGGGGGGAAAGTAGA
TGGCGACACCAATCGGCGGGCCGCCTGTGCAAGACGTCCCTCCGCCCGGA
GGATATCCCAAGATTTTTTACAAGACCCGCCTCGCTTCCCGGGGCCCGCC
AAGCTGGGCAATATGGACTGGGGCCATTCTGGTGTGTGCGTACGGCTTCG
TCCAAGTCGGTCGCACCAACACGGAACGTCGTTTCTGGGCCGACAAGAAA
CGCGAGCAAAAACTCGCCTTGATTCCGTTGTTGCAAGCAGACGAGGACCT
GACCTGGATCGAAAACTACAATAAGGCATTGGTGGAGGAAGCGGAGATTA
TGAAGCATGTCCCGAACTGGAAGGTGGGCGAGAGTGTATATAAGACCAAG
GTGACTTGGATCCCGCCATCGGTGTCGGCATTTAGGGGGGGAAAGTAG
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Synonyms
Publications