jgi.p|Nanoce1779_2|668847, mRNA_2156 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|668847
Unique Name	mRNA_2156
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1887
Alignment location	scaffold_4:922152..924038 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	668933
Track	FilteredModels2
ProteinId	668847

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:922152..924038 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668847	gene_2156	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668847	mRNA_2156-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2156	CDS_2156	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:922152..924038-
coding sequence from alignment at scaffold_4:922152..924038-

mRNA sequence

>mRNA_2156 ID=mRNA_2156|Name=jgi.p|Nanoce1779_2|668847|organism=Nannochloropsis oceanica|type=mRNA|length=1887bp
CAACCCCTGTTTTTCTCCGAGTTTCACATGCCACCCCCCTTTTCCTCCCA
CTCCCTCCGCCTTGGTTGCTTCCACGCACCACCGCATTGCCAAAAAATGA
TGGCAGGACAACCTGTTGGTATTGTGCCATCTCTGACATACATCGCCTTC
CCTTTGCTCCTCATTCCACCCCTACAAACATACAAGGGCGGGCTCCCGGG
GTTTGGTGCGGCCTGTTGCTTGCGCTTGCAGCCAACACACGCTCCAACAA
CAACCAACAGCCACTTCACACGACTGCGACCAACCCATATCTATGGCGAA
CGACGACGATGATCCATACCTGGCTGAGCTCCTTGACCTGGTCAAAGACG
ACGACGTCAAGCCCAACGGGAGCAGCAGCAGCAGTGCCACCGCTTCCTCC
TCCCAGTCGGCAACGAATGTTATGAAGCCCGCCTCGACCGTCGTTTCTTC
GCCTAGCCAATATCATGATTCGGATACACATAGGGAGACGTTGAAACTTC
TGTTGCAACTCAGCCCCGCGGGCGCCAACCTTCCTACGGCGGAAGACGTT
CAAAAAGCCTTTCGCACACTTTACCCACCCTTCCAAGCCCCCCAACAACT
TATAAATCTGGATGACAACGATGAAAAGGTTTTTGAAGTCAGTCCTTCTA
CAGTATCTACAGGAGGGGCCAGGAATGAACGTACCCCCCCAATACACCTG
GACGCAGTGCAAGAGGAGTTAGAGGAGCATCTGGGTGCGACGGACTTGTT
TGCTTTGAGGGACGTGATTCGGACACAGGTCGATGCCTGGCACGCGGGCA
AGCGCGCACTTCTGGAGATCGTGGCGGCCAAGGAACAGGAGCGGAAGAAT
TGGACAGAAGAGGAGGAGAAGAAAAAGGAAGCGGCGAAGCAGAAGCAGCA
GCAGAGGAAGACGGAGAAGGAAGCGATGGATGTTGATGACAAGAGTGACG
AGGATAAGGAGCAACTGAATGGCCTGTCACAATCTCAGCTCTCACAGTCG
CAGGCCTCTCAAGATGACGTCGACATTATCGACAAGAAACGAAAACGAGG
GACAGGTGTCGTAGGAGGGCGGGCCACTCTGCCCTTACGGCTACCAAAAG
CTGTTAGTGATAGCAGTACCTCCCGCTCATTCCTTGTCGAACTCGATGAG
AGAGACAAGGCTCAAGACCTAACAGGGGATAGTGGAGCAGTGGGGAGAGT
GCATGTGGAGAAAAAGAAGGGGATTATTCTAGATTTAAAGGGGCATCAGT
ATTTAGCGCATTTAAGGAGGTGTCCCACGTTGTTGTTGGTGAGTGTGGGG
GATGAAGAGGCAAAAGTAGAAGATGTTGTGGAGACATTGTGTGTGCTGAC
GCATCAGCATGATCAGCTAAAGGCAATGGGGGGAAAGGTTGTGAGTAGAG
CAGCAGGGGAGATCAAAGGAGAGGAAGGGGGGGAGGGAGGTGGATATGAA
TCGGAGCATTACCGGCCGAGTGATGACAGTGAGAATGAAGGGAAGAAAAA
GGGAGGAGGAGAGGGAGGGAGGAGAGGAGGGTGGGATGGAGGGGGAAGGA
CAGTTGCAAATAAGAGGAGCAGTGGCGGAGGCGGGGCGAAGAAGGGAAAG
TGTAAGGGAGGGAAGGGGGGAGGTGGAGGAGGAGGAGGAGGAGGAAGTCG
GAAGAGCATGGGTTCGTCATTGGGGGCCGGAAAAGGAAAGAAGGCTTCGG
CGAGCAGTAAAAGGCAGGGTCCGCGGAAGGTGTCGCTGCGAGCGTTGAAG
CAACAAAAGAAGGTGAAACAGCAGAAGGGGGGTGGTTATGACGACGATGA
TAGTGAGGACGAGGAGGAGGACGAGGAGGAGTCGTTCCAGGAGCCGGATG
ACGACGATGACAGTGACTGTAGCATATAGAAAAGCTT

protein sequence of jgi.p|Nanoce1779_2|668847

>mRNA_2156-protein ID=mRNA_2156-protein|Name=jgi.p|Nanoce1779_2|668847|organism=Nannochloropsis oceanica|type=polypeptide|length=529bp
MANDDDDPYLAELLDLVKDDDVKPNGSSSSSATASSSQSATNVMKPASTV
VSSPSQYHDSDTHRETLKLLLQLSPAGANLPTAEDVQKAFRTLYPPFQAP
QQLINLDDNDEKVFEVSPSTVSTGGARNERTPPIHLDAVQEELEEHLGAT
DLFALRDVIRTQVDAWHAGKRALLEIVAAKEQERKNWTEEEEKKKEAAKQ
KQQQRKTEKEAMDVDDKSDEDKEQLNGLSQSQLSQSQASQDDVDIIDKKR
KRGTGVVGGRATLPLRLPKAVSDSSTSRSFLVELDERDKAQDLTGDSGAV
GRVHVEKKKGIILDLKGHQYLAHLRRCPTLLLVSVGDEEAKVEDVVETLC
VLTHQHDQLKAMGGKVVSRAAGEIKGEEGGEGGGYESEHYRPSDDSENEG
KKKGGGEGGRRGGWDGGGRTVANKRSSGGGGAKKGKCKGGKGGGGGGGGG
GSRKSMGSSLGAGKGKKASASSKRQGPRKVSLRALKQQKKVKQQKGGGYD
DDDSEDEEEDEEESFQEPDDDDDSDCSI*

mRNA from alignment at scaffold_4:922152..924038-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2156 ID=mRNA_2156|Name=jgi.p|Nanoce1779_2|668847|organism=Nannochloropsis oceanica|type=mRNA|length=1887bp|location=Sequence derived from alignment at scaffold_4:922152..924038- (Nannochloropsis oceanica)
CAACCCCTGTTTTTCTCCGAGTTTCACATGCCACCCCCCTTTTCCTCCCA
CTCCCTCCGCCTTGGTTGCTTCCACGCACCACCGCATTGCCAAAAAATGA
TGGCAGGACAACCTGTTGGTATTGTGCCATCTCTGACATACATCGCCTTC
CCTTTGCTCCTCATTCCACCCCTACAAACATACAAGGGCGGGCTCCCGGG
GTTTGGTGCGGCCTGTTGCTTGCGCTTGCAGCCAACACACGCTCCAACAA
CAACCAACAGCCACTTCACACGACTGCGACCAACCCATATCTATGGCGAA
CGACGACGATGATCCATACCTGGCTGAGCTCCTTGACCTGGTCAAAGACG
ACGACGTCAAGCCCAACGGGAGCAGCAGCAGCAGTGCCACCGCTTCCTCC
TCCCAGTCGGCAACGAATGTTATGAAGCCCGCCTCGACCGTCGTTTCTTC
GCCTAGCCAATATCATGATTCGGATACACATAGGGAGACGTTGAAACTTC
TGTTGCAACTCAGCCCCGCGGGCGCCAACCTTCCTACGGCGGAAGACGTT
CAAAAAGCCTTTCGCACACTTTACCCACCCTTCCAAGCCCCCCAACAACT
TATAAATCTGGATGACAACGATGAAAAGGTTTTTGAAGTCAGTCCTTCTA
CAGTATCTACAGGAGGGGCCAGGAATGAACGTACCCCCCCAATACACCTG
GACGCAGTGCAAGAGGAGTTAGAGGAGCATCTGGGTGCGACGGACTTGTT
TGCTTTGAGGGACGTGATTCGGACACAGGTCGATGCCTGGCACGCGGGCA
AGCGCGCACTTCTGGAGATCGTGGCGGCCAAGGAACAGGAGCGGAAGAAT
TGGACAGAAGAGGAGGAGAAGAAAAAGGAAGCGGCGAAGCAGAAGCAGCA
GCAGAGGAAGACGGAGAAGGAAGCGATGGATGTTGATGACAAGAGTGACG
AGGATAAGGAGCAACTGAATGGCCTGTCACAATCTCAGCTCTCACAGTCG
CAGGCCTCTCAAGATGACGTCGACATTATCGACAAGAAACGAAAACGAGG
GACAGGTGTCGTAGGAGGGCGGGCCACTCTGCCCTTACGGCTACCAAAAG
CTGTTAGTGATAGCAGTACCTCCCGCTCATTCCTTGTCGAACTCGATGAG
AGAGACAAGGCTCAAGACCTAACAGGGGATAGTGGAGCAGTGGGGAGAGT
GCATGTGGAGAAAAAGAAGGGGATTATTCTAGATTTAAAGGGGCATCAGT
ATTTAGCGCATTTAAGGAGGTGTCCCACGTTGTTGTTGGTGAGTGTGGGG
GATGAAGAGGCAAAAGTAGAAGATGTTGTGGAGACATTGTGTGTGCTGAC
GCATCAGCATGATCAGCTAAAGGCAATGGGGGGAAAGGTTGTGAGTAGAG
CAGCAGGGGAGATCAAAGGAGAGGAAGGGGGGGAGGGAGGTGGATATGAA
TCGGAGCATTACCGGCCGAGTGATGACAGTGAGAATGAAGGGAAGAAAAA
GGGAGGAGGAGAGGGAGGGAGGAGAGGAGGGTGGGATGGAGGGGGAAGGA
CAGTTGCAAATAAGAGGAGCAGTGGCGGAGGCGGGGCGAAGAAGGGAAAG
TGTAAGGGAGGGAAGGGGGGAGGTGGAGGAGGAGGAGGAGGAGGAAGTCG
GAAGAGCATGGGTTCGTCATTGGGGGCCGGAAAAGGAAAGAAGGCTTCGG
CGAGCAGTAAAAGGCAGGGTCCGCGGAAGGTGTCGCTGCGAGCGTTGAAG
CAACAAAAGAAGGTGAAACAGCAGAAGGGGGGTGGTTATGACGACGATGA
TAGTGAGGACGAGGAGGAGGACGAGGAGGAGTCGTTCCAGGAGCCGGATG
ACGACGATGACAGTGACTGTAGCATATAGAAAAGCTT

Coding sequence (CDS) from alignment at scaffold_4:922152..924038-

>mRNA_2156 ID=mRNA_2156|Name=jgi.p|Nanoce1779_2|668847|organism=Nannochloropsis oceanica|type=CDS|length=1587bp|location=Sequence derived from alignment at scaffold_4:922152..924038- (Nannochloropsis oceanica)
ATGGCGAACGACGACGATGATCCATACCTGGCTGAGCTCCTTGACCTGGT
CAAAGACGACGACGTCAAGCCCAACGGGAGCAGCAGCAGCAGTGCCACCG
CTTCCTCCTCCCAGTCGGCAACGAATGTTATGAAGCCCGCCTCGACCGTC
GTTTCTTCGCCTAGCCAATATCATGATTCGGATACACATAGGGAGACGTT
GAAACTTCTGTTGCAACTCAGCCCCGCGGGCGCCAACCTTCCTACGGCGG
AAGACGTTCAAAAAGCCTTTCGCACACTTTACCCACCCTTCCAAGCCCCC
CAACAACTTATAAATCTGGATGACAACGATGAAAAGGTTTTTGAAGTCAG
TCCTTCTACAGTATCTACAGGAGGGGCCAGGAATGAACGTACCCCCCCAA
TACACCTGGACGCAGTGCAAGAGGAGTTAGAGGAGCATCTGGGTGCGACG
GACTTGTTTGCTTTGAGGGACGTGATTCGGACACAGGTCGATGCCTGGCA
CGCGGGCAAGCGCGCACTTCTGGAGATCGTGGCGGCCAAGGAACAGGAGC
GGAAGAATTGGACAGAAGAGGAGGAGAAGAAAAAGGAAGCGGCGAAGCAG
AAGCAGCAGCAGAGGAAGACGGAGAAGGAAGCGATGGATGTTGATGACAA
GAGTGACGAGGATAAGGAGCAACTGAATGGCCTGTCACAATCTCAGCTCT
CACAGTCGCAGGCCTCTCAAGATGACGTCGACATTATCGACAAGAAACGA
AAACGAGGGACAGGTGTCGTAGGAGGGCGGGCCACTCTGCCCTTACGGCT
ACCAAAAGCTGTTAGTGATAGCAGTACCTCCCGCTCATTCCTTGTCGAAC
TCGATGAGAGAGACAAGGCTCAAGACCTAACAGGGGATAGTGGAGCAGTG
GGGAGAGTGCATGTGGAGAAAAAGAAGGGGATTATTCTAGATTTAAAGGG
GCATCAGTATTTAGCGCATTTAAGGAGGTGTCCCACGTTGTTGTTGGTGA
GTGTGGGGGATGAAGAGGCAAAAGTAGAAGATGTTGTGGAGACATTGTGT
GTGCTGACGCATCAGCATGATCAGCTAAAGGCAATGGGGGGAAAGGTTGT
GAGTAGAGCAGCAGGGGAGATCAAAGGAGAGGAAGGGGGGGAGGGAGGTG
GATATGAATCGGAGCATTACCGGCCGAGTGATGACAGTGAGAATGAAGGG
AAGAAAAAGGGAGGAGGAGAGGGAGGGAGGAGAGGAGGGTGGGATGGAGG
GGGAAGGACAGTTGCAAATAAGAGGAGCAGTGGCGGAGGCGGGGCGAAGA
AGGGAAAGTGTAAGGGAGGGAAGGGGGGAGGTGGAGGAGGAGGAGGAGGA
GGAAGTCGGAAGAGCATGGGTTCGTCATTGGGGGCCGGAAAAGGAAAGAA
GGCTTCGGCGAGCAGTAAAAGGCAGGGTCCGCGGAAGGTGTCGCTGCGAG
CGTTGAAGCAACAAAAGAAGGTGAAACAGCAGAAGGGGGGTGGTTATGAC
GACGATGATAGTGAGGACGAGGAGGAGGACGAGGAGGAGTCGTTCCAGGA
GCCGGATGACGACGATGACAGTGACTGTAGCATATAG

Synonyms

Publications