jgi.p|Nanoce1779_2|579273, mRNA_2155 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579273
Unique NamemRNA_2155
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length535
Alignment locationscaffold_4:921701..922235 +

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Properties
Property NameValue
TranscriptId579359
TrackFilteredModels2
ProteinId579273
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:921701..922235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579273gene_2155Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579273mRNA_2155-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2155CDS_2155Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2155 ID=mRNA_2155|Name=jgi.p|Nanoce1779_2|579273|organism=Nannochloropsis oceanica|type=mRNA|length=535bp
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATAGAGTTGAA
GTAGCCGACACGACAGCCCGAAATAAAATTATAGAAGGGTCAGGAAGGTG
AGCCCACATCCCAAGAGCCGCCACATAAGAGGTACTAAAACAGATTGATG
GACCGAAGACAGGTGACTCAGTCTTGTCATGGTCGTCGTATCGCGTGATT
CACCTTCACTTGCGCCGTTACATTACTTCTGTCTGTTTTTGGCTTTGGTT
TGTACAGCTTTGCATTTGCTCGTCGTCACTGTTGAGTTGGATTGGGTTCT
TAAAAAACACTTTCGCATTCGTTTTCTGATTCTGCTTTCTCTCCTGTTTC
TCTCCTCTTTACTTTGCTTTTTTACTGTAACTTCCTTCCAGTTTTTCCTC
GCCTTATTGTAAGGGCATGGAAATAATTAAGAATTGTACATTAGCATGTT
TAAGCTTTTCTATATGCTACAGTCACTGTCATCGTCGTCATCCGGCTCCT
GGAACGACTCCTCCTCGTCCTCCTCCTCGTCCTCA
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protein sequence of jgi.p|Nanoce1779_2|579273

>mRNA_2155-protein ID=mRNA_2155-protein|Name=jgi.p|Nanoce1779_2|579273|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MVVVSRDSPSLAPLHYFCLFLALVCTALHLLVVTVELDWVLKKHFRIRFL
ILLSLLFLSSLLCFFTVTSFQFFLALL*
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mRNA from alignment at scaffold_4:921701..922235+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2155 ID=mRNA_2155|Name=jgi.p|Nanoce1779_2|579273|organism=Nannochloropsis oceanica|type=mRNA|length=535bp|location=Sequence derived from alignment at scaffold_4:921701..922235+ (Nannochloropsis oceanica)
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATAGAGTTGAA
GTAGCCGACACGACAGCCCGAAATAAAATTATAGAAGGGTCAGGAAGGTG
AGCCCACATCCCAAGAGCCGCCACATAAGAGGTACTAAAACAGATTGATG
GACCGAAGACAGGTGACTCAGTCTTGTCATGGTCGTCGTATCGCGTGATT
CACCTTCACTTGCGCCGTTACATTACTTCTGTCTGTTTTTGGCTTTGGTT
TGTACAGCTTTGCATTTGCTCGTCGTCACTGTTGAGTTGGATTGGGTTCT
TAAAAAACACTTTCGCATTCGTTTTCTGATTCTGCTTTCTCTCCTGTTTC
TCTCCTCTTTACTTTGCTTTTTTACTGTAACTTCCTTCCAGTTTTTCCTC
GCCTTATTGTAAGGGCATGGAAATAATTAAGAATTGTACATTAGCATGTT
TAAGCTTTTCTATATGCTACAGTCACTGTCATCGTCGTCATCCGGCTCCT
GGAACGACTCCTCCTCGTCCTCCTCCTCGTCCTCA
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Coding sequence (CDS) from alignment at scaffold_4:921701..922235+

>mRNA_2155 ID=mRNA_2155|Name=jgi.p|Nanoce1779_2|579273|organism=Nannochloropsis oceanica|type=CDS|length=234bp|location=Sequence derived from alignment at scaffold_4:921701..922235+ (Nannochloropsis oceanica)
ATGGTCGTCGTATCGCGTGATTCACCTTCACTTGCGCCGTTACATTACTT
CTGTCTGTTTTTGGCTTTGGTTTGTACAGCTTTGCATTTGCTCGTCGTCA
CTGTTGAGTTGGATTGGGTTCTTAAAAAACACTTTCGCATTCGTTTTCTG
ATTCTGCTTTCTCTCCTGTTTCTCTCCTCTTTACTTTGCTTTTTTACTGT
AACTTCCTTCCAGTTTTTCCTCGCCTTATTGTAA
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Synonyms
Publications