jgi.p|Nanoce1779_2|579268, mRNA_2154 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579268
Unique Name	mRNA_2154
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1763
Alignment location	scaffold_4:919709..921585 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579354
Track	FilteredModels2
ProteinId	579268

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:919709..921585 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579268	gene_2154	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579268	mRNA_2154-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2154	CDS_2154	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:919709..921585+
coding sequence from alignment at scaffold_4:919709..921585+

mRNA sequence

>mRNA_2154 ID=mRNA_2154|Name=jgi.p|Nanoce1779_2|579268|organism=Nannochloropsis oceanica|type=mRNA|length=1763bp
CCGCCGTCGGATAACTGCTATAGCTGCAATATCTCCAAGAGACACTGTTT
CAAGGGGGGGCTCCACGATAAAGGACAATTGGAGTGACTTTTCCCGCCTT
CCTCCATCCATGTCGCTGTTGCACGAGACGCTGAGGATTTAAGATTCAGT
GTCTCGATTTTCAGGATCACTATGAGAACAAAATTTCATAGGGGGAGGAG
TAAATTGTGGGAAACTACAGGAAAAAGAATTGACATGTTCGGAACAAGAC
ACTCAACACAACGCATCATACTTCCCTCAAGATCCCTCCGCAGGTAGCTA
CGCGGGTTCCCACCCTTTGGTTTAAGTGAGCAGTACCAGCCAGCACGCTC
TTTCTACAAATACTCCCTCCCATCTCTCCCCTCCTTCCGTAGAACAACAC
ACCAGACATGAGCAACGGGGACGGAAAGAAGCAGGTTTTAACGGATCCCT
TCCGTGGGTTTGGGACCATTGCCATCCACGCCGGGCAGGAGCCGGATCCT
GGGACGGGTGCAGTGGTCCCCGCTATTTCGCTCGCTACAACGTTTGCTCA
AGCAAGCCCAGGGACCAAGTACGGAACGGACCTGCCCAATAGCTTTGGGA
AAGGCTTCGAGTACAGCAGGACGGGAAACCCAACCCGAGGCGCATTTGAG
CGGGCTATGGCCGCGGTGGAGCATGGTAAACACGCCTTGGCATTCGCCTC
GGGTTTGGCTGCGACTTCAGCCGTCGTTCATCTGCTCGAGACGGGGCAGC
ATGTAGTAATTGTGGACGACGTCTATGGAGGGACACAACGTTACTTCCGT
AAGATTGCCAAGCCCACCTATAACATCGACTTCAGCTTTGTGGATTTCAA
CGATACCACCGCCCTGGAAGCAGCTTTTCGACCAAATCAGACCAAACTAA
TTTGGCTCGAGACTCCTACCAATCCCACCCTCAAACTGTCCGATATTGCC
GCCACTGCCGCCATCGCCAAGAAGCACGGCGCCCTCTTCGTGGTGGACAA
CACCTTTCTCTCACCCTACTTCCAGAACCCCCTCGACCTCGGCGCGGACA
TGGTCGTGCACAGCGTCACTAAGTACATTGGCGGCCACTCCGATGTCGTT
GGTGGAGTCATTATCACCAACTCACCCGACTTGAACGAGAAACTGCGGTT
TATACAAAACTCAGTCGGGGCCGTGCCCTCCCCCTTCGATTGCTTCATGG
CCCTCCGCGGCCTCAAGACACTCCACGTCCGCCTCGAAGCTGCTGCACGC
AATGCCCTTGCGATTGCCACTTATTTGGGGCAACATTCTGGAGTGACCAA
GGTTTTGTTTCCTGGCCTTCCATCCCACCCTCAGTTTGAACTGGCGAAGA
AGCAACAGCATGGGCCCGGGGCGATGGTTACATTTTATGTTGGGGGGGAG
GTGAGCAACGCCCGAAGATTCTTGGAGTCATTGCAGGTCTTTATACTGGC
GGAGAGCCTGGGAGCGGTTGAATCCTTGGCGGAGTCCCCGGCAATCATGA
CGCATGCCTCAGTCCCACCTGAAGTGAGGAAGGCGTTGGGCATTGATGAT
ACGTTGGTGAGGCTATCGGTGGGGATTGAGAGCTTGCCTGATTTAATTGA
AGACCTGGACCAGGCCTTGAATAAGGCCGCGGCAGTGACGGCCTAGGAAG
GAAAGGGGGGTTGGGGGGGTGGATGGGAGGGGTGGTTGAAGTGCGTCGAA
GCGCGTGGAGATGGGGAGGAAAAAGAGAAAGGAGGCGTCGAAGAGAGAGG
GGGGGGGGGGGGT

protein sequence of jgi.p|Nanoce1779_2|579268

>mRNA_2154-protein ID=mRNA_2154-protein|Name=jgi.p|Nanoce1779_2|579268|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MSNGDGKKQVLTDPFRGFGTIAIHAGQEPDPGTGAVVPAISLATTFAQAS
PGTKYGTDLPNSFGKGFEYSRTGNPTRGAFERAMAAVEHGKHALAFASGL
AATSAVVHLLETGQHVVIVDDVYGGTQRYFRKIAKPTYNIDFSFVDFNDT
TALEAAFRPNQTKLIWLETPTNPTLKLSDIAATAAIAKKHGALFVVDNTF
LSPYFQNPLDLGADMVVHSVTKYIGGHSDVVGGVIITNSPDLNEKLRFIQ
NSVGAVPSPFDCFMALRGLKTLHVRLEAAARNALAIATYLGQHSGVTKVL
FPGLPSHPQFELAKKQQHGPGAMVTFYVGGEVSNARRFLESLQVFILAES
LGAVESLAESPAIMTHASVPPEVRKALGIDDTLVRLSVGIESLPDLIEDL
DQALNKAAAVTA*

mRNA from alignment at scaffold_4:919709..921585+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2154 ID=mRNA_2154|Name=jgi.p|Nanoce1779_2|579268|organism=Nannochloropsis oceanica|type=mRNA|length=1877bp|location=Sequence derived from alignment at scaffold_4:919709..921585+ (Nannochloropsis oceanica)
CCGCCGTCGGATAACTGCTATAGCTGCAATATCTCCAAGAGACACTGTTT
CAAGGGGGGGCTCCACGATAAAGGACAATTGGAGTGACTTTTCCCGCCTT
CCTCCATCCATGTCGCTGTTGCACGAGACGCTGAGGATTTAAGATTCAGT
GTCTCGATTTTCAGGATCACTATGAGAACAAAATTTCATAGGGGGAGGAG
TAAATTGTGGGAAACTACAGGAAAAAGAATTGACATGTTCGGAACAAGAC
ACTCAACACAACGCATCATACTTCCCTCAAGATCCCTCCGCAGGTAGCTA
CGCGGGTTCCCACCCTTTGGTTTAAGTGAGCAGTACCAGCCAGCACGCTC
TTTCTACAAATACTCCCTCCCATCTCTCCCCTCCTTCCGTAGAACAACAC
ACCAGACATGAGCAACGGGGACGGAAAGAAGCAGGTTTTAACGGATCCCT
TCCGTGGGTTTGGGACCATTGCCATCCACGCCGGGCAGGAGCCGGATCCT
GGGACGGGTGCAGTGGTCCCCGCTATTTCGCTCGCTACAACGTTTGCTCA
AGCAAGCCCAGGGACCAAGTACGGAACGGACCTGCCCAATAGCTTTGGGA
AAGGCTTCGAGTACAGCAGGACGGGAAACCCAACCCGAGGCGCATTTGAG
CGGGCTATGGCCGCGGTGGAGCATGGTAAACACGCCTTGGCATTCGCCTC
GGGTTTGGCTGCGACTTCAGCCGTCGTTCATCTGCTCGAGACGGGGCAGC
ATGTAGTAATTGTGGACGACGTCTATGGAGGGACACAAGTAAGATGATTC
GTATTCATTCATGTGGGTCACATATTATCTCTAACGTCAATCTGTTTTCA
AACTGCAAGCTCGTCTAACCCATGCACCCACATACCCCGACTCTTGCAAA
AGCGTTACTTCCGTAAGATTGCCAAGCCCACCTATAACATCGACTTCAGC
TTTGTGGATTTCAACGATACCACCGCCCTGGAAGCAGCTTTTCGACCAAA
TCAGACCAAACTAATTTGGCTCGAGACTCCTACCAATCCCACCCTCAAAC
TGTCCGATATTGCCGCCACTGCCGCCATCGCCAAGAAGCACGGCGCCCTC
TTCGTGGTGGACAACACCTTTCTCTCACCCTACTTCCAGAACCCCCTCGA
CCTCGGCGCGGACATGGTCGTGCACAGCGTCACTAAGTACATTGGCGGCC
ACTCCGATGTCGTTGGTGGAGTCATTATCACCAACTCACCCGACTTGAAC
GAGAAACTGCGGTTTATACAAAACTCAGTCGGGGCCGTGCCCTCCCCCTT
CGATTGCTTCATGGCCCTCCGCGGCCTCAAGACACTCCACGTCCGCCTCG
AAGCTGCTGCACGCAATGCCCTTGCGATTGCCACTTATTTGGGGCAACAT
TCTGGAGTGACCAAGGTTTTGTTTCCTGGCCTTCCATCCCACCCTCAGTT
TGAACTGGCGAAGAAGCAACAGCATGGGCCCGGGGCGATGGTTACATTTT
ATGTTGGGGGGGAGGTGAGCAACGCCCGAAGATTCTTGGAGTCATTGCAG
GTCTTTATACTGGCGGAGAGCCTGGGAGCGGTTGAATCCTTGGCGGAGTC
CCCGGCAATCATGACGCATGCCTCAGTCCCACCTGAAGTGAGGAAGGCGT
TGGGCATTGATGATACGTTGGTGAGGCTATCGGTGGGGATTGAGAGCTTG
CCTGATTTAATTGAAGACCTGGACCAGGCCTTGAATAAGGCCGCGGCAGT
GACGGCCTAGGAAGGAAAGGGGGGTTGGGGGGGTGGATGGGAGGGGTGGT
TGAAGTGCGTCGAAGCGCGTGGAGATGGGGAGGAAAAAGAGAAAGGAGGC
GTCGAAGAGAGAGGGGGGGGGGGGGGT

Coding sequence (CDS) from alignment at scaffold_4:919709..921585+

>mRNA_2154 ID=mRNA_2154|Name=jgi.p|Nanoce1779_2|579268|organism=Nannochloropsis oceanica|type=CDS|length=2478bp|location=Sequence derived from alignment at scaffold_4:919709..921585+ (Nannochloropsis oceanica)
ATGAGCAACGGGGACGGAAAGAAGCAGGTTTTAACGGATCCCTTCCGTGG
GTTTGGGACCATTGCCATCCACGCCGGGCAGGAGCCGGATCCTGGGACGG
GTGCAGTGGTCCCCGCTATTTCGCTCGCTACAACGTTTGCTCAAGCAAGC
CCAGGGACCAAGTACGGAACGGACCTGCCCAATAGCTTTGGGAAAGGCTT
CGAGTACAGCAGGACGGGAAACCCAACCCGAGGCGCATTTGAGCGGGCTA
TGGCCGCGGTGGAGCATGGTAAACACGCCTTGGCATTCGCCTCGGGTTTG
GCTGCGACTTCAGCCGTCGTTCATCTGCTCGAGACGGGGCAGCATGTAGT
AATTGTGGACGACGTCTATGGAGGGACACAACGTTACTTCCGTAAGATTG
CCAAGCCCACCTATAACATCGACTTCAGCTTTGTGGATTTCAACGATACC
ACCGCCCTGGAAGCAGCTTTTCGACCAAATCAGACCAAACTAATTTGGCT
CGAGACTCCTACCAATCCCACCCTCAAACTGTCCGATATTGCCGCCACTG
CCGCCATCGCCAAGAAGCACGGCGCCCTCTTCGTGGTGGACAACACCTTT
CTCTCACCCTACTTCCAGAACCCCCTCGACCTCGGCGCGGACATGGTCGT
GCACAGCGTCACTAAGTACATTGGCGGCCACTCCGATGTCGTTGGTGGAG
TCATTATCACCAACTCACCCGACTTGAACGAGAAACTGCGGTTTATACAA
AACTCAGTCGGGGCCGTGCCCTCCCCCTTCGATTGCTTCATGGCCCTCCG
CGGCCTCAAGACACTCCACGTCCGCCTCGAAGCTGCTGCACGCAATGCCC
TTGCGATTGCCACTTATTTGGGGCAACATTCTGGAGTGACCAAGGTTTTG
TTTCCTGGCCTTCCATCCCACCCTCAGTTTGAACTGGCGAAGAAGCAACA
GCATGGGCCCGGGGCGATGGTTACATTTTATGTTGGGGGGGAGGTGAGCA
ACGCCCGAAGATTCTTGGAGTCATTGCAGGTCTTTATACTGGCGGAGAGC
CTGGGAGCGGTTGAATCCTTGGCGGAGTCCCCGGCAATCATGACGCATGC
CTCAGTCCCACCTGAAGTGAGGAAGGCGTTGGGCATTGATGATACGTTGG
TGAGGCTATCGGTGGGGATTGAGAGCTTGCCTGATTTAATTGAAGACCTG
GACCAGGCCTTGAATAAGGCCGCGGCAGTGACGGCCTAGATGAGCAACGG
GGACGGAAAGAAGCAGGTTTTAACGGATCCCTTCCGTGGGTTTGGGACCA
TTGCCATCCACGCCGGGCAGGAGCCGGATCCTGGGACGGGTGCAGTGGTC
CCCGCTATTTCGCTCGCTACAACGTTTGCTCAAGCAAGCCCAGGGACCAA
GTACGGAACGGACCTGCCCAATAGCTTTGGGAAAGGCTTCGAGTACAGCA
GGACGGGAAACCCAACCCGAGGCGCATTTGAGCGGGCTATGGCCGCGGTG
GAGCATGGTAAACACGCCTTGGCATTCGCCTCGGGTTTGGCTGCGACTTC
AGCCGTCGTTCATCTGCTCGAGACGGGGCAGCATGTAGTAATTGTGGACG
ACGTCTATGGAGGGACACAACGTTACTTCCGTAAGATTGCCAAGCCCACC
TATAACATCGACTTCAGCTTTGTGGATTTCAACGATACCACCGCCCTGGA
AGCAGCTTTTCGACCAAATCAGACCAAACTAATTTGGCTCGAGACTCCTA
CCAATCCCACCCTCAAACTGTCCGATATTGCCGCCACTGCCGCCATCGCC
AAGAAGCACGGCGCCCTCTTCGTGGTGGACAACACCTTTCTCTCACCCTA
CTTCCAGAACCCCCTCGACCTCGGCGCGGACATGGTCGTGCACAGCGTCA
CTAAGTACATTGGCGGCCACTCCGATGTCGTTGGTGGAGTCATTATCACC
AACTCACCCGACTTGAACGAGAAACTGCGGTTTATACAAAACTCAGTCGG
GGCCGTGCCCTCCCCCTTCGATTGCTTCATGGCCCTCCGCGGCCTCAAGA
CACTCCACGTCCGCCTCGAAGCTGCTGCACGCAATGCCCTTGCGATTGCC
ACTTATTTGGGGCAACATTCTGGAGTGACCAAGGTTTTGTTTCCTGGCCT
TCCATCCCACCCTCAGTTTGAACTGGCGAAGAAGCAACAGCATGGGCCCG
GGGCGATGGTTACATTTTATGTTGGGGGGGAGGTGAGCAACGCCCGAAGA
TTCTTGGAGTCATTGCAGGTCTTTATACTGGCGGAGAGCCTGGGAGCGGT
TGAATCCTTGGCGGAGTCCCCGGCAATCATGACGCATGCCTCAGTCCCAC
CTGAAGTGAGGAAGGCGTTGGGCATTGATGATACGTTGGTGAGGCTATCG
GTGGGGATTGAGAGCTTGCCTGATTTAATTGAAGACCTGGACCAGGCCTT
GAATAAGGCCGCGGCAGTGACGGCCTAG

Synonyms

Publications