jgi.p|Nanoce1779_2|579263, mRNA_2152 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579263
Unique NamemRNA_2152
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length492
Alignment locationscaffold_4:915490..916651 +

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Properties
Property NameValue
TranscriptId579349
TrackFilteredModels2
ProteinId579263
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:915490..916651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579263gene_2152Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579263mRNA_2152-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2152CDS_2152Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2152 ID=mRNA_2152|Name=jgi.p|Nanoce1779_2|579263|organism=Nannochloropsis oceanica|type=mRNA|length=492bp
ACAGCTCAAGAGCAGCAGAAGAGTCTGCAGTCGCACCGGGAACATGAGCG
ACGACGAGGGCACGAAGAAAGGCGCCAAATCCTACGAAGACCGGTTAAAA
GCTGTCAGTATCATCTCCAAGCCTCTGGCCGGTAAGAAATTGACCAAGAA
ACTTTACAAGCTCGTAAAAAAAGCCTCGTCCGCCAAGAACGTTAAACGCG
GCGTCAAGGAAGTGGTAAAAGGACTCAAGAAGGGCGAGAAAGGCATCTGT
CTCATCGCGGGGGACATCTACCCGGTCGACGTCATAAGCCACCTGGCAGT
CTTGTGTGAGGAGAAAGACACCCCCTATATTTACGTACCGTCCAAGCATG
ACCTGGGCAGTGCAGCGGCAGTGAAGCGACCAACAAGTTGTGTGTTGGTG
AGCAATAAAGATGCAGGAAAGGAGGAGAAAGAAACGTATGCCAAGATGGT
GCTCGAGATAAAGGAGGCGTCGACTGCGTGAGCACAGGGAGG
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protein sequence of jgi.p|Nanoce1779_2|579263

>mRNA_2152-protein ID=mRNA_2152-protein|Name=jgi.p|Nanoce1779_2|579263|organism=Nannochloropsis oceanica|type=polypeptide|length=146bp
MSDDEGTKKGAKSYEDRLKAVSIISKPLAGKKLTKKLYKLVKKASSAKNV
KRGVKEVVKGLKKGEKGICLIAGDIYPVDVISHLAVLCEEKDTPYIYVPS
KHDLGSAAAVKRPTSCVLVSNKDAGKEEKETYAKMVLEIKEASTA*
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mRNA from alignment at scaffold_4:915490..916651+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2152 ID=mRNA_2152|Name=jgi.p|Nanoce1779_2|579263|organism=Nannochloropsis oceanica|type=mRNA|length=1162bp|location=Sequence derived from alignment at scaffold_4:915490..916651+ (Nannochloropsis oceanica)
ACAGCTCAAGAGCAGCAGAAGAGTCTGCAGTCGCACCGGGAACATGAGCG
ACGACGAGGGCACGAAGAAAGGGTACGTTTGTTCTTGCACAGCCTCCCCA
CCCATCCAAGTATACCCTGCCTTCTCGCAATGCATCCACCTTCTCTATGC
CCTGTCGTTGTGGGCTCTTGTTCGCCTCGCCTTTAGCATACCCTGTTTGA
GAGTCTGGCGCGGCGCAGCAAGAATTATAGGCTGTGAGCAGAGTTTGGCC
TGTGCTCACACCAACCCGCACTTGGTACTCCCTGCCTCGGCCTCTTAACT
CGGCCGCCGTGTGCCACGTTTTCCCCAAAATTCAGAGCCACTATAATGAC
AAGGCTTTGCGTTCCTCAGAGATCAGGATAAATCACTTGAGCACAAGCAT
GCTTTCGACAAAATGTCGCCCAGTCGTCGTCTCAAAGTACAACCTCTCCT
ATCAGCAACGCCCTTGACTCATTTCATTCACACAATCGCCCTTCTTGGAA
TGCAATCATGTCTTTGCATGAATAAATGGTGACCTATTCAAGGCCAATAT
CATTGGCACGCGAACTCTGTGAATCCCACTCCGCTTACCTTTCTTCCCCT
ATCCACTCCCCAAAACAAAGCAGAGCCATGACCCACGAAGACATAGTGCT
GATAACGTTTCCCCTCCTAACTCTCCCTTCCCGCGCTCACCATCTCTCAC
ATAAGCCACCATCCATCCCTCATCCCTCCACCTAACCAACAGCGCCAAAT
CCTACGAAGACCGGTTAAAAGCTGTCAGTATCATCTCCAAGCCTCTGGCC
GGTAAGAAATTGACCAAGAAACTTTACAAGCTCGTAAAAAAAGCCTCGTC
CGCCAAGAACGTTAAACGCGGCGTCAAGGAAGTGGTAAAAGGACTCAAGA
AGGGCGAGAAAGGCATCTGTCTCATCGCGGGGGACATCTACCCGGTCGAC
GTCATAAGCCACCTGGCAGTCTTGTGTGAGGAGAAAGACACCCCCTATAT
TTACGTACCGTCCAAGCATGACCTGGGCAGTGCAGCGGCAGTGAAGCGAC
CAACAAGTTGTGTGTTGGTGAGCAATAAAGATGCAGGAAAGGAGGAGAAA
GAAACGTATGCCAAGATGGTGCTCGAGATAAAGGAGGCGTCGACTGCGTG
AGCACAGGGAGG
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Coding sequence (CDS) from alignment at scaffold_4:915490..916651+

>mRNA_2152 ID=mRNA_2152|Name=jgi.p|Nanoce1779_2|579263|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_4:915490..916651+ (Nannochloropsis oceanica)
ATGAGCGACGACGAGGGCACGAAGAAAGGCGCCAAATCCTACGAAGACCG
GTTAAAAGCTGTCAGTATCATCTCCAAGCCTCTGGCCGGTAAGAAATTGA
CCAAGAAACTTTACAAGCTCGTAAAAAAAGCCTCGTCCGCCAAGAACGTT
AAACGCGGCGTCAAGGAAGTGGTAAAAGGACTCAAGAAGGGCGAGAAAGG
CATCTGTCTCATCGCGGGGGACATCTACCCGGTCGACGTCATAAGCCACC
TGGCAGTCTTGTGTGAGGAGAAAGACACCCCCTATATTTACGTACCGTCC
AAGCATGACCTGGGCAGTGCAGCGGCAGTGAAGCGACCAACAAGTTGTGT
GTTGGTGAGCAATAAAGATGCAGGAAAGGAGGAGAAAGAAACGTATGCCA
AGATGGTGCTCGAGATAAAGGAGGCGTCGACTGCGTGAATGAGCGACGAC
GAGGGCACGAAGAAAGGCGCCAAATCCTACGAAGACCGGTTAAAAGCTGT
CAGTATCATCTCCAAGCCTCTGGCCGGTAAGAAATTGACCAAGAAACTTT
ACAAGCTCGTAAAAAAAGCCTCGTCCGCCAAGAACGTTAAACGCGGCGTC
AAGGAAGTGGTAAAAGGACTCAAGAAGGGCGAGAAAGGCATCTGTCTCAT
CGCGGGGGACATCTACCCGGTCGACGTCATAAGCCACCTGGCAGTCTTGT
GTGAGGAGAAAGACACCCCCTATATTTACGTACCGTCCAAGCATGACCTG
GGCAGTGCAGCGGCAGTGAAGCGACCAACAAGTTGTGTGTTGGTGAGCAA
TAAAGATGCAGGAAAGGAGGAGAAAGAAACGTATGCCAAGATGGTGCTCG
AGATAAAGGAGGCGTCGACTGCGTGA
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Synonyms
Publications