jgi.p|Nanoce1779_2|579259, mRNA_2151 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579259
Unique NamemRNA_2151
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2351
Alignment locationscaffold_4:912112..914636 -

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Properties
Property NameValue
TranscriptId579345
TrackFilteredModels2
ProteinId579259
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:912112..914636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579259gene_2151Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579259mRNA_2151-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2151CDS_2151Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2151 ID=mRNA_2151|Name=jgi.p|Nanoce1779_2|579259|organism=Nannochloropsis oceanica|type=mRNA|length=2351bp
AACAGAAAACATTACATAAATGTTTGGGCATCCTGGCCATATGCTCGCGT
TCGACCAAGGTGGGATGAATGCTGACATGGCCCATCATCTGATGCTTAAT
CCCCACCATCCGCACCACCACTCGCACATGTTGATGGATATCAGTGAGAC
CGACCGTGAGTACCGCATCGAGGTTGACCTCCCCGGGAACAAGAAAGACG
ACATCGATATCAGCGTGGACGACGACGTGCTGACCATTCAAACAGAGCGT
CGGGAGGAGTCCAGCGAGGACCAACTTAACTATCATGTGAAAGAACGACG
GGTGGGCAAGAGTAAACGCTCCATTCGTCTGCCCAAGAGCGCTGATACTG
ATTCGATTCGAGCGCAGTACATGGATGGGGTATTGCGAATCTGTGTGGAC
AAGAAGACGGAGAAGTCCCAGAGCAAAAGCGTTATAATTACTGACCATTC
TTATCCTTTTGCGAAATGAGAAGGCCGCCCACCCCCGGAGGGGGCGGAGG
TGAGGAGCCGGAGATGGAGGAAGAAGGGTAGGACAAGTCGGCTACATCGG
GAAAGCGGAAGAGAGAGCGGAGTAAAGCGAGGTGGGGGTTAAGAAGACGT
TGAGGTTTGAGACAGATGAAGAAAATGTGGTAGATAGAGAGCAAAGACGT
GAATGAGAGGCAACTTCCTGAGCAGCCCAATTAGTTGCTACACTCGCAAG
GAGTAGGGGAATATGTGTAGAGACAAAGGGATAGAGATGCAGTGGGTGGA
GATTAAAGGGAATAGGACCCCGAAGAGAATAGCAAATGATGCGAGTGTCC
CCTGCTTAGGATCGAATGTCAAAGAGGTATTGGCGTGAGGAGGGAGGGGA
AACACCAAGTCTTAGAGGAGCGAGCTGCGCTGGCAGTCACATCAGGATAG
ACGAAGTCATGGGACTCAATAAGAACAAAAGCGGCGGACGACTGTCCCTG
ACAACCAACTGTTACACTCATACATGTAAAAGTGTGACTGCTTTTGCGCT
TTTGCTTTTGCGTTACTTTTTTTAGGCCCAAGTTTCTTTAAAAAAACACG
CACATGGGCCAGCGAGCCTGTCCTCCGCGACCTTGCTTGTCCCCTTGCGC
TATTCCCTCGCCACCATGAACTAAGTCCGCCGCAACGATTGGCAACCAAA
CAGCACCACTCCCGCTATAGCATCATGGCTCCTGCCTTCAGCTTCGCCAT
CGACCGTGGGGGCACGTTCACCGACGTCTTTTGCGTCCTGCCTGGTAAGT
CTTTCCCGGGTAGGGCAACCTCCCCTTCCGCCCCCGACCTCTCATACACA
ATCACAAACCCGTACAGAAGGAAAGGGCCACCGTGTTTTGAAGTTGTTGA
GTGAAGACCCTGCCAACTACCCAGATGCGCCGCGAGAGGTGAGGAAAGAA
AAGGGACGACGGACCGAAGGAGGGGAAGGCAGACAGTCTTATCTCAATAA
GCCAGAGACCTCATAATACATACTTTCTCTTTGAAACCCAGGGTATCCGT
CGTATTCTGGAGAAAGAAACAGGCGTGCCGCATCCACGCGACCAACCTCT
CGACACTTCGCGTATCGCCTCAATCAAGATGGGCACCACCGTCGCCACCA
ACGCCCTCCTCGAACGGAAAGGAGAACGCTTCGCTTTGGCTATCACAAGT
GGATTTCGCGATCTGCTCCATATTGGCAATCAGTCCCGGCCCAACATATT
TGACCTCAAAGTGCGTAAACCCGAAGTCCTTTACGAAACCGTCGTTGAGA
TCGAGGAGCGTGTTGTGCTAGTGCCCGAGAGTCAGCCGTCCCATCCCGAC
GATTTGCTGGGCGTGACAGGGGAGCGGATACGCATTGAAAAGGCCGTGGA
TGAAGCGATGGCCCGGAAACAGCTGCAGGCACTGTATGATGCAGGTTTCA
CCAGCGTGGCTGTTGTTTTGTTGCATGCCTACACTTTTACTGCTCATGAG
GTGCTGTTGGGGAGGCTGGCCAAGGAGATTGGTTTCAGGCAAGTCTCGCT
CTCATCGCAGGTGATGCCGATGGTAAAGATGGTACCGAGAGGATTAACTA
CTTGTATTGATGCCTATCTTACCCCGGTCATCGATGCGTACTTGCAGTCG
TTCAAGTCAGGGTTTGACAGGGGCTTAGAAGGGAACGTCAAGGTGGCATT
TATGCAGAGTGATGGAGGTTTGGCGCCCATGAATGCGTTTTCGGGCCATC
GGGCTATTTTGTCAGGGCCAGCAGGAGGGGTGGTGGGGTATGCAGCAACG
GTTTTTCAGAAGGATGGAGAGGGGGAGGGAGGGAGGGAAGGACAGCCTTC
GATTGGGTTTGATATGGGCGGGACTTCAACGGATGTGTCGAGGTATGACG
G
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protein sequence of jgi.p|Nanoce1779_2|579259

>mRNA_2151-protein ID=mRNA_2151-protein|Name=jgi.p|Nanoce1779_2|579259|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MFGHPGHMLAFDQGGMNADMAHHLMLNPHHPHHHSHMLMDISETDREYRI
EVDLPGNKKDDIDISVDDDVLTIQTERREESSEDQLNYHVKERRVGKSKR
SIRLPKSADTDSIRAQYMDGVLRICVDKKTEKSQSKSVIITDHSYPFAK*
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mRNA from alignment at scaffold_4:912112..914636-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2151 ID=mRNA_2151|Name=jgi.p|Nanoce1779_2|579259|organism=Nannochloropsis oceanica|type=mRNA|length=2525bp|location=Sequence derived from alignment at scaffold_4:912112..914636- (Nannochloropsis oceanica)
AACAGAAAACATTACATAAATGTTTGGGCATCCTGGCCATATGCTCGCGT
TCGACCAAGGTGGGATGAATGCTGACATGGCCCATCATCTGATGCTTAAT
CCCCACCATCCGCACCACCACTCGCACATGTTGATGGATATCAGGTACGA
GGATTGAGGGAGAAAATTGTGGAAGAAGAAAATCGGAGGATTAAAGAAGA
GTGAAGTGTTTTATGTACATGTATTCTTGGCAGCGCTTTATAAGGACTTC
TTTCTTCTCACACTCCCTCTCATCCTCCTCCTCCCTCCTTCTCTCCCAAC
CTTTTGCTCACGACACAGTGAGACCGACCGTGAGTACCGCATCGAGGTTG
ACCTCCCCGGGAACAAGAAAGACGACATCGATATCAGCGTGGACGACGAC
GTGCTGACCATTCAAACAGAGCGTCGGGAGGAGTCCAGCGAGGACCAACT
TAACTATCATGTGAAAGAACGACGGGTGGGCAAGAGTAAACGCTCCATTC
GTCTGCCCAAGAGCGCTGATACTGATTCGATTCGAGCGCAGTACATGGAT
GGGGTATTGCGAATCTGTGTGGACAAGAAGACGGAGAAGTCCCAGAGCAA
AAGCGTTATAATTACTGACCATTCTTATCCTTTTGCGAAATGAGAAGGCC
GCCCACCCCCGGAGGGGGCGGAGGTGAGGAGCCGGAGATGGAGGAAGAAG
GGTAGGACAAGTCGGCTACATCGGGAAAGCGGAAGAGAGAGCGGAGTAAA
GCGAGGTGGGGGTTAAGAAGACGTTGAGGTTTGAGACAGATGAAGAAAAT
GTGGTAGATAGAGAGCAAAGACGTGAATGAGAGGCAACTTCCTGAGCAGC
CCAATTAGTTGCTACACTCGCAAGGAGTAGGGGAATATGTGTAGAGACAA
AGGGATAGAGATGCAGTGGGTGGAGATTAAAGGGAATAGGACCCCGAAGA
GAATAGCAAATGATGCGAGTGTCCCCTGCTTAGGATCGAATGTCAAAGAG
GTATTGGCGTGAGGAGGGAGGGGAAACACCAAGTCTTAGAGGAGCGAGCT
GCGCTGGCAGTCACATCAGGATAGACGAAGTCATGGGACTCAATAAGAAC
AAAAGCGGCGGACGACTGTCCCTGACAACCAACTGTTACACTCATACATG
TAAAAGTGTGACTGCTTTTGCGCTTTTGCTTTTGCGTTACTTTTTTTAGG
CCCAAGTTTCTTTAAAAAAACACGCACATGGGCCAGCGAGCCTGTCCTCC
GCGACCTTGCTTGTCCCCTTGCGCTATTCCCTCGCCACCATGAACTAAGT
CCGCCGCAACGATTGGCAACCAAACAGCACCACTCCCGCTATAGCATCAT
GGCTCCTGCCTTCAGCTTCGCCATCGACCGTGGGGGCACGTTCACCGACG
TCTTTTGCGTCCTGCCTGGTAAGTCTTTCCCGGGTAGGGCAACCTCCCCT
TCCGCCCCCGACCTCTCATACACAATCACAAACCCGTACAGAAGGAAAGG
GCCACCGTGTTTTGAAGTTGTTGAGTGAAGACCCTGCCAACTACCCAGAT
GCGCCGCGAGAGGTGAGGAAAGAAAAGGGACGACGGACCGAAGGAGGGGA
AGGCAGACAGTCTTATCTCAATAAGCCAGAGACCTCATAATACATACTTT
CTCTTTGAAACCCAGGGTATCCGTCGTATTCTGGAGAAAGAAACAGGCGT
GCCGCATCCACGCGACCAACCTCTCGACACTTCGCGTATCGCCTCAATCA
AGATGGGCACCACCGTCGCCACCAACGCCCTCCTCGAACGGAAAGGAGAA
CGCTTCGCTTTGGCTATCACAAGTGGATTTCGCGATCTGCTCCATATTGG
CAATCAGTCCCGGCCCAACATATTTGACCTCAAAGTGCGTAAACCCGAAG
TCCTTTACGAAACCGTCGTTGAGATCGAGGAGCGTGTTGTGCTAGTGCCC
GAGAGTCAGCCGTCCCATCCCGACGATTTGCTGGGCGTGACAGGGGAGCG
GATACGCATTGAAAAGGCCGTGGATGAAGCGATGGCCCGGAAACAGCTGC
AGGCACTGTATGATGCAGGTTTCACCAGCGTGGCTGTTGTTTTGTTGCAT
GCCTACACTTTTACTGCTCATGAGGTGCTGTTGGGGAGGCTGGCCAAGGA
GATTGGTTTCAGGCAAGTCTCGCTCTCATCGCAGGTGATGCCGATGGTAA
AGATGGTACCGAGAGGATTAACTACTTGTATTGATGCCTATCTTACCCCG
GTCATCGATGCGTACTTGCAGTCGTTCAAGTCAGGGTTTGACAGGGGCTT
AGAAGGGAACGTCAAGGTGGCATTTATGCAGAGTGATGGAGGTTTGGCGC
CCATGAATGCGTTTTCGGGCCATCGGGCTATTTTGTCAGGGCCAGCAGGA
GGGGTGGTGGGGTATGCAGCAACGGTTTTTCAGAAGGATGGAGAGGGGGA
GGGAGGGAGGGAAGGACAGCCTTCGATTGGGTTTGATATGGGCGGGACTT
CAACGGATGTGTCGAGGTATGACGG
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Coding sequence (CDS) from alignment at scaffold_4:912112..914636-

>mRNA_2151 ID=mRNA_2151|Name=jgi.p|Nanoce1779_2|579259|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_4:912112..914636- (Nannochloropsis oceanica)
TGAGACCGACCGTGAGTACCGCATCGAGGTTGACCTCCCCGGGAACAAGA
AAGACGACATCGATATCAGCGTGGACGACGACGTGCTGACCATTCAAACA
GAGCGTCGGGAGGAGTCCAGCGAGGACCAACTTAACTATCATGTGAAAGA
ACGACGGGTGGGCAAGAGTAAACGCTCCATTCGTCTGCCCAAGAGCGCTG
ATACTGATTCGATTCGAGCGCAGTACATGGATGGGGTATTGCGAATCTGT
GTGGACAAGAAGACGGAGAAGTCCCAGAGCAAAAGCGTTATAATTACTGA
CCATTCTTATCCTTTTGCGAAATGAATGTTTGGGCATCCTGGCCATATGC
TCGCGTTCGACCAAGGTGGGATGAATGCTGACATGGCCCATCATCTGATG
CTTAATCCCCACCATCCGCACCACCACTCGCACATGTTGATGGATATCAG
TGAGACCGACCGTGAGTACCGCATCGAGGTTGACCTCCCCGGGAACAAGA
AAGACGACATCGATATCAGCGTGGACGACGACGTGCTGACCATTCAAACA
GAGCGTCGGGAGGAGTCCAGCGAGGACCAACTTAACTATCATGTGAAAGA
ACGACGGGTGGGCAAGAGTAAACGCTCCATTCGTCTGCCCAAGAGCGCTG
ATACTGATTCGATTCGAGCGCAGTACATGGATGGGGTATTGCGAATCTGT
GTGGACAAGAAGACGGAGAAGTCCCAGAGCAAAAGCGTTATAATTACTGA
CCATTCTTATCCTTTTGCGAAATGAATGTTTGGGCATCCTGGCCATATGC
TCGCGTTCGACCAAGGTGGGATGAATGCTGACATGGCCCATCATCTGATG
CTTAATCCCCACCATCCGCACCACCACTCGCACATGTTGATGGATATCAG
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Synonyms
Publications