jgi.p|Nanoce1779_2|579254, mRNA_2149 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579254
Unique Name	mRNA_2149
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2729
Alignment location	scaffold_4:905458..908186 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579340
Track	FilteredModels2
ProteinId	579254

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:905458..908186 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579254	gene_2149	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579254	mRNA_2149-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2149	CDS_2149	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:905458..908186-
coding sequence from alignment at scaffold_4:905458..908186-

mRNA sequence

>mRNA_2149 ID=mRNA_2149|Name=jgi.p|Nanoce1779_2|579254|organism=Nannochloropsis oceanica|type=mRNA|length=2729bp
ACAGGCAATAGCCACTCGTGCTCCTTGTCAGCGCGGCGTGTAAGCTATCA
GCTCCTTGCATCCTTCCAAAAAGCAGACACAGCTACCACCTAGGTAGCAG
GAAAAGCAAGCCTTGCAAGAAGCAAAGAAGCCAAAACCACGGAAACTATG
TCCCGCACGTCAATCACCAGCCAATTGGCGCTCCTTCTCGTTTTTTGGGG
CCTCTCTTCGACCCAAGCCTTTGTCAGCCCTGCCATTTGGTCCCGGATTC
ACAGCAGTCTGCGCCTCTTTGGCCGCAACCCTGTAGTAGCAGAACAACAG
CTTGCCGCCACCAGGAGTAGTGCCTCTACACCGTTTTGGCGGGCGCTGAC
GTTTGGAGAGCGCATGACAGCACTTCGGGCAACAGCACCGATGAGCTTTG
GGGATTTCGGGGGTTCACATGGGAGCGAAGAGCTGACCTTCGCAGAGATG
CGAGAGCAACTGGGCACGCTCGAGTCGCAGTTAGCGGGGGCGATGGAGTT
GGGACGGTACGAGGAGGCTAAGGAATTGGTTAATGAGATCACCACCATGA
AGAACTTTTTGGAGAAGCAGATTAATGGTGGGGAGAACGGCGGTGGCATG
TTGAACACGAAGGCGCCCCCCCCTGCATCCCGCAACCCTTTCTTCGACGC
CTTCGGCTTGGGCGGGGCCTCTCCCGCGGCTGCAGCCATGATGGCTCCTG
TCCAGCCCCCTGCCTTTGCACCGCAGCCTCGCCGTAGCAATCGACCTGGC
TTGGGTGCTTTTGGAAGCGCTGTTGGCAACCGTCGCCGACCTGCACCCAG
CACGGGCAAGAGCTCGGGGGGGCTGGTAAACCGTGAGGGGTGGGCAGGGA
AGGGAAAAAGCGGGGATTTACCAATGGAAGCTGTTAGGAAGCGTCATTCT
GACATCACCGCCTACGGCATCCGCGTCGAGGTGTTTTGTTTTTTCCAACC
AGGGGCAAGCAAGCCCCAGGACAACCTGTACCAGTTTCAGTGCAACATCC
GCATTACCAACACCAACCCGGGGGACGTGCAGCTTCTTTCTCGCGAACTC
AAGATCTTTAAGGCTGACGGCTCGCCTCCTGAGTACGGGCCTGCGTCGCA
GCAGTTGGAGAGTCAGCCGACGGTGGGTCCAGGATCAGTTTATATGTACA
TGAGCGAGTTTGGGATTACGTGTGTGCCGGAGGATAAGAAGTATTTGGGG
CGGATCGAGGGTCATTTTAATGTACTGGTCAAAGAGGAGAATGCAGTGGT
TAAGGTGCCGATTGCCCCGTTCTGGCTGGAGTTGCCCGGAGATACGTTGG
TGTTGGCTTAAGCAGCACCAGGACCATGAGAGAGGGGAGCGGGACATGAC
AAAAGAGAATGACTTGTGGGACGTTAATCTCATAACGATTGGATCAACAG
AGATCGATTGGAGCAATGAGAAAGACCGCTCCCTTTTTTCCTTACAATTT
GGCAAGGTGTGACGAAAAACGCTATGTGGTAATTTATATGAGAGCGATAC
GTACGATGGTGATGGCGGGTTCGAAAATCGAAATAGATCGCGGCAAGAGG
GGCCTGGTGATGTAGCAGTGACACAGTGCGTGCTTGCTCCATCCACTTCT
CTTGTCTGCGGAGCAGCAACAGCCAACCTGACCAAAGAAAGGGACTTACT
GGTCTATGGGTTCGGGGAAAGACGACGAAGGCGAAGGTGGAAATGATATA
GTAGAGAAAAAGCAAACGGCGCGCAACGAGTGATCACATTGTCGTGAGTA
AATGTCAATGGCAAGGCGAGTAAGAGGAGGATTAGTAGAGAATGAGAGGT
TCACATATTTTTTTCGTACATTTTGTGTTGATTGTTTTTGGATTTCCTCT
GGAAGTCAATTTATGGTGTCGAGATGGAAAGCCAGCGTTCGAGCGGGATA
GTGCGAATTATGAATGAGAGGAGAATGATGGAAACGAGAGTTACCGACAG
GAAACAAGAAGCGAGGAGGGTTTTGCGTGTTATACCCCTCCTCGATAAGC
AAGACACTGGGGAGAGAATGATGAGTACTTGACTGTGTTAGACGTGTGTC
GACGATAAGAACAAGAAGGAGAGAGGCATTGCAAAGCCAAAGAAGGGATA
AAAAAGAGAGACGGTTAATCAACAACCCCATGTACCAACCCACAAGCAGC
CGTTAAATGGAAGACAGACAAGCGAGAGAGCACTAGTGTTGGCACACGGT
TGATTTCGAATTCGATGGAACGAAGAAGGCAGAAAATGGTGTACGGGGGG
TTTATTGGTCGTTTTTCATCTTGATAGTGCACGAGTAGCAGGTTGGAGAA
ACGAATCTGTCTGAAACGTCTAAAGTATTGGGCACTCTTCTTTTGGTTCA
TGGTATGAGATGTAATTGAGTGTGATGTCTATGTGTTGTCCGTGTGATTT
TTGTGTGCCTTTTTCATCCGAGGTTCGCAAGGCGGGTAGAGAAAGGGAAT
GTGTAGTTCTAGCATCCCGAGTGTATGTGTGTGATGGTCATTTTCTTCCT
TATGTTGCCACCATTTCTTTCCCTCCCGTCGCTCGTGTTATGTGGTGGGG
AAAACCGTACTTTTAGCGGATTGAAAACAACTGCTGCAGCAGCAGCAGCA
GCCGCAGCAGCAGCCTGTTGTGCCATGGAGGCAAAATAAAGAAAGAGATA
GAGACAGATAGAGAGGCCGGGTACTGATGTTAAACAATGTTATCAGGAAA
AAGGCAAAAAAAAATGCAAACAACGACAG

protein sequence of jgi.p|Nanoce1779_2|579254

>mRNA_2149-protein ID=mRNA_2149-protein|Name=jgi.p|Nanoce1779_2|579254|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MSRTSITSQLALLLVFWGLSSTQAFVSPAIWSRIHSSLRLFGRNPVVAEQ
QLAATRSSASTPFWRALTFGERMTALRATAPMSFGDFGGSHGSEELTFAE
MREQLGTLESQLAGAMELGRYEEAKELVNEITTMKNFLEKQINGGENGGG
MLNTKAPPPASRNPFFDAFGLGGASPAAAAMMAPVQPPAFAPQPRRSNRP
GLGAFGSAVGNRRRPAPSTGKSSGGLVNREGWAGKGKSGDLPMEAVRKRH
SDITAYGIRVEVFCFFQPGASKPQDNLYQFQCNIRITNTNPGDVQLLSRE
LKIFKADGSPPEYGPASQQLESQPTVGPGSVYMYMSEFGITCVPEDKKYL
GRIEGHFNVLVKEENAVVKVPIAPFWLELPGDTLVLA*

mRNA from alignment at scaffold_4:905458..908186-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2149 ID=mRNA_2149|Name=jgi.p|Nanoce1779_2|579254|organism=Nannochloropsis oceanica|type=mRNA|length=2729bp|location=Sequence derived from alignment at scaffold_4:905458..908186- (Nannochloropsis oceanica)
ACAGGCAATAGCCACTCGTGCTCCTTGTCAGCGCGGCGTGTAAGCTATCA
GCTCCTTGCATCCTTCCAAAAAGCAGACACAGCTACCACCTAGGTAGCAG
GAAAAGCAAGCCTTGCAAGAAGCAAAGAAGCCAAAACCACGGAAACTATG
TCCCGCACGTCAATCACCAGCCAATTGGCGCTCCTTCTCGTTTTTTGGGG
CCTCTCTTCGACCCAAGCCTTTGTCAGCCCTGCCATTTGGTCCCGGATTC
ACAGCAGTCTGCGCCTCTTTGGCCGCAACCCTGTAGTAGCAGAACAACAG
CTTGCCGCCACCAGGAGTAGTGCCTCTACACCGTTTTGGCGGGCGCTGAC
GTTTGGAGAGCGCATGACAGCACTTCGGGCAACAGCACCGATGAGCTTTG
GGGATTTCGGGGGTTCACATGGGAGCGAAGAGCTGACCTTCGCAGAGATG
CGAGAGCAACTGGGCACGCTCGAGTCGCAGTTAGCGGGGGCGATGGAGTT
GGGACGGTACGAGGAGGCTAAGGAATTGGTTAATGAGATCACCACCATGA
AGAACTTTTTGGAGAAGCAGATTAATGGTGGGGAGAACGGCGGTGGCATG
TTGAACACGAAGGCGCCCCCCCCTGCATCCCGCAACCCTTTCTTCGACGC
CTTCGGCTTGGGCGGGGCCTCTCCCGCGGCTGCAGCCATGATGGCTCCTG
TCCAGCCCCCTGCCTTTGCACCGCAGCCTCGCCGTAGCAATCGACCTGGC
TTGGGTGCTTTTGGAAGCGCTGTTGGCAACCGTCGCCGACCTGCACCCAG
CACGGGCAAGAGCTCGGGGGGGCTGGTAAACCGTGAGGGGTGGGCAGGGA
AGGGAAAAAGCGGGGATTTACCAATGGAAGCTGTTAGGAAGCGTCATTCT
GACATCACCGCCTACGGCATCCGCGTCGAGGTGTTTTGTTTTTTCCAACC
AGGGGCAAGCAAGCCCCAGGACAACCTGTACCAGTTTCAGTGCAACATCC
GCATTACCAACACCAACCCGGGGGACGTGCAGCTTCTTTCTCGCGAACTC
AAGATCTTTAAGGCTGACGGCTCGCCTCCTGAGTACGGGCCTGCGTCGCA
GCAGTTGGAGAGTCAGCCGACGGTGGGTCCAGGATCAGTTTATATGTACA
TGAGCGAGTTTGGGATTACGTGTGTGCCGGAGGATAAGAAGTATTTGGGG
CGGATCGAGGGTCATTTTAATGTACTGGTCAAAGAGGAGAATGCAGTGGT
TAAGGTGCCGATTGCCCCGTTCTGGCTGGAGTTGCCCGGAGATACGTTGG
TGTTGGCTTAAGCAGCACCAGGACCATGAGAGAGGGGAGCGGGACATGAC
AAAAGAGAATGACTTGTGGGACGTTAATCTCATAACGATTGGATCAACAG
AGATCGATTGGAGCAATGAGAAAGACCGCTCCCTTTTTTCCTTACAATTT
GGCAAGGTGTGACGAAAAACGCTATGTGGTAATTTATATGAGAGCGATAC
GTACGATGGTGATGGCGGGTTCGAAAATCGAAATAGATCGCGGCAAGAGG
GGCCTGGTGATGTAGCAGTGACACAGTGCGTGCTTGCTCCATCCACTTCT
CTTGTCTGCGGAGCAGCAACAGCCAACCTGACCAAAGAAAGGGACTTACT
GGTCTATGGGTTCGGGGAAAGACGACGAAGGCGAAGGTGGAAATGATATA
GTAGAGAAAAAGCAAACGGCGCGCAACGAGTGATCACATTGTCGTGAGTA
AATGTCAATGGCAAGGCGAGTAAGAGGAGGATTAGTAGAGAATGAGAGGT
TCACATATTTTTTTCGTACATTTTGTGTTGATTGTTTTTGGATTTCCTCT
GGAAGTCAATTTATGGTGTCGAGATGGAAAGCCAGCGTTCGAGCGGGATA
GTGCGAATTATGAATGAGAGGAGAATGATGGAAACGAGAGTTACCGACAG
GAAACAAGAAGCGAGGAGGGTTTTGCGTGTTATACCCCTCCTCGATAAGC
AAGACACTGGGGAGAGAATGATGAGTACTTGACTGTGTTAGACGTGTGTC
GACGATAAGAACAAGAAGGAGAGAGGCATTGCAAAGCCAAAGAAGGGATA
AAAAAGAGAGACGGTTAATCAACAACCCCATGTACCAACCCACAAGCAGC
CGTTAAATGGAAGACAGACAAGCGAGAGAGCACTAGTGTTGGCACACGGT
TGATTTCGAATTCGATGGAACGAAGAAGGCAGAAAATGGTGTACGGGGGG
TTTATTGGTCGTTTTTCATCTTGATAGTGCACGAGTAGCAGGTTGGAGAA
ACGAATCTGTCTGAAACGTCTAAAGTATTGGGCACTCTTCTTTTGGTTCA
TGGTATGAGATGTAATTGAGTGTGATGTCTATGTGTTGTCCGTGTGATTT
TTGTGTGCCTTTTTCATCCGAGGTTCGCAAGGCGGGTAGAGAAAGGGAAT
GTGTAGTTCTAGCATCCCGAGTGTATGTGTGTGATGGTCATTTTCTTCCT
TATGTTGCCACCATTTCTTTCCCTCCCGTCGCTCGTGTTATGTGGTGGGG
AAAACCGTACTTTTAGCGGATTGAAAACAACTGCTGCAGCAGCAGCAGCA
GCCGCAGCAGCAGCCTGTTGTGCCATGGAGGCAAAATAAAGAAAGAGATA
GAGACAGATAGAGAGGCCGGGTACTGATGTTAAACAATGTTATCAGGAAA
AAGGCAAAAAAAAATGCAAACAACGACAG

Coding sequence (CDS) from alignment at scaffold_4:905458..908186-

>mRNA_2149 ID=mRNA_2149|Name=jgi.p|Nanoce1779_2|579254|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at scaffold_4:905458..908186- (Nannochloropsis oceanica)
ATGTCCCGCACGTCAATCACCAGCCAATTGGCGCTCCTTCTCGTTTTTTG
GGGCCTCTCTTCGACCCAAGCCTTTGTCAGCCCTGCCATTTGGTCCCGGA
TTCACAGCAGTCTGCGCCTCTTTGGCCGCAACCCTGTAGTAGCAGAACAA
CAGCTTGCCGCCACCAGGAGTAGTGCCTCTACACCGTTTTGGCGGGCGCT
GACGTTTGGAGAGCGCATGACAGCACTTCGGGCAACAGCACCGATGAGCT
TTGGGGATTTCGGGGGTTCACATGGGAGCGAAGAGCTGACCTTCGCAGAG
ATGCGAGAGCAACTGGGCACGCTCGAGTCGCAGTTAGCGGGGGCGATGGA
GTTGGGACGGTACGAGGAGGCTAAGGAATTGGTTAATGAGATCACCACCA
TGAAGAACTTTTTGGAGAAGCAGATTAATGGTGGGGAGAACGGCGGTGGC
ATGTTGAACACGAAGGCGCCCCCCCCTGCATCCCGCAACCCTTTCTTCGA
CGCCTTCGGCTTGGGCGGGGCCTCTCCCGCGGCTGCAGCCATGATGGCTC
CTGTCCAGCCCCCTGCCTTTGCACCGCAGCCTCGCCGTAGCAATCGACCT
GGCTTGGGTGCTTTTGGAAGCGCTGTTGGCAACCGTCGCCGACCTGCACC
CAGCACGGGCAAGAGCTCGGGGGGGCTGGTAAACCGTGAGGGGTGGGCAG
GGAAGGGAAAAAGCGGGGATTTACCAATGGAAGCTGTTAGGAAGCGTCAT
TCTGACATCACCGCCTACGGCATCCGCGTCGAGGTGTTTTGTTTTTTCCA
ACCAGGGGCAAGCAAGCCCCAGGACAACCTGTACCAGTTTCAGTGCAACA
TCCGCATTACCAACACCAACCCGGGGGACGTGCAGCTTCTTTCTCGCGAA
CTCAAGATCTTTAAGGCTGACGGCTCGCCTCCTGAGTACGGGCCTGCGTC
GCAGCAGTTGGAGAGTCAGCCGACGGTGGGTCCAGGATCAGTTTATATGT
ACATGAGCGAGTTTGGGATTACGTGTGTGCCGGAGGATAAGAAGTATTTG
GGGCGGATCGAGGGTCATTTTAATGTACTGGTCAAAGAGGAGAATGCAGT
GGTTAAGGTGCCGATTGCCCCGTTCTGGCTGGAGTTGCCCGGAGATACGT
TGGTGTTGGCTTAA

Synonyms

Publications