jgi.p|Nanoce1779_2|579253, mRNA_2148 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579253
Unique Name	mRNA_2148
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1705
Alignment location	scaffold_4:903740..905444 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579339
Track	FilteredModels2
ProteinId	579253

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:903740..905444 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579253	gene_2148	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579253	mRNA_2148-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2148	CDS_2148	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:903740..905444+
coding sequence from alignment at scaffold_4:903740..905444+

mRNA sequence

>mRNA_2148 ID=mRNA_2148|Name=jgi.p|Nanoce1779_2|579253|organism=Nannochloropsis oceanica|type=mRNA|length=1705bp
AGCACAGGAAAGAGCTGAAGGTCTCCCGCAATCCGTCGACGTCTCTACTA
TCCTACTTTCCCCTCCCCTACCCCCCCCATCACGTCATAACTCGAATATC
CGCCCCCTAGACGCCCCTGGAAAATGCCCTTGCTGACGTCGGCGGCCACC
GCCACCACCAGAGCAATAGTACGACGCGCAGGAAGACGGAGATGTGGTTG
TCAACGATCCAACTTGTCCAGCGTGCGCGTGGCCGATATCCCCGCACCCG
AGTCACCAACATCAGCAGCAGCAGCAGAGCCTCAATCCATCCCCCCCAAA
TCCAAGCCCTTCTCCACCGCGTCATCTCCACGCCTCCAAGAGCTCCGCGC
AAGAATACGAAATGAGGGATCTTCGCTTCAAATGTTTTTCCAGCCGTCAC
CGCCTCTACAACCACCAACACCTCTCCACCTCTCGTCGCAGCCGGCCGTC
CTGCTTGACGAGGACGAAGACGAAGGTCCCGCGTCCACCCTCGGCCCGCT
CGCCTCCGTTGAACGAGCCCCATTGACCGATTCTTTTGGAAGACAGCATA
CCTACCTCCGCATCTCCCTCACCGAGCGCTGCAATCTCCGCTGCACGTAC
TGCATGCCTGAGGAAGGCGTCCAACTCCAAGCCCAAGACCGCCTCCTGAG
CACCGACGAAGTCCTGCGAATTGCCGAGATATTCGTGCGTATGGGAGTAA
CCAAGATCAGACTTACAGGAGGCGAGCCATTAGTTCGCAAGGATATCGTT
TCTCTTACCCGATCTCTGAAAGCTTTAGGCCTGAGGGAGCTAGCTGTCAC
CACCAATGGCGTGGCCCCGGCAAGCAAATATGCGGATCTCGTCGCGGCGG
GCATGACGCATTTCAACATAAGCCTCGATACCTTACAACCAGCTCGATTT
GCATCGATCAGCCGAAGACCAGCCAAGTACCTAGAGGCCGTCCAAGTCAA
TCTGGCACAGCTCTTGGGTCCTTTGGGTGTGGGAGGGAGGGTCAAGTTGA
ATAATGTTGTGATGCGCGGGGTGAACGACGACGAGCTTGCAGATTTTGTT
GCCTTGACGGCCGAGCAAAAATTGGACGTGCGATTCATTGAATGGATGCC
ATTTGATAGCAATGGGTGGAATAAAACGACCTTCGTGCCATACACGGAAA
TGACCACGAGGCTGAAAGAGGCTTTTCCGTCTGTTGCTCGGGCAGTGGAC
GCGCCGCATGACACGACGAAGTGGTGGCGAGTCCCGGGATACAAGGGAAG
GGTGGGATTTATAACGTCGATGAGTCAGCACTTCTGCGGCTCGTGTAATC
GGCTGCGAATCACGGCGGATGGCAAGCTGAAGGTGTGTTTGTTTGGCGCG
GAGGACTTGAGTTTGAGGGATGCGTTGAGAGAGGGGCGGACGGAGGAAGA
GATGTTAAGAATGGTGGGACGGGCGGTGGGATTAAAGAAATTTTCATTGG
GAGGACAGGAAGACATGTTTGCCTTGGCCAAGTCAAAGAATCGGCCGATG
ATATTGATCGGCGGGTAGGAGAAGGGGGAAGGGAGGGAAGGAGACAAAGG
AAGGGAGGAGATGGTGAAGTGAAAGAAAGGGCACTGAAGATTGGAGGCGT
GCACCAAGTGATAAGGGCAAGAAGCAGAAATTAATAGGCTTTAAGAAATC
GAGCCAAAAAAAAATATGCGTGGAACCGAAATGAAAAATGAAGAAAGACA
GGCGT

protein sequence of jgi.p|Nanoce1779_2|579253

>mRNA_2148-protein ID=mRNA_2148-protein|Name=jgi.p|Nanoce1779_2|579253|organism=Nannochloropsis oceanica|type=polypeptide|length=465bp
MPLLTSAATATTRAIVRRAGRRRCGCQRSNLSSVRVADIPAPESPTSAAA
AEPQSIPPKSKPFSTASSPRLQELRARIRNEGSSLQMFFQPSPPLQPPTP
LHLSSQPAVLLDEDEDEGPASTLGPLASVERAPLTDSFGRQHTYLRISLT
ERCNLRCTYCMPEEGVQLQAQDRLLSTDEVLRIAEIFVRMGVTKIRLTGG
EPLVRKDIVSLTRSLKALGLRELAVTTNGVAPASKYADLVAAGMTHFNIS
LDTLQPARFASISRRPAKYLEAVQVNLAQLLGPLGVGGRVKLNNVVMRGV
NDDELADFVALTAEQKLDVRFIEWMPFDSNGWNKTTFVPYTEMTTRLKEA
FPSVARAVDAPHDTTKWWRVPGYKGRVGFITSMSQHFCGSCNRLRITADG
KLKVCLFGAEDLSLRDALREGRTEEEMLRMVGRAVGLKKFSLGGQEDMFA
LAKSKNRPMILIGG*

mRNA from alignment at scaffold_4:903740..905444+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2148 ID=mRNA_2148|Name=jgi.p|Nanoce1779_2|579253|organism=Nannochloropsis oceanica|type=mRNA|length=1705bp|location=Sequence derived from alignment at scaffold_4:903740..905444+ (Nannochloropsis oceanica)
AGCACAGGAAAGAGCTGAAGGTCTCCCGCAATCCGTCGACGTCTCTACTA
TCCTACTTTCCCCTCCCCTACCCCCCCCATCACGTCATAACTCGAATATC
CGCCCCCTAGACGCCCCTGGAAAATGCCCTTGCTGACGTCGGCGGCCACC
GCCACCACCAGAGCAATAGTACGACGCGCAGGAAGACGGAGATGTGGTTG
TCAACGATCCAACTTGTCCAGCGTGCGCGTGGCCGATATCCCCGCACCCG
AGTCACCAACATCAGCAGCAGCAGCAGAGCCTCAATCCATCCCCCCCAAA
TCCAAGCCCTTCTCCACCGCGTCATCTCCACGCCTCCAAGAGCTCCGCGC
AAGAATACGAAATGAGGGATCTTCGCTTCAAATGTTTTTCCAGCCGTCAC
CGCCTCTACAACCACCAACACCTCTCCACCTCTCGTCGCAGCCGGCCGTC
CTGCTTGACGAGGACGAAGACGAAGGTCCCGCGTCCACCCTCGGCCCGCT
CGCCTCCGTTGAACGAGCCCCATTGACCGATTCTTTTGGAAGACAGCATA
CCTACCTCCGCATCTCCCTCACCGAGCGCTGCAATCTCCGCTGCACGTAC
TGCATGCCTGAGGAAGGCGTCCAACTCCAAGCCCAAGACCGCCTCCTGAG
CACCGACGAAGTCCTGCGAATTGCCGAGATATTCGTGCGTATGGGAGTAA
CCAAGATCAGACTTACAGGAGGCGAGCCATTAGTTCGCAAGGATATCGTT
TCTCTTACCCGATCTCTGAAAGCTTTAGGCCTGAGGGAGCTAGCTGTCAC
CACCAATGGCGTGGCCCCGGCAAGCAAATATGCGGATCTCGTCGCGGCGG
GCATGACGCATTTCAACATAAGCCTCGATACCTTACAACCAGCTCGATTT
GCATCGATCAGCCGAAGACCAGCCAAGTACCTAGAGGCCGTCCAAGTCAA
TCTGGCACAGCTCTTGGGTCCTTTGGGTGTGGGAGGGAGGGTCAAGTTGA
ATAATGTTGTGATGCGCGGGGTGAACGACGACGAGCTTGCAGATTTTGTT
GCCTTGACGGCCGAGCAAAAATTGGACGTGCGATTCATTGAATGGATGCC
ATTTGATAGCAATGGGTGGAATAAAACGACCTTCGTGCCATACACGGAAA
TGACCACGAGGCTGAAAGAGGCTTTTCCGTCTGTTGCTCGGGCAGTGGAC
GCGCCGCATGACACGACGAAGTGGTGGCGAGTCCCGGGATACAAGGGAAG
GGTGGGATTTATAACGTCGATGAGTCAGCACTTCTGCGGCTCGTGTAATC
GGCTGCGAATCACGGCGGATGGCAAGCTGAAGGTGTGTTTGTTTGGCGCG
GAGGACTTGAGTTTGAGGGATGCGTTGAGAGAGGGGCGGACGGAGGAAGA
GATGTTAAGAATGGTGGGACGGGCGGTGGGATTAAAGAAATTTTCATTGG
GAGGACAGGAAGACATGTTTGCCTTGGCCAAGTCAAAGAATCGGCCGATG
ATATTGATCGGCGGGTAGGAGAAGGGGGAAGGGAGGGAAGGAGACAAAGG
AAGGGAGGAGATGGTGAAGTGAAAGAAAGGGCACTGAAGATTGGAGGCGT
GCACCAAGTGATAAGGGCAAGAAGCAGAAATTAATAGGCTTTAAGAAATC
GAGCCAAAAAAAAATATGCGTGGAACCGAAATGAAAAATGAAGAAAGACA
GGCGT

Coding sequence (CDS) from alignment at scaffold_4:903740..905444+

>mRNA_2148 ID=mRNA_2148|Name=jgi.p|Nanoce1779_2|579253|organism=Nannochloropsis oceanica|type=CDS|length=1395bp|location=Sequence derived from alignment at scaffold_4:903740..905444+ (Nannochloropsis oceanica)
ATGCCCTTGCTGACGTCGGCGGCCACCGCCACCACCAGAGCAATAGTACG
ACGCGCAGGAAGACGGAGATGTGGTTGTCAACGATCCAACTTGTCCAGCG
TGCGCGTGGCCGATATCCCCGCACCCGAGTCACCAACATCAGCAGCAGCA
GCAGAGCCTCAATCCATCCCCCCCAAATCCAAGCCCTTCTCCACCGCGTC
ATCTCCACGCCTCCAAGAGCTCCGCGCAAGAATACGAAATGAGGGATCTT
CGCTTCAAATGTTTTTCCAGCCGTCACCGCCTCTACAACCACCAACACCT
CTCCACCTCTCGTCGCAGCCGGCCGTCCTGCTTGACGAGGACGAAGACGA
AGGTCCCGCGTCCACCCTCGGCCCGCTCGCCTCCGTTGAACGAGCCCCAT
TGACCGATTCTTTTGGAAGACAGCATACCTACCTCCGCATCTCCCTCACC
GAGCGCTGCAATCTCCGCTGCACGTACTGCATGCCTGAGGAAGGCGTCCA
ACTCCAAGCCCAAGACCGCCTCCTGAGCACCGACGAAGTCCTGCGAATTG
CCGAGATATTCGTGCGTATGGGAGTAACCAAGATCAGACTTACAGGAGGC
GAGCCATTAGTTCGCAAGGATATCGTTTCTCTTACCCGATCTCTGAAAGC
TTTAGGCCTGAGGGAGCTAGCTGTCACCACCAATGGCGTGGCCCCGGCAA
GCAAATATGCGGATCTCGTCGCGGCGGGCATGACGCATTTCAACATAAGC
CTCGATACCTTACAACCAGCTCGATTTGCATCGATCAGCCGAAGACCAGC
CAAGTACCTAGAGGCCGTCCAAGTCAATCTGGCACAGCTCTTGGGTCCTT
TGGGTGTGGGAGGGAGGGTCAAGTTGAATAATGTTGTGATGCGCGGGGTG
AACGACGACGAGCTTGCAGATTTTGTTGCCTTGACGGCCGAGCAAAAATT
GGACGTGCGATTCATTGAATGGATGCCATTTGATAGCAATGGGTGGAATA
AAACGACCTTCGTGCCATACACGGAAATGACCACGAGGCTGAAAGAGGCT
TTTCCGTCTGTTGCTCGGGCAGTGGACGCGCCGCATGACACGACGAAGTG
GTGGCGAGTCCCGGGATACAAGGGAAGGGTGGGATTTATAACGTCGATGA
GTCAGCACTTCTGCGGCTCGTGTAATCGGCTGCGAATCACGGCGGATGGC
AAGCTGAAGGTGTGTTTGTTTGGCGCGGAGGACTTGAGTTTGAGGGATGC
GTTGAGAGAGGGGCGGACGGAGGAAGAGATGTTAAGAATGGTGGGACGGG
CGGTGGGATTAAAGAAATTTTCATTGGGAGGACAGGAAGACATGTTTGCC
TTGGCCAAGTCAAAGAATCGGCCGATGATATTGATCGGCGGGTAG

Synonyms

Publications