jgi.p|Nanoce1779_2|295115, mRNA_2147 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|295115
Unique Name	mRNA_2147
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1359
Alignment location	scaffold_4:901396..903337 +

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Properties


Property Name	Value
TranscriptId	295201
Track	FilteredModels2
ProteinId	295115

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:901396..903337 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|295115	gene_2147	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|295115	mRNA_2147-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2147	CDS_2147	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:901396..903337+
coding sequence from alignment at scaffold_4:901396..903337+

mRNA sequence

>mRNA_2147 ID=mRNA_2147|Name=jgi.p|Nanoce1779_2|295115|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp
TGGTTATCCTCCCTCATACACTCATGTCGTAGGCTTCAGAAATAGCATCA
GCATCTCGACATGGAGCTGCTGGAGGAGGAGGATGCCGAGGTGATGATGG
GGACGTTCCTCGTCTTGGCTTCGGCACAAACTCGTGCTCTTGAGACACAG
TTCAAAGCAACACCTCCACAAGTCCACCACAAAGAGGGCATTGGTAACAA
AAATGCGACTACTCAATTTTCCCCTTTCAGCCACCTTCTGCAGGTGCGCC
CAGACCTGCCTCACATCTTCGTCTCATCCAAGCAAGTTCCGCAAGGAAAA
TGCTGCCGCGCACGCCCTTGGCCTTGCTTCTGCTGGTAGCCCTTGTCGTC
CTACTTCAGCCGCTCCCTGGCCAAGCGGCCAGCCCCAAATTTTCGCATCC
CCACAATGGCGTACTGGAGAAATACGAGCTTAAGGTTCCCAAGATCAGCC
TTGACAGCGACGCCTTGTCCAAGCTCGAAAAGGGTCAGCCGGTAAAGAAG
CAGATTCAGTCAGCGGGCAAATCTGGGGGAAGGGGCATTGTCATCCAGGA
TGTGCATGCCCCACCCGCCATGGTGATGGACCGCATTTTGGATTTTGGCA
ATTACAACAAAATGGTGCCAAATGTTGCGCAGTGCGGTAACTATGCTACG
CGGAAATTGAGGAATGGTGACTTGGAGCTGAAAACACGCTATGTCCTCTC
GATCCTTGGCTTTAAACTCGAATACTTCGTTCGACACATCTACCGCCCCT
CCATCCACTCGCTCGTTTGGACGCTCGACTACGACCGCGCCTCTGATCTC
GATGACACGGCTGGGTACTGGTCCGTGGTGCCTTTGAAGAAAAAGGGCGG
GAAAGACGAAGGGGAGTGGTCGCGGGTTTTTTATTCGATCGACCTTCGGA
TTCCGGCGTGGATTCCTCAGTTTGTGGTGAACATTCTTAATACGCAAGCC
CTGACCTCGGCAACTGCGTGGGTCAAGACACAAAGTGAGAAGAAATTTCA
GGCTTCACTTTCTAGGAAGACTGTAGCACCTGCTGCTGCTCCTGTTGTCA
TGATGGGGACTGCGGACGGTGGAAATTCAAGGAGGGGCGAGGAGAAGAAG
AAGACGAGGAAGTTTGGAGGGGGGGATTTGTGGGAGGGTTTCATTGATGA
GTTTTCGGATATTATTGACACGGAGATGTACGCGTAAAAAGGAGAAAGAA
GGGGAAGGAAGGAGTGAAGGTAGAGATGTCCGGGCCAGGACACGACGACG
CGCGCAATGTTTTGGTGTTTTTGTGGGTGTCGATTTTGACGTATGGGCTG
ATTCAGCTGTGGTCTAAGGATGACAAGAGCAACACAAAGCAGCAGCCGCA
ACAGCACCA

protein sequence of jgi.p|Nanoce1779_2|295115

>mRNA_2147-protein ID=mRNA_2147-protein|Name=jgi.p|Nanoce1779_2|295115|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MLPRTPLALLLLVALVVLLQPLPGQAASPKFSHPHNGVLEKYELKVPKIS
LDSDALSKLEKGQPVKKQIQSAGKSGGRGIVIQDVHAPPAMVMDRILDFG
NYNKMVPNVAQCGNYATRKLRNGDLELKTRYVLSILGFKLEYFVRHIYRP
SIHSLVWTLDYDRASDLDDTAGYWSVVPLKKKGGKDEGEWSRVFYSIDLR
IPAWIPQFVVNILNTQALTSATAWVKTQSEKKFQASLSRKTVAPAAAPVV
MMGTADGGNSRRGEEKKKTRKFGGGDLWEGFIDEFSDIIDTEMYA*

mRNA from alignment at scaffold_4:901396..903337+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2147 ID=mRNA_2147|Name=jgi.p|Nanoce1779_2|295115|organism=Nannochloropsis oceanica|type=mRNA|length=1942bp|location=Sequence derived from alignment at scaffold_4:901396..903337+ (Nannochloropsis oceanica)
TGGTTATCCTCCCTCATACACTCATGTCGTAGGCTTCAGAAATAGCATCA
GCATCTCGACATGGAGCTGCTGGAGGAGGAGGATGCCGAGGTGATGATGG
GGACGTTCCTCGTCTTGGCTTCGGCACAAACTCGTGCTCTTGAGACACAG
TTCAAAGCAACACCTCCACAAGTCCACCACAAAGAGGGCATTGGTAACAA
AAATGCGACTACTCAATTTTCCCCTTTCAGCCACCTTCTGCAGGTGCGCC
CAGACCTGCCTCACATCTTCGTCTCATCCAAGCAAGTTCCGCAAGGAAAA
TGCTGCCGCGCACGCCCTTGGCCTTGCTTCTGCTGGTAGCCCTTGTCGTC
CTACTTCAGCCGCTCCCTGGCCAAGCGGCCAGCCCCAAATTTTCGCATCC
CCACAATGGCGTACTGGAGGTAAAAAGACGAGAGGAAAAGAGATACATTC
TCCGCGTCGAGGTGTAGTGATGGCCGACGGCCTAAACACGAGGATGATCA
TGCAATGTAATCATGTACCTTTCTTGACACTACAAATAGAAATACGAGCT
TAAGGTTCCCAAGATCAGCCTTGACAGCGACGCCTTGTCCAAGCTCGAAA
AGGGTCAGCCGGTAAAGAAGCAGATTCAGTCAGCGGGCAAATCTGGGGGA
AGGGGCATTGTCATCCAGGATGTGCATGCCCCACCCGCCATGGTGATGGA
CCGCATTTTGGATTTTGGCAATTACAACAAAATGGTGCCAAATGTTGCGC
AGTGCGGTAACTATGCTACGCGGAAATTGAGGAATGTGAGTGTGGAGGAT
GGGGGGCAGATGGCAGGGTAGTGAGAAAGGAAAGGCAAAAAAGGCAGCGG
CATGACCAGGGTGGAGCCCGCGAAGTGTCATCATCAATTCATTTTGTGTG
GCTGCGATTAAGCATTAATTTTGCCCGCCCACTCCGGTCCATGACGAGTC
TTGACAAAGAGCGACGGAGGCAAGACTTGGGGGGCATTTGGCGCCAACGA
GCCTACTGGTGGTTGCATGTTTTGGGAAGTCTAGCACTGAACAATTGTTG
CGTCCTCAATAACTCCTAATGTGATAGTTCATATTCCACTATGCTTTTCC
AATCACAGCGAAACCGCCCCTCATTCCCTTCCTCCCTTCATCCATTCCAA
ATGAACACGATTATGTCCTCCCGATTCATCCACACAGGGTGACTTGGAGC
TGAAAACACGCTATGTCCTCTCGATCCTTGGCTTTAAACTCGAATACTTC
GTTCGACACATCTACCGCCCCTCCATCCACTCGCTCGTTTGGACGCTCGA
CTACGACCGCGCCTCTGATCTCGATGACACGGCTGGGTACTGGTCCGTGG
TGCCTTTGAAGAAAAAGGGCGGGAAAGACGAAGGGGAGTGGTCGCGGGTT
TTTTATTCGATCGACCTTCGGATTCCGGCGTGGATTCCTCAGTTTGTGGT
GAACATTCTTAATACGCAAGCCCTGACCTCGGCAACTGCGTGGGTCAAGA
CACAAAGTGAGAAGAAATTTCAGGCTTCACTTTCTAGGAAGACTGTAGCA
CCTGCTGCTGCTCCTGTTGTCATGATGGGGACTGCGGACGGTGGAAATTC
AAGGAGGGGCGAGGAGAAGAAGAAGACGAGGAAGTTTGGAGGGGGGGATT
TGTGGGAGGGTTTCATTGATGAGTTTTCGGATATTATTGACACGGAGATG
TACGCGCAAAAAGTAAGAGCGAGGGAGGAGAAGCGGAAGGATGAGGAAGC
AGGTAAAGAGAAGAAGGTAAAAAGGAGAAAGAAGGGGAAGGAAGGAGTGA
AGGTAGAGATGTCCGGGCCAGGACACGACGACGCGCGCAATGTTTTGGTG
TTTTTGTGGGTGTCGATTTTGACGTATGGGCTGATTCAGCTGTGGTCTAA
GGATGACAAGAGCAACACAAAGCAGCAGCCGCAACAGCACCA

Coding sequence (CDS) from alignment at scaffold_4:901396..903337+

>mRNA_2147 ID=mRNA_2147|Name=jgi.p|Nanoce1779_2|295115|organism=Nannochloropsis oceanica|type=CDS|length=3552bp|location=Sequence derived from alignment at scaffold_4:901396..903337+ (Nannochloropsis oceanica)
ATGCTGCCGCGCACGCCCTTGGCCTTGCTTCTGCTGGTAGCCCTTGTCGT
CCTACTTCAGCCGCTCCCTGGCCAAGCGGCCAGCCCCAAATTTTCGCATC
CCCACAATGGCGTACTGGAGAAATACGAGCTTAAGGTTCCCAAGATCAGC
CTTGACAGCGACGCCTTGTCCAAGCTCGAAAAGGGTCAGCCGGTAAAGAA
GCAGATTCAGTCAGCGGGCAAATCTGGGGGAAGGGGCATTGTCATCCAGG
ATGTGCATGCCCCACCCGCCATGGTGATGGACCGCATTTTGGATTTTGGC
AATTACAACAAAATGGTGCCAAATGTTGCGCAGTGCGGTAACTATGCTAC
GCGGAAATTGAGGAATGGTGACTTGGAGCTGAAAACACGCTATGTCCTCT
CGATCCTTGGCTTTAAACTCGAATACTTCGTTCGACACATCTACCGCCCC
TCCATCCACTCGCTCGTTTGGACGCTCGACTACGACCGCGCCTCTGATCT
CGATGACACGGCTGGGTACTGGTCCGTGGTGCCTTTGAAGAAAAAGGGCG
GGAAAGACGAAGGGGAGTGGTCGCGGGTTTTTTATTCGATCGACCTTCGG
ATTCCGGCGTGGATTCCTCAGTTTGTGGTGAACATTCTTAATACGCAAGC
CCTGACCTCGGCAACTGCGTGGGTCAAGACACAAAGTGAGAAGAAATTTC
AGGCTTCACTTTCTAGGAAGACTGTAGCACCTGCTGCTGCTCCTGTTGTC
ATGATGGGGACTGCGGACGGTGGAAATTCAAGGAGGGGCGAGGAGAAGAA
GAAGACGAGGAAGTTTGGAGGGGGGGATTTGTGGGAGGGTTTCATTGATG
AGTTTTCGGATATTATTGACACGGAGATGTACGCGTAAATGCTGCCGCGC
ACGCCCTTGGCCTTGCTTCTGCTGGTAGCCCTTGTCGTCCTACTTCAGCC
GCTCCCTGGCCAAGCGGCCAGCCCCAAATTTTCGCATCCCCACAATGGCG
TACTGGAGAAATACGAGCTTAAGGTTCCCAAGATCAGCCTTGACAGCGAC
GCCTTGTCCAAGCTCGAAAAGGGTCAGCCGGTAAAGAAGCAGATTCAGTC
AGCGGGCAAATCTGGGGGAAGGGGCATTGTCATCCAGGATGTGCATGCCC
CACCCGCCATGGTGATGGACCGCATTTTGGATTTTGGCAATTACAACAAA
ATGGTGCCAAATGTTGCGCAGTGCGGTAACTATGCTACGCGGAAATTGAG
GAATGGTGACTTGGAGCTGAAAACACGCTATGTCCTCTCGATCCTTGGCT
TTAAACTCGAATACTTCGTTCGACACATCTACCGCCCCTCCATCCACTCG
CTCGTTTGGACGCTCGACTACGACCGCGCCTCTGATCTCGATGACACGGC
TGGGTACTGGTCCGTGGTGCCTTTGAAGAAAAAGGGCGGGAAAGACGAAG
GGGAGTGGTCGCGGGTTTTTTATTCGATCGACCTTCGGATTCCGGCGTGG
ATTCCTCAGTTTGTGGTGAACATTCTTAATACGCAAGCCCTGACCTCGGC
AACTGCGTGGGTCAAGACACAAAGTGAGAAGAAATTTCAGGCTTCACTTT
CTAGGAAGACTGTAGCACCTGCTGCTGCTCCTGTTGTCATGATGGGGACT
GCGGACGGTGGAAATTCAAGGAGGGGCGAGGAGAAGAAGAAGACGAGGAA
GTTTGGAGGGGGGGATTTGTGGGAGGGTTTCATTGATGAGTTTTCGGATA
TTATTGACACGGAGATGTACGCGTAAATGCTGCCGCGCACGCCCTTGGCC
TTGCTTCTGCTGGTAGCCCTTGTCGTCCTACTTCAGCCGCTCCCTGGCCA
AGCGGCCAGCCCCAAATTTTCGCATCCCCACAATGGCGTACTGGAGAAAT
ACGAGCTTAAGGTTCCCAAGATCAGCCTTGACAGCGACGCCTTGTCCAAG
CTCGAAAAGGGTCAGCCGGTAAAGAAGCAGATTCAGTCAGCGGGCAAATC
TGGGGGAAGGGGCATTGTCATCCAGGATGTGCATGCCCCACCCGCCATGG
TGATGGACCGCATTTTGGATTTTGGCAATTACAACAAAATGGTGCCAAAT
GTTGCGCAGTGCGGTAACTATGCTACGCGGAAATTGAGGAATGGTGACTT
GGAGCTGAAAACACGCTATGTCCTCTCGATCCTTGGCTTTAAACTCGAAT
ACTTCGTTCGACACATCTACCGCCCCTCCATCCACTCGCTCGTTTGGACG
CTCGACTACGACCGCGCCTCTGATCTCGATGACACGGCTGGGTACTGGTC
CGTGGTGCCTTTGAAGAAAAAGGGCGGGAAAGACGAAGGGGAGTGGTCGC
GGGTTTTTTATTCGATCGACCTTCGGATTCCGGCGTGGATTCCTCAGTTT
GTGGTGAACATTCTTAATACGCAAGCCCTGACCTCGGCAACTGCGTGGGT
CAAGACACAAAGTGAGAAGAAATTTCAGGCTTCACTTTCTAGGAAGACTG
TAGCACCTGCTGCTGCTCCTGTTGTCATGATGGGGACTGCGGACGGTGGA
AATTCAAGGAGGGGCGAGGAGAAGAAGAAGACGAGGAAGTTTGGAGGGGG
GGATTTGTGGGAGGGTTTCATTGATGAGTTTTCGGATATTATTGACACGG
AGATGTACGCGTAAATGCTGCCGCGCACGCCCTTGGCCTTGCTTCTGCTG
GTAGCCCTTGTCGTCCTACTTCAGCCGCTCCCTGGCCAAGCGGCCAGCCC
CAAATTTTCGCATCCCCACAATGGCGTACTGGAGAAATACGAGCTTAAGG
TTCCCAAGATCAGCCTTGACAGCGACGCCTTGTCCAAGCTCGAAAAGGGT
CAGCCGGTAAAGAAGCAGATTCAGTCAGCGGGCAAATCTGGGGGAAGGGG
CATTGTCATCCAGGATGTGCATGCCCCACCCGCCATGGTGATGGACCGCA
TTTTGGATTTTGGCAATTACAACAAAATGGTGCCAAATGTTGCGCAGTGC
GGTAACTATGCTACGCGGAAATTGAGGAATGGTGACTTGGAGCTGAAAAC
ACGCTATGTCCTCTCGATCCTTGGCTTTAAACTCGAATACTTCGTTCGAC
ACATCTACCGCCCCTCCATCCACTCGCTCGTTTGGACGCTCGACTACGAC
CGCGCCTCTGATCTCGATGACACGGCTGGGTACTGGTCCGTGGTGCCTTT
GAAGAAAAAGGGCGGGAAAGACGAAGGGGAGTGGTCGCGGGTTTTTTATT
CGATCGACCTTCGGATTCCGGCGTGGATTCCTCAGTTTGTGGTGAACATT
CTTAATACGCAAGCCCTGACCTCGGCAACTGCGTGGGTCAAGACACAAAG
TGAGAAGAAATTTCAGGCTTCACTTTCTAGGAAGACTGTAGCACCTGCTG
CTGCTCCTGTTGTCATGATGGGGACTGCGGACGGTGGAAATTCAAGGAGG
GGCGAGGAGAAGAAGAAGACGAGGAAGTTTGGAGGGGGGGATTTGTGGGA
GGGTTTCATTGATGAGTTTTCGGATATTATTGACACGGAGATGTACGCGT
AA

Synonyms

Publications