jgi.p|Nanoce1779_2|624914, mRNA_2146 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|624914
Unique Name	mRNA_2146
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3412
Alignment location	scaffold_4:899378..902789 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	625000
Track	FilteredModels2
ProteinId	624914

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:899378..902789 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|624914	gene_2146	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|624914	mRNA_2146-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2146	CDS_2146	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:899378..902789-
coding sequence from alignment at scaffold_4:899378..902789-

mRNA sequence

>mRNA_2146 ID=mRNA_2146|Name=jgi.p|Nanoce1779_2|624914|organism=Nannochloropsis oceanica|type=mRNA|length=3412bp
CGACCACTCCCCTTCGTCTTTCCCGCCCTTTTTCTTCAAAGGCACCACGG
ACCAGTACCCAGCCGTGTCATCGAGATCAGAGGCGCGGTCGTAGTCGAGC
GTCCAAACGAGCGAGTGGATGGAGGGGCGGTAGATGTGTCGAACGAAGTA
TTCGAGTTTAAAGCCAAGGATCGAGAGGACATAGCGTGTTTTCAGCTCCA
AGTCACCCTGTGTGGATGAATCGGGAGGACATAATCGTGTTCATTTGGAA
TGGATGAAGGGAGGAAGGGAATGAGGGGCGGTTTCGCTGTGATTGGAAAA
GCATAGTGGAATATGAACTATCACATTAGGAGTTATTGAGGACGCAACAA
TTGTTCAGTGCTAGACTTCCCAAAACATGCAACCACCAGTAGGCTCGTTG
GCGCCAAATGCCCCCCAAGTCTTGCCTCCGTCGCTCTTTGTCAAGACTCG
TCATGGACCGGAGTGGGCGGGCAAAATTAATGCTTAATCGCAGCCACACA
AAATGAATTGATGATGACACTTCGCGGGCTCCACCCTGGTCATGCCGCTG
CCTTTTTTGCCTTTCCTTTCTCACTACCCTGCCATCTGCCCCCCATCCTC
CACACTCACATTCCTCAATTTCCGCGTAGCATAGTTACCGCACTGCGCAA
CATTTGGCACCATTTTGTTGTAATTGCCAAAATCCAAAATGCGGTCCATC
ACCATGGCGGGTGGGGCATGCACATCCTGGATGACAATGCCCCTTCCCCC
AGATTTGCCCGCTGACTGAATCTGCTTCTTTACCGGCTGACCCTTTTCGA
GCTTGGACAAGGCGTCGCTGTCAAGGCTGATCTTGGGAACCTTAAGCTCG
TATTTCTATTTGTAGTGTCAAGAAAGGTACATGATTACATTGCATGATCA
TCCTCGTGTTTAGGCCGTCGGCCATCACTACACCTCGACGCGGAGAATGT
ATCTCTTTTCCTCTCGTCTTTTTACCTCCAGTACGCCATTGTGGGGATGC
GAAAATTTGGGGCTGGCCGCTTGGCCAGGGAGCGGCTGAAGTAGGACGAC
AAGGGCTACCAGCAGAAGCAAGGCCAAGGGCGTGCGCGGCAGCATTTTCC
TTGCGGAACTTGCTTGGATGAGACGAAGATGTGAGGCAGGTCTGGGCGCA
CCTGCAGAAGGTGGCTGAAAGGGGAAAATTGAGTAGTCGCATTTTTGTTA
CCAATGCCCTCTTTGTGGTGGACTTGTGGAGGTGTTGCTTTGAACTGTGT
CTCAAGAGCACGAGTTTGTGCCGAAGCCAAGACGAGGAACGTCCCCATCA
TCACCTCGGCATCCTCCTCCTCCAGCAGCTCCATGTCGAGATGCTGATGC
TATTTCTGAAGCCTACGACATGAGTGTATGAGGGAGGATAACCAAAAAAG
CTCTTCCGGCACGTTCAGGATCCTGGGCTTGCATTTTCGGGTCACCTTTT
GTCAATCAAAAAGCAAGACCCTTCTCAACCGAGATTCGACCTCCTCACCC
CGCTCCGCACAACCCCCAACCCACATTTTTTTTTGTGGAAAAAAACAATT
GTATACAGCCTATGCATTCTGAAGCGCTATTTCTCCTGTAAACGTGGCTG
AGGAGCGACGCTTAGCTCCTCAACTTCGACAAGCCCCTAAATCGACTCAC
CCTCAACCCCCTCCACGTACACCACATCTCACAGGGAAAAACCATGATGC
TATGGAGATCCGCCGCCGCGTCCACTACTATCCGGACCCGGGCATCCTTC
TTCCTACTTGGATCATGGGAGGTTAACCGTGCTTTTGCTACGGCCCCTTT
GGCCCTGGTCAAAGAGCTTCGTGACGCCTCGGGTGCCCCTATCACGGACT
GCAAAAAAGCCTTGGAAGCCGAGGGCGTTGAAGGGGACCTGGCCAAGGCA
TTCGAATGGCTTCGTAAAAAAGGGCAAGCCACGGTCATGAAGAACAATCG
GGCGGCCAACGAGGGGCTGGTCGGTATTGCTGTCGAGGGCTCCGCGGGAG
TGATTGTCGAGGTGAACAGCGAGACTGATTTCGTGGCCCGCAACGCCGAC
TTCCAAGTCTTCATCAAAGATCTCGCCACCGCCATTCTTCACATGCCCCC
CCCCATGGGCCAACATGGCGAGCTCAGCAACAGCGTTTTGATAGAAATGG
ACATTCCTTCCCTCCTCGAGCAAGCCACCAGCTCAAACGGCGCCTCCCTC
TCCCAAGAACTCGCAGACCTCGTTGCGAAAATCCGCGAAAACATTTCCGT
TCGGCGCGCCGCCCGCCTCGTCCTTCCCTCTGACACCAAGGGTTTCGTCG
CTTCCTATGTGCATAACGCACTCAACCCCGCCATGGGCGCCGCTGCCGGC
CTTGTGGCGATCCAATCATCGAAAACCCCAACAGATGCCCCTGCGCTTGG
CCTCTTCGGGAAACGCCTCGCCATGCACGTTGTCGCGGCCAAGCCTCGTT
ACCTCTCCCCCTCCTCCATCCCTCCCTCAGTCTTGGAATACGAGCGTAGC
TTGATAGCAGCTCAAGCTGCGGGAAGCAACAAACCGGCTAAGGTTGTGGC
AAAAATGACGGAGGGGAGGCTGAGAAAGGTGTTGGGGGAGATTTCCCTGT
TGGAACAGCAGCACATGATAGAGGAGGGGAAGCCGATCGTATCTGAGCTT
GCGGCACGGGTGGGTAAGGAACAGGGATGTGAGGGGATGGAGGTAGTGGG
TTTTGTGAGGTACAAGTGTGGTGATGTGGAGGAGTTGGGGAAGGGAAGGA
ATAATTAGAGAGAGGGGAGTGAGGGGATGAGGGAGGGAAGTATGTTGGTG
GTGAGAAGATGAGACGTACAAATAAAGCAACAAGAAATAGACAAAGCAAT
CCGCACTGATTCTGATTGGATGTGGGCTGTCATAGTAAAGCGTGCAACCA
CAGGTCTTCCTCCTCGTTTGATGCCCTGTGGAGGCCTCCATTTCTCTCCC
CATGTCATGATTTGCTAAGCAGTGGACGCCCAGTCGGCGCCTTCGCTTGC
TCTCTCGCAGTTGCATTCATAAATGTGCACGTAAACTCAAGCACCTTGCG
TGCATTTTAATTCTCATCCACCCTTTTGGGAAAACGCCATCACCCATTCA
CAAAAGAGCGCGCGGGTAATTTTTCCTCCTCATGTCCTCATCTCTCCACC
TCTGTCCCATCCTCTTCCCCCTCTTCCTCTTCCTCTTCATTACATTTTCT
TTCCGAAAAAGCCGTAAATGCTTTGTTGTCCCCCCGGCCGCGAAGTATAG
GCCGGGACCCCCTTCTTCTTCTCATACTTATCCCAACCACTATTCACCCC
CCCGCTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTG

protein sequence of jgi.p|Nanoce1779_2|624914

>mRNA_2146-protein ID=mRNA_2146-protein|Name=jgi.p|Nanoce1779_2|624914|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MMLWRSAAASTTIRTRASFFLLGSWEVNRAFATAPLALVKELRDASGAPI
TDCKKALEAEGVEGDLAKAFEWLRKKGQATVMKNNRAANEGLVGIAVEGS
AGVIVEVNSETDFVARNADFQVFIKDLATAILHMPPPMGQHGELSNSVLI
EMDIPSLLEQATSSNGASLSQELADLVAKIRENISVRRAARLVLPSDTKG
FVASYVHNALNPAMGAAAGLVAIQSSKTPTDAPALGLFGKRLAMHVVAAK
PRYLSPSSIPPSVLEYERSLIAAQAAGSNKPAKVVAKMTEGRLRKVLGEI
SLLEQQHMIEEGKPIVSELAARVGKEQGCEGMEVVGFVRYKCGDVEELGK
GRNN*

mRNA from alignment at scaffold_4:899378..902789-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2146 ID=mRNA_2146|Name=jgi.p|Nanoce1779_2|624914|organism=Nannochloropsis oceanica|type=mRNA|length=3412bp|location=Sequence derived from alignment at scaffold_4:899378..902789- (Nannochloropsis oceanica)
CGACCACTCCCCTTCGTCTTTCCCGCCCTTTTTCTTCAAAGGCACCACGG
ACCAGTACCCAGCCGTGTCATCGAGATCAGAGGCGCGGTCGTAGTCGAGC
GTCCAAACGAGCGAGTGGATGGAGGGGCGGTAGATGTGTCGAACGAAGTA
TTCGAGTTTAAAGCCAAGGATCGAGAGGACATAGCGTGTTTTCAGCTCCA
AGTCACCCTGTGTGGATGAATCGGGAGGACATAATCGTGTTCATTTGGAA
TGGATGAAGGGAGGAAGGGAATGAGGGGCGGTTTCGCTGTGATTGGAAAA
GCATAGTGGAATATGAACTATCACATTAGGAGTTATTGAGGACGCAACAA
TTGTTCAGTGCTAGACTTCCCAAAACATGCAACCACCAGTAGGCTCGTTG
GCGCCAAATGCCCCCCAAGTCTTGCCTCCGTCGCTCTTTGTCAAGACTCG
TCATGGACCGGAGTGGGCGGGCAAAATTAATGCTTAATCGCAGCCACACA
AAATGAATTGATGATGACACTTCGCGGGCTCCACCCTGGTCATGCCGCTG
CCTTTTTTGCCTTTCCTTTCTCACTACCCTGCCATCTGCCCCCCATCCTC
CACACTCACATTCCTCAATTTCCGCGTAGCATAGTTACCGCACTGCGCAA
CATTTGGCACCATTTTGTTGTAATTGCCAAAATCCAAAATGCGGTCCATC
ACCATGGCGGGTGGGGCATGCACATCCTGGATGACAATGCCCCTTCCCCC
AGATTTGCCCGCTGACTGAATCTGCTTCTTTACCGGCTGACCCTTTTCGA
GCTTGGACAAGGCGTCGCTGTCAAGGCTGATCTTGGGAACCTTAAGCTCG
TATTTCTATTTGTAGTGTCAAGAAAGGTACATGATTACATTGCATGATCA
TCCTCGTGTTTAGGCCGTCGGCCATCACTACACCTCGACGCGGAGAATGT
ATCTCTTTTCCTCTCGTCTTTTTACCTCCAGTACGCCATTGTGGGGATGC
GAAAATTTGGGGCTGGCCGCTTGGCCAGGGAGCGGCTGAAGTAGGACGAC
AAGGGCTACCAGCAGAAGCAAGGCCAAGGGCGTGCGCGGCAGCATTTTCC
TTGCGGAACTTGCTTGGATGAGACGAAGATGTGAGGCAGGTCTGGGCGCA
CCTGCAGAAGGTGGCTGAAAGGGGAAAATTGAGTAGTCGCATTTTTGTTA
CCAATGCCCTCTTTGTGGTGGACTTGTGGAGGTGTTGCTTTGAACTGTGT
CTCAAGAGCACGAGTTTGTGCCGAAGCCAAGACGAGGAACGTCCCCATCA
TCACCTCGGCATCCTCCTCCTCCAGCAGCTCCATGTCGAGATGCTGATGC
TATTTCTGAAGCCTACGACATGAGTGTATGAGGGAGGATAACCAAAAAAG
CTCTTCCGGCACGTTCAGGATCCTGGGCTTGCATTTTCGGGTCACCTTTT
GTCAATCAAAAAGCAAGACCCTTCTCAACCGAGATTCGACCTCCTCACCC
CGCTCCGCACAACCCCCAACCCACATTTTTTTTTGTGGAAAAAAACAATT
GTATACAGCCTATGCATTCTGAAGCGCTATTTCTCCTGTAAACGTGGCTG
AGGAGCGACGCTTAGCTCCTCAACTTCGACAAGCCCCTAAATCGACTCAC
CCTCAACCCCCTCCACGTACACCACATCTCACAGGGAAAAACCATGATGC
TATGGAGATCCGCCGCCGCGTCCACTACTATCCGGACCCGGGCATCCTTC
TTCCTACTTGGATCATGGGAGGTTAACCGTGCTTTTGCTACGGCCCCTTT
GGCCCTGGTCAAAGAGCTTCGTGACGCCTCGGGTGCCCCTATCACGGACT
GCAAAAAAGCCTTGGAAGCCGAGGGCGTTGAAGGGGACCTGGCCAAGGCA
TTCGAATGGCTTCGTAAAAAAGGGCAAGCCACGGTCATGAAGAACAATCG
GGCGGCCAACGAGGGGCTGGTCGGTATTGCTGTCGAGGGCTCCGCGGGAG
TGATTGTCGAGGTGAACAGCGAGACTGATTTCGTGGCCCGCAACGCCGAC
TTCCAAGTCTTCATCAAAGATCTCGCCACCGCCATTCTTCACATGCCCCC
CCCCATGGGCCAACATGGCGAGCTCAGCAACAGCGTTTTGATAGAAATGG
ACATTCCTTCCCTCCTCGAGCAAGCCACCAGCTCAAACGGCGCCTCCCTC
TCCCAAGAACTCGCAGACCTCGTTGCGAAAATCCGCGAAAACATTTCCGT
TCGGCGCGCCGCCCGCCTCGTCCTTCCCTCTGACACCAAGGGTTTCGTCG
CTTCCTATGTGCATAACGCACTCAACCCCGCCATGGGCGCCGCTGCCGGC
CTTGTGGCGATCCAATCATCGAAAACCCCAACAGATGCCCCTGCGCTTGG
CCTCTTCGGGAAACGCCTCGCCATGCACGTTGTCGCGGCCAAGCCTCGTT
ACCTCTCCCCCTCCTCCATCCCTCCCTCAGTCTTGGAATACGAGCGTAGC
TTGATAGCAGCTCAAGCTGCGGGAAGCAACAAACCGGCTAAGGTTGTGGC
AAAAATGACGGAGGGGAGGCTGAGAAAGGTGTTGGGGGAGATTTCCCTGT
TGGAACAGCAGCACATGATAGAGGAGGGGAAGCCGATCGTATCTGAGCTT
GCGGCACGGGTGGGTAAGGAACAGGGATGTGAGGGGATGGAGGTAGTGGG
TTTTGTGAGGTACAAGTGTGGTGATGTGGAGGAGTTGGGGAAGGGAAGGA
ATAATTAGAGAGAGGGGAGTGAGGGGATGAGGGAGGGAAGTATGTTGGTG
GTGAGAAGATGAGACGTACAAATAAAGCAACAAGAAATAGACAAAGCAAT
CCGCACTGATTCTGATTGGATGTGGGCTGTCATAGTAAAGCGTGCAACCA
CAGGTCTTCCTCCTCGTTTGATGCCCTGTGGAGGCCTCCATTTCTCTCCC
CATGTCATGATTTGCTAAGCAGTGGACGCCCAGTCGGCGCCTTCGCTTGC
TCTCTCGCAGTTGCATTCATAAATGTGCACGTAAACTCAAGCACCTTGCG
TGCATTTTAATTCTCATCCACCCTTTTGGGAAAACGCCATCACCCATTCA
CAAAAGAGCGCGCGGGTAATTTTTCCTCCTCATGTCCTCATCTCTCCACC
TCTGTCCCATCCTCTTCCCCCTCTTCCTCTTCCTCTTCATTACATTTTCT
TTCCGAAAAAGCCGTAAATGCTTTGTTGTCCCCCCGGCCGCGAAGTATAG
GCCGGGACCCCCTTCTTCTTCTCATACTTATCCCAACCACTATTCACCCC
CCCGCTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTG

Coding sequence (CDS) from alignment at scaffold_4:899378..902789-

>mRNA_2146 ID=mRNA_2146|Name=jgi.p|Nanoce1779_2|624914|organism=Nannochloropsis oceanica|type=CDS|length=1065bp|location=Sequence derived from alignment at scaffold_4:899378..902789- (Nannochloropsis oceanica)
ATGATGCTATGGAGATCCGCCGCCGCGTCCACTACTATCCGGACCCGGGC
ATCCTTCTTCCTACTTGGATCATGGGAGGTTAACCGTGCTTTTGCTACGG
CCCCTTTGGCCCTGGTCAAAGAGCTTCGTGACGCCTCGGGTGCCCCTATC
ACGGACTGCAAAAAAGCCTTGGAAGCCGAGGGCGTTGAAGGGGACCTGGC
CAAGGCATTCGAATGGCTTCGTAAAAAAGGGCAAGCCACGGTCATGAAGA
ACAATCGGGCGGCCAACGAGGGGCTGGTCGGTATTGCTGTCGAGGGCTCC
GCGGGAGTGATTGTCGAGGTGAACAGCGAGACTGATTTCGTGGCCCGCAA
CGCCGACTTCCAAGTCTTCATCAAAGATCTCGCCACCGCCATTCTTCACA
TGCCCCCCCCCATGGGCCAACATGGCGAGCTCAGCAACAGCGTTTTGATA
GAAATGGACATTCCTTCCCTCCTCGAGCAAGCCACCAGCTCAAACGGCGC
CTCCCTCTCCCAAGAACTCGCAGACCTCGTTGCGAAAATCCGCGAAAACA
TTTCCGTTCGGCGCGCCGCCCGCCTCGTCCTTCCCTCTGACACCAAGGGT
TTCGTCGCTTCCTATGTGCATAACGCACTCAACCCCGCCATGGGCGCCGC
TGCCGGCCTTGTGGCGATCCAATCATCGAAAACCCCAACAGATGCCCCTG
CGCTTGGCCTCTTCGGGAAACGCCTCGCCATGCACGTTGTCGCGGCCAAG
CCTCGTTACCTCTCCCCCTCCTCCATCCCTCCCTCAGTCTTGGAATACGA
GCGTAGCTTGATAGCAGCTCAAGCTGCGGGAAGCAACAAACCGGCTAAGG
TTGTGGCAAAAATGACGGAGGGGAGGCTGAGAAAGGTGTTGGGGGAGATT
TCCCTGTTGGAACAGCAGCACATGATAGAGGAGGGGAAGCCGATCGTATC
TGAGCTTGCGGCACGGGTGGGTAAGGAACAGGGATGTGAGGGGATGGAGG
TAGTGGGTTTTGTGAGGTACAAGTGTGGTGATGTGGAGGAGTTGGGGAAG
GGAAGGAATAATTAG

Synonyms

Publications