jgi.p|Nanoce1779_2|579244, mRNA_2145 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579244
Unique NamemRNA_2145
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length591
Alignment locationscaffold_4:898737..899327 -

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Properties
Property NameValue
TranscriptId579330
TrackFilteredModels2
ProteinId579244
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:898737..899327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579244gene_2145Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579244mRNA_2145-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2145CDS_2145Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2145 ID=mRNA_2145|Name=jgi.p|Nanoce1779_2|579244|organism=Nannochloropsis oceanica|type=mRNA|length=591bp
CCCCCATCTCCCACTACTGCCTCCATGGCCACCTCCGCTTCCGGAAGCAA
AAACCTGGCGTGGGGCTGATGGTGGTGGTTGTTGCTGCTGATGTTGTTGC
TGCTGTTGCTGCTGTTGCTGCTGCTGCTGCTGTTGTGGTTGGTCCTGCTG
GTACCGTTGCGGGCGATAGGGCCCTCGGACTGTCGAGGCATGGGGCGTGG
CGTTGGGCCGGTATGGTGGGATTGCTGCTGCTGCTATTCCTCCTCCTTCT
GCGCCTGGTCCTCCTCCTTCTTTTTCTCTGCCTCCTCTTGCTCCTCTCTC
TGAGAATGTACAAGCTGATGAAGAAGGAAAGGAAAGAGGGGGCTGGGAAG
GAGGAGGTAAGGAGGAGACGCCCAAGTAATTCCTCCGTGACATCCATTCA
CCTCCTCCTCCTGCCCCATTCCTTTTATTCAAGAGAGTCACACTCCCCGA
CTTCCACGACGAGTATGGTCCATCCCTTTTCCCGCTCCACCCTCCTTCCC
CCCCTCCACCGCCATGGTAAGCAGCAGCAGCAGCAGTAGCAGCGGCTGGA
TCCTTCTCCTTGTATTTCGCATGTTCTGGCCGCCAGTTGGG
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protein sequence of jgi.p|Nanoce1779_2|579244

>mRNA_2145-protein ID=mRNA_2145-protein|Name=jgi.p|Nanoce1779_2|579244|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MVVVVAADVVAAVAAVAAAAAVVVGPAGTVAGDRALGLSRHGAWRWAGMV
GLLLLLFLLLLRLVLLLLFLCLLLLLSLRMYKLMKKERKEGAGKEEVRRR
RPSNSSVTSIHLLLLPHSFYSRESHSPTSTTSMVHPFSRSTLLPPLHRHG
KQQQQQ*
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mRNA from alignment at scaffold_4:898737..899327-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2145 ID=mRNA_2145|Name=jgi.p|Nanoce1779_2|579244|organism=Nannochloropsis oceanica|type=mRNA|length=591bp|location=Sequence derived from alignment at scaffold_4:898737..899327- (Nannochloropsis oceanica)
CCCCCATCTCCCACTACTGCCTCCATGGCCACCTCCGCTTCCGGAAGCAA
AAACCTGGCGTGGGGCTGATGGTGGTGGTTGTTGCTGCTGATGTTGTTGC
TGCTGTTGCTGCTGTTGCTGCTGCTGCTGCTGTTGTGGTTGGTCCTGCTG
GTACCGTTGCGGGCGATAGGGCCCTCGGACTGTCGAGGCATGGGGCGTGG
CGTTGGGCCGGTATGGTGGGATTGCTGCTGCTGCTATTCCTCCTCCTTCT
GCGCCTGGTCCTCCTCCTTCTTTTTCTCTGCCTCCTCTTGCTCCTCTCTC
TGAGAATGTACAAGCTGATGAAGAAGGAAAGGAAAGAGGGGGCTGGGAAG
GAGGAGGTAAGGAGGAGACGCCCAAGTAATTCCTCCGTGACATCCATTCA
CCTCCTCCTCCTGCCCCATTCCTTTTATTCAAGAGAGTCACACTCCCCGA
CTTCCACGACGAGTATGGTCCATCCCTTTTCCCGCTCCACCCTCCTTCCC
CCCCTCCACCGCCATGGTAAGCAGCAGCAGCAGCAGTAGCAGCGGCTGGA
TCCTTCTCCTTGTATTTCGCATGTTCTGGCCGCCAGTTGGG
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Coding sequence (CDS) from alignment at scaffold_4:898737..899327-

>mRNA_2145 ID=mRNA_2145|Name=jgi.p|Nanoce1779_2|579244|organism=Nannochloropsis oceanica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_4:898737..899327- (Nannochloropsis oceanica)
ATGGTGGTGGTTGTTGCTGCTGATGTTGTTGCTGCTGTTGCTGCTGTTGC
TGCTGCTGCTGCTGTTGTGGTTGGTCCTGCTGGTACCGTTGCGGGCGATA
GGGCCCTCGGACTGTCGAGGCATGGGGCGTGGCGTTGGGCCGGTATGGTG
GGATTGCTGCTGCTGCTATTCCTCCTCCTTCTGCGCCTGGTCCTCCTCCT
TCTTTTTCTCTGCCTCCTCTTGCTCCTCTCTCTGAGAATGTACAAGCTGA
TGAAGAAGGAAAGGAAAGAGGGGGCTGGGAAGGAGGAGGTAAGGAGGAGA
CGCCCAAGTAATTCCTCCGTGACATCCATTCACCTCCTCCTCCTGCCCCA
TTCCTTTTATTCAAGAGAGTCACACTCCCCGACTTCCACGACGAGTATGG
TCCATCCCTTTTCCCGCTCCACCCTCCTTCCCCCCCTCCACCGCCATGGT
AAGCAGCAGCAGCAGCAGTAG
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Synonyms
Publications