jgi.p|Nanoce1779_2|579242, mRNA_2144 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579242
Unique NamemRNA_2144
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1767
Alignment locationscaffold_4:896275..898830 -

Link to JBrowse

Properties
Property NameValue
TranscriptId579328
TrackFilteredModels2
ProteinId579242
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:896275..898830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579242gene_2144Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579242mRNA_2144-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2144CDS_2144Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2144 ID=mRNA_2144|Name=jgi.p|Nanoce1779_2|579242|organism=Nannochloropsis oceanica|type=mRNA|length=1767bp
CCCCCCCTCCACCGCCATGGTAAGCAGCAGCAGCAGCAGTAGCAGCGGCT
GGATCCTTCTCCTTGTATTTCGCATGTTCTGGCCGCCAGTTGGGCGCGAG
GGTTGGGAGCCAGCTGCTTTCGTCGGTGGTCTCCAGGCGGGACTTTCCCT
TGATCTGGGCGTCGTAGAAGGAGATGACGCGGGGGGAGACGCGGAATCGG
TCCTGCCGAAACGCCACCACCCGCAATCCCGCCAGTTTGATCGCTCGCGA
CAAGGCCACGTACGCCTGTCCCTCCTCGAACACGTCATCCAGCTTCACCT
CAAGCCACTCCAAACCCATCCCTTGACTCTTGTGGATCGTCATGGCCCAC
CCCAGCTTTAGGGGCACCTGCACCCTGGCTGCCTTCTTCACTGTGCGCCC
TCTCTCACTGGTCTCCACGGCCCACTCCTCCGGCGCCACGCTTTGTCGCA
CCCCCGACGCAAACTCGACGATGGGTAGATGCTCTTCATCGTGCGTGAAG
CCCACCAGACGGCCTTTGGCGCCGTTCACCAACCCCTGGCCCGGATTAAT
GTTCTTCAACAACATCACCTGTGCCCCTTCCCGTAACCGCAACTTCTGCT
CAGCCAGACAGCTCTTGCGCAATTGCCCCAAGAAGGGCTCTACCCCCGTG
TCCGTGGCCTCGAAGACGTGCTCCTCCTTGCCAGCCAGCGACTCCAACTT
CTTCTGGTTCATGCGATCCACCCGCTCGTTGGTGGCAAAAAGCAACGTGG
GTTCTATCCCCTCCGGTGGCTGAAGCTCCCTCCCCAGTTCCCTCAACAGC
CTCAGACTCCCCGCCGACGCCTTCCCGTATCTCACGTCGTTCAGCAACGC
CACCAATGGTTCCTCCGCCTGCCTAAACACTTTCGACAGCTCATAACAAC
AACCCCTCCCCGGACCAAAAAGCTCTTGCCACACGGGGTGCAGAAACGCA
TAGTCGTGGTCCCCACCCTGCCGGCCCCGGCTCACGGGCGGGAGCTGGAA
GAAGTCGCCGGTGAATATCAGTTGCACGCCACCAAAGGGGAGGTAGGGTT
GGTTTTTGACGTGCTTGGCGATGGCGTCCAGCTTGCTGAGGAGCGAGCCG
TGGAGCATACTCACCTCGTCCACTATCAGCACCTCACACGCTTGCCAGTT
CGCCCCCGCCACCCTGCTCTTGCTGGCGCGCTCTTTCAGAACCTCCACGG
GATCGTCGCCGAGGCCGATGCCCGCAAAGGAATGGAGGGTGGTCCCACCA
ACATTGATTGCAGCAATGCCCGTGGAGGCCGTGACATAAGTCTTTCCTGC
TGGCGCTCGTTCAATAATGGCGCGTAGCAGGTGACTTTTACCGGAGCCGG
CACGCCCACTGTAATACACGTTCTTGCCCTCCATCACGGACCGGAGGATG
CCCTTCTGCTCCTCCGACAGTTCCCCACTTGGCTTTATCTTCTCCGCCGC
GGCCTCACTGACCTCTCCCAATGAGGCGGTGGAGGTTACATCTCTCTCTT
TCTCCTCCTCTTCCCTGTTGTCCTCAAGTGCCCGTTTCAGGCCCGCTTTC
TTGGCTATTGGTTTCGAGGCTGAGGCGGAGACAGAGGCTACGTTTGCTTG
GGGCTTGGAGGGAGAAGGTGCGATAGAAGGTTCGTCCAAGTATCCGGATT
CCCTCAAGTACCGCTCCTCCTCGTCCTCCTCTTCAGCGTACATACCGTCG
TCTTCCCAGCTGAGGTCGATGACATAATTGCCGTTCATGGCCGTTGTGGC
GGGCGTCGAATACGCCT
back to top

protein sequence of jgi.p|Nanoce1779_2|579242

>mRNA_2144-protein ID=mRNA_2144-protein|Name=jgi.p|Nanoce1779_2|579242|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MAHPSFRGTCTLAAFFTVRPLSLVSTAHSSGATLCRTPDANSTMGRCSSS
CVKPTRRPLAPFTNPWPGLMFFNNITCAPSRNRNFCSARQLLRNCPKKGS
TPVSVASKTCSSLPASDSNFFWFMRSTRSLVAKSNVGSIPSGG*
back to top

mRNA from alignment at scaffold_4:896275..898830-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2144 ID=mRNA_2144|Name=jgi.p|Nanoce1779_2|579242|organism=Nannochloropsis oceanica|type=mRNA|length=2556bp|location=Sequence derived from alignment at scaffold_4:896275..898830- (Nannochloropsis oceanica)
CCCCCCCTCCACCGCCATGGTAAGCAGCAGCAGCAGCAGTAGCAGCGGCT
GGATCCTTCTCCTTGTATTTCGCATGTTCTGGCCGCCAGTTGGGCGCGAG
GGTTGGGAGCCAGCTGCTTTCGTCGGTGGTCTCCAGGCGGGACTTTCCCT
TGATCTGGGCGTCGTAGAAGGAGATGACGCGGGGGGAGACGCGGAATCGG
TCCTGAGGAGGTAGAGAGGGAGGTAGGGTGGAGGAGACGAGACAAGGGAG
AAAGTAAAGTACCTTGGGAAGAAACCTTGAGGGGCAAGCAAAGGAGGGGG
GAAGGGGGGAAGGACACTTGACAAACCTGCCGAAACGCCACCACCCGCAA
TCCCGCCAGTTTGATCGCTCGCGACAAGGCCACGTACGCCTGTCCCTCCT
CGAACACGTCATCCAGCTTCACCTCAAGCCACTCCAAACCCATCCCTTGA
CTCTTGTGGATCGTCATGGCCCACCCCAGCTTTAGGGGCACCTGCACCCT
GGCTGCCTTCTTCACTGTGCGCCCTCTCTCACTGGTCTCCACGGCCCACT
CCTCCGGCGCCACGCTTTGTCGCACCCCCGACGCAAACTCGACGATGGGT
AGATGCTCTTCATCGTGCGTGAAGCCCACCAGACGGCCTTTGGCGCCGTT
CACCAACCCCTGGCCCGGATTAATGTTCTTCAACAACATCACCTGTGCCC
CTTCCCGTAACCGCAACTGCGGGAGGAAGGAAGAGGAGGAAGGAGAAGGG
AGGGAGGGAGGAAGGAGAGGAAGGAAGAGATGGGTGGTAGAAGAGAAAAA
GAATTCAATGTGCTGTGGAAGCAAAGGCCCGCGACTTCTCACCTTCTGCT
CAGCCAGACAGCTCTTGCGCAATTGCCCCAAGAAGGGCTCTACCCCCGTG
TCCGTGGCCTCGAAGACGTGCTCCTCCTTGCCAGCCAGCGACTCCAACTT
CTTCTGGTTCATGCGATCCACCCGCTCGTTGGTGGCAAAAAGCAACGTGG
GTTCTATCCCCTCCGGTGGCTGAAGCTCCCTCCCCAGTTCCCTCAACAGC
CTCAGACTCCCCGCCGACGCCTTCCCGTATCTCACGTCGTTCAGCAACGC
CACCAATGGTTCCTCCGCCTGCCTAAACACTTTCGACAGCTCATAACAAC
AACCCCTCCCCGGACCAAAAAGCTCTTGCCACACGGGGTGCAGAAACGCA
TAGTCGTGGTCCCCACCCTGCCGGCCCCGGCTCACGGGCGGGAGCTGGAA
GAAGTCGCCGGTGAATATCAGTTGCACGCCACCAAAGGGGAGGTAGGGTT
GGTTTTTGACGTGCTTGGCGATGGCGTCCAGCTTGCTGAGGAGCGAGCCG
TGGAGCATACTCACCTGTTAAGGAGGGATGCAGCACAGTGTAGGACAGGA
GGTGGTTGTGAGATATAATTGCACCCCAATCTCCCTCCCTCCCTCCCTTT
CTCCCTCCCTCCCTCTCACCTCGTCCACTATCAGCACCTCACACGCTTGC
CAGTTCGCCCCCGCCACCCTGCTCTTGCTGGCGCGCTCTTTCAGAACCTC
CACGGGATCGTCGCCGAGGCCGATGCCCGCAAAGGAATGGAGGGTGGTCC
CTGGAGGGAGGAAGGAGGGGAGAGGGAGGGAGAAACAGGTTGCATCAGAC
TCGTTCAAAGGAGAGAGCGCAAAAAAGATGAGGGAATAAGTAAGGAAACG
CAGGATAAGAAAAGGGAAGGTAGGATGAAAAAAGAGAAAATTCGATCCGA
ATCCAATTTTTAAAAAAAAGGTTAAAAAGGGATCTTAATGCCGAGCACCA
GCAAATTGGGAGAAGACAGTGGTAACTGAAAGGTAGGGTGGGAATGAGGG
AAGGAGGGAAGGAGGGGTGGTAGACTACTCACGTACCACCAACATTGATT
GCAGCAATGCCCGTGGAGGCCGTGACATAAGTCTTTCCTGCTGGCGCTCG
TTCAATAATGGCGCGTAGCAGGTGACTTTTACCGGAGCCGGCACGCCCAC
TGTAATACACGTTCTTGCCCTGTGAAGACGGGGTATGTAGGCGAGTGAGG
GAGAGAGTGGGGTGTGTGAATGGAAGAGGCCGACGAAGCTGCAGCGTCAT
GATTGACTTTTAAAAGGTCAAACACCACAAGCAATGACCGATCATGGCGA
CGAGCTGCAAGACATACCTCCATCACGGACCGGAGGATGCCCTTCTGCTC
CTCCGACAGTTCCCCACTTGGCTTTATCTTCTCCGCCGCGGCCTCACTGA
CCTCTCCCAATGAGGCGGTGGAGGTTACATCTCTCTCTTTCTCCTCCTCT
TCCCTGTTGTCCTCAAGTGCCCGTTTCAGGCCCGCTTTCTTGGCTATTGG
TTTCGAGGCTGAGGCGGAGACAGAGGCTACGTTTGCTTGGGGCTTGGAGG
GAGAAGGTGCGATAGAAGGTTCGTCCAAGTATCCGGATTCCCTCAAGTAC
CGCTCCTCCTCGTCCTCCTCTTCAGCGTACATACCGTCGTCTTCCCAGCT
GAGGTCGATGACATAATTGCCGTTCATGGCCGTTGTGGCGGGCGTCGAAT
ACGCCT
back to top

Coding sequence (CDS) from alignment at scaffold_4:896275..898830-

>mRNA_2144 ID=mRNA_2144|Name=jgi.p|Nanoce1779_2|579242|organism=Nannochloropsis oceanica|type=CDS|length=864bp|location=Sequence derived from alignment at scaffold_4:896275..898830- (Nannochloropsis oceanica)
CTTCTGCTCAGCCAGACAGCTCTTGCGCAATTGCCCCAAGAAGGGCTCTA
CCCCCGTGTCCGTGGCCTCGAAGACGTGCTCCTCCTTGCCAGCCAGCGAC
TCCAACTTCTTCTGGTTCATGCGATCCACCCGCTCGTTGGTGGCAAAAAG
CAACGTGGGTTCTATCCCCTCCGGTGGCTGAATGGCCCACCCCAGCTTTA
GGGGCACCTGCACCCTGGCTGCCTTCTTCACTGTGCGCCCTCTCTCACTG
GTCTCCACGGCCCACTCCTCCGGCGCCACGCTTTGTCGCACCCCCGACGC
AAACTCGACGATGGGTAGATGCTCTTCATCGTGCGTGAAGCCCACCAGAC
GGCCTTTGGCGCCGTTCACCAACCCCTGGCCCGGATTAATGTTCTTCAAC
AACATCACCTGTGCCCCTTCCCGTAACCGCAACTTCTGCTCAGCCAGACA
GCTCTTGCGCAATTGCCCCAAGAAGGGCTCTACCCCCGTGTCCGTGGCCT
CGAAGACGTGCTCCTCCTTGCCAGCCAGCGACTCCAACTTCTTCTGGTTC
ATGCGATCCACCCGCTCGTTGGTGGCAAAAAGCAACGTGGGTTCTATCCC
CTCCGGTGGCTGAATGGCCCACCCCAGCTTTAGGGGCACCTGCACCCTGG
CTGCCTTCTTCACTGTGCGCCCTCTCTCACTGGTCTCCACGGCCCACTCC
TCCGGCGCCACGCTTTGTCGCACCCCCGACGCAAACTCGACGATGGGTAG
ATGCTCTTCATCGTGCGTGAAGCCCACCAGACGGCCTTTGGCGCCGTTCA
CCAACCCCTGGCCCGGATTAATGTTCTTCAACAACATCACCTGTGCCCCT
TCCCGTAACCGCAA
back to top
Synonyms
Publications