jgi.p|Nanoce1779_2|294977, mRNA_2143 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|294977
Unique Name	mRNA_2143
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1181
Alignment location	scaffold_4:895751..897878 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	295063
Track	FilteredModels2
ProteinId	294977

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:895751..897878 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|294977	gene_2143	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|294977	mRNA_2143-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2143	CDS_2143	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:895751..897878+
coding sequence from alignment at scaffold_4:895751..897878+

mRNA sequence

>mRNA_2143 ID=mRNA_2143|Name=jgi.p|Nanoce1779_2|294977|organism=Nannochloropsis oceanica|type=mRNA|length=1181bp
TTGCATACGTAAAGGGATTTCGTGGCTGTCATAACCAGCTGCGCCCCCAA
ACAGGATGTGGATGTCCTGCCATAGATGTGGCATGTTTTCATCAAGTACT
TCAGCGCGTATTCGACGCCCGCCACAACGGCCATGAACGGCAATTATGTC
ATCGACCTCAGCTGGGAAGACGACGCCCCAAGCAAACGTAGCCTCTGTCT
CCGCCTCAGCCTCGAAACCAATAGCCAAGAAAGCGGGCCTGAAACGGGCA
CTTGAGGACAACAGGGAAGAGGAGGAGAAAGAGAGAGATGTAACCTCCAC
CGCCTCATTGGGAGAGGTCAGTGAGGCCGCGGCGGAGAAGATAAAGCCAA
GTGGGGAACTGTCGGAGGAGCAGAAGGGCATCCTCCGGTCCGTGATGGAG
GGCAAGAACGTGTATTACAGTGGGCGTGCCGGCTCCGGTAAAAGTCACCT
GCTACGCGCCATTATTGAACGAGCGCCAGCAGGAAAGACTTATGTCACGG
CCTCCACGGGCATTGCTGCAATCAATGTTGGTGGGACCACCCTCCATTCC
TTTGCGGGCATCGGCCTCGGCGACGATCCCGTGGAGGTTCTGAAAGAGCG
CGCCAGCAAGAGCAGGGTGGCGGGGGCGAACTGGCAAGCGTGTGAGGTGC
TGATAGTGGACGAGGTGAGAGGGAGGGAGGGAGAAAGGGAGGGAGGGAGG
GAGATTGGGGTGCAATTATATCTCACAACCACCTCCTGTCCTACACTGTG
CTGCATCCCTCCTTAACAGGTGAGTATGCTCCACGGCTCGCTCCTCAGCA
AGCTGGACGCCATCGCCAAGCACGTCAAAAACCAACCCTACCTCCCCTTT
GGTGGCGTGCAACTGATATTCACCGGCGACTTCTTCCAGCTCCCGCCCGT
GAGCCGGGGCCGGCAGGGTGGGGACCACGACTATGCGTTTCTGCACCCCG
TGTGGCAAGAGCTTTTTGGTCCGGGGAGGGGTTGTTGTTATGAGCTGTCG
AAAGTGTTTAGGCAGGCGGAGGAACCATTGGTGGCGTTGCTGAACGACGT
GAGATACGGGAAGGCGTCGGCGGGGAGTCTGAGGCTGTTGAGGGAACTGG
GGAGGGAGCTTCAGCCACCGGAGGGGATAGAACCCACGTTGCTTTTTGCC
ACCAACGAGCGGGTGGATCGCATGAACCAGA

protein sequence of jgi.p|Nanoce1779_2|294977

>mRNA_2143-protein ID=mRNA_2143-protein|Name=jgi.p|Nanoce1779_2|294977|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MSSTSAGKTTPQANVASVSASASKPIAKKAGLKRALEDNREEEEKERDVT
STASLGEVSEAAAEKIKPSGELSEEQKGILRSVMEGKNVYYSGRAGSGKS
HLLRAIIERAPAGKTYVTASTGIAAINVGGTTLHSFAGIGLGDDPVEVLK
ERASKSRVAGANWQACEVLIVDEVRGREGEREGGREIGVQLYLTTTSCPT
LCCIPP*

mRNA from alignment at scaffold_4:895751..897878+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2143 ID=mRNA_2143|Name=jgi.p|Nanoce1779_2|294977|organism=Nannochloropsis oceanica|type=mRNA|length=2128bp|location=Sequence derived from alignment at scaffold_4:895751..897878+ (Nannochloropsis oceanica)
TTGCATACGTAAAGGGATTTCGTGGCTGTCATAACCAGCTGCGCCCCCAA
ACAGGATGTGGATGTCCTGCCATAGATGTGGCATGTTTTCATCAAGTACT
TCAGCGTGAGTTTGTAGGATGCAGGGTTCGCTTTTAAGGGAATGCTTGAT
GCGTTGTTCTGTAAAAGCGAAGCGAAAGTCAAATAGGAGCGGTACAAGCT
ACCAGCACCGCCCCAGGCACGCTCAAGACAAAAAGATGCTTCAATAAAAA
AACATCATGCAGGAAGATGAAGTAGGTGGTGTGAATGTGGGAAGTGAACA
CCAAAATGGTGGGTCCAACGAGGAGGACGAATAGCAGCGCCGTAGTGAAC
ACTGTTGAAGCAGCGGCGATGCTCGCCGCGTGCTTTCCACAACACGGTTT
TACGTAAGTCTCTGCTGTACGCCTGTGTTGTAAACACGACCTCGCCGCGA
ATGGCCCGTCTTTGTTCTCCCCTGCTCGGTGCTCTACACCCTGCTTAATT
TTCCTTCCCCCCCCCACCTCACATAGGCGTATTCGACGCCCGCCACAACG
GCCATGAACGGCAATTATGTCATCGACCTCAGCTGGGAAGACGACGGTAT
GTACGCTGAAGAGGAGGACGAGGAGGAGCGGTACTTGAGGGAATCCGGAT
ACTTGGACGAACCTTCTATCGCACCTTCTCCCTCCAAGCCCCAAGCAAAC
GTAGCCTCTGTCTCCGCCTCAGCCTCGAAACCAATAGCCAAGAAAGCGGG
CCTGAAACGGGCACTTGAGGACAACAGGGAAGAGGAGGAGAAAGAGAGAG
ATGTAACCTCCACCGCCTCATTGGGAGAGGTCAGTGAGGCCGCGGCGGAG
AAGATAAAGCCAAGTGGGGAACTGTCGGAGGAGCAGAAGGGCATCCTCCG
GTCCGTGATGGAGGTATGTCTTGCAGCTCGTCGCCATGATCGGTCATTGC
TTGTGGTGTTTGACCTTTTAAAAGTCAATCATGACGCTGCAGCTTCGTCG
GCCTCTTCCATTCACACACCCCACTCTCTCCCTCACTCGCCTACATACCC
CGTCTTCACAGGGCAAGAACGTGTATTACAGTGGGCGTGCCGGCTCCGGT
AAAAGTCACCTGCTACGCGCCATTATTGAACGAGCGCCAGCAGGAAAGAC
TTATGTCACGGCCTCCACGGGCATTGCTGCAATCAATGTTGGTGGTACGT
GAGTAGTCTACCACCCCTCCTTCCCTCCTTCCCTCATTCCCACCCTACCT
TTCAGTTACCACTGTCTTCTCCCAATTTGCTGGTGCTCGGCATTAAGATC
CCTTTTTAACCTTTTTTTTAAAAATTGGATTCGGATCGAATTTTCTCTTT
TTTCATCCTACCTTCCCTTTTCTTATCCTGCGTTTCCTTACTTATTCCCT
CATCTTTTTTGCGCTCTCTCCTTTGAACGAGTCTGATGCAACCTGTTTCT
CCCTCCCTCTCCCCTCCTTCCTCCCTCCAGGGACCACCCTCCATTCCTTT
GCGGGCATCGGCCTCGGCGACGATCCCGTGGAGGTTCTGAAAGAGCGCGC
CAGCAAGAGCAGGGTGGCGGGGGCGAACTGGCAAGCGTGTGAGGTGCTGA
TAGTGGACGAGGTGAGAGGGAGGGAGGGAGAAAGGGAGGGAGGGAGGGAG
ATTGGGGTGCAATTATATCTCACAACCACCTCCTGTCCTACACTGTGCTG
CATCCCTCCTTAACAGGTGAGTATGCTCCACGGCTCGCTCCTCAGCAAGC
TGGACGCCATCGCCAAGCACGTCAAAAACCAACCCTACCTCCCCTTTGGT
GGCGTGCAACTGATATTCACCGGCGACTTCTTCCAGCTCCCGCCCGTGAG
CCGGGGCCGGCAGGGTGGGGACCACGACTATGCGTTTCTGCACCCCGTGT
GGCAAGAGCTTTTTGGTCCGGGGAGGGGTTGTTGTTATGAGCTGTCGAAA
GTGTTTAGGCAGGCGGAGGAACCATTGGTGGCGTTGCTGAACGACGTGAG
ATACGGGAAGGCGTCGGCGGGGAGTCTGAGGCTGTTGAGGGAACTGGGGA
GGGAGCTTCAGCCACCGGAGGGGATAGAACCCACGTTGCTTTTTGCCACC
AACGAGCGGGTGGATCGCATGAACCAGA

Coding sequence (CDS) from alignment at scaffold_4:895751..897878+

>mRNA_2143 ID=mRNA_2143|Name=jgi.p|Nanoce1779_2|294977|organism=Nannochloropsis oceanica|type=CDS|length=2484bp|location=Sequence derived from alignment at scaffold_4:895751..897878+ (Nannochloropsis oceanica)
ATGTCATCGACCTCAGCTGGGAAGACGACGCCCCAAGCAAACGTAGCCTC
TGTCTCCGCCTCAGCCTCGAAACCAATAGCCAAGAAAGCGGGCCTGAAAC
GGGCACTTGAGGACAACAGGGAAGAGGAGGAGAAAGAGAGAGATGTAACC
TCCACCGCCTCATTGGGAGAGGTCAGTGAGGCCGCGGCGGAGAAGATAAA
GCCAAGTGGGGAACTGTCGGAGGAGCAGAAGGGCATCCTCCGGTCCGTGA
TGGAGGGCAAGAACGTGTATTACAGTGGGCGTGCCGGCTCCGGTAAAAGT
CACCTGCTACGCGCCATTATTGAACGAGCGCCAGCAGGAAAGACTTATGT
CACGGCCTCCACGGGCATTGCTGCAATCAATGTTGGTGGGACCACCCTCC
ATTCCTTTGCGGGCATCGGCCTCGGCGACGATCCCGTGGAGGTTCTGAAA
GAGCGCGCCAGCAAGAGCAGGGTGGCGGGGGCGAACTGGCAAGCGTGTGA
GGTGCTGATAGTGGACGAGGTGAGAGGGAGGGAGGGAGAAAGGGAGGGAG
GGAGGGAGATTGGGGTGCAATTATATCTCACAACCACCTCCTGTCCTACA
CTGTGCTGCATCCCTCCTTAAATGTCATCGACCTCAGCTGGGAAGACGAC
GCCCCAAGCAAACGTAGCCTCTGTCTCCGCCTCAGCCTCGAAACCAATAG
CCAAGAAAGCGGGCCTGAAACGGGCACTTGAGGACAACAGGGAAGAGGAG
GAGAAAGAGAGAGATGTAACCTCCACCGCCTCATTGGGAGAGGTCAGTGA
GGCCGCGGCGGAGAAGATAAAGCCAAGTGGGGAACTGTCGGAGGAGCAGA
AGGGCATCCTCCGGTCCGTGATGGAGGGCAAGAACGTGTATTACAGTGGG
CGTGCCGGCTCCGGTAAAAGTCACCTGCTACGCGCCATTATTGAACGAGC
GCCAGCAGGAAAGACTTATGTCACGGCCTCCACGGGCATTGCTGCAATCA
ATGTTGGTGGGACCACCCTCCATTCCTTTGCGGGCATCGGCCTCGGCGAC
GATCCCGTGGAGGTTCTGAAAGAGCGCGCCAGCAAGAGCAGGGTGGCGGG
GGCGAACTGGCAAGCGTGTGAGGTGCTGATAGTGGACGAGGTGAGAGGGA
GGGAGGGAGAAAGGGAGGGAGGGAGGGAGATTGGGGTGCAATTATATCTC
ACAACCACCTCCTGTCCTACACTGTGCTGCATCCCTCCTTAAATGTCATC
GACCTCAGCTGGGAAGACGACGCCCCAAGCAAACGTAGCCTCTGTCTCCG
CCTCAGCCTCGAAACCAATAGCCAAGAAAGCGGGCCTGAAACGGGCACTT
GAGGACAACAGGGAAGAGGAGGAGAAAGAGAGAGATGTAACCTCCACCGC
CTCATTGGGAGAGGTCAGTGAGGCCGCGGCGGAGAAGATAAAGCCAAGTG
GGGAACTGTCGGAGGAGCAGAAGGGCATCCTCCGGTCCGTGATGGAGGGC
AAGAACGTGTATTACAGTGGGCGTGCCGGCTCCGGTAAAAGTCACCTGCT
ACGCGCCATTATTGAACGAGCGCCAGCAGGAAAGACTTATGTCACGGCCT
CCACGGGCATTGCTGCAATCAATGTTGGTGGGACCACCCTCCATTCCTTT
GCGGGCATCGGCCTCGGCGACGATCCCGTGGAGGTTCTGAAAGAGCGCGC
CAGCAAGAGCAGGGTGGCGGGGGCGAACTGGCAAGCGTGTGAGGTGCTGA
TAGTGGACGAGGTGAGAGGGAGGGAGGGAGAAAGGGAGGGAGGGAGGGAG
ATTGGGGTGCAATTATATCTCACAACCACCTCCTGTCCTACACTGTGCTG
CATCCCTCCTTAAATGTCATCGACCTCAGCTGGGAAGACGACGCCCCAAG
CAAACGTAGCCTCTGTCTCCGCCTCAGCCTCGAAACCAATAGCCAAGAAA
GCGGGCCTGAAACGGGCACTTGAGGACAACAGGGAAGAGGAGGAGAAAGA
GAGAGATGTAACCTCCACCGCCTCATTGGGAGAGGTCAGTGAGGCCGCGG
CGGAGAAGATAAAGCCAAGTGGGGAACTGTCGGAGGAGCAGAAGGGCATC
CTCCGGTCCGTGATGGAGGGCAAGAACGTGTATTACAGTGGGCGTGCCGG
CTCCGGTAAAAGTCACCTGCTACGCGCCATTATTGAACGAGCGCCAGCAG
GAAAGACTTATGTCACGGCCTCCACGGGCATTGCTGCAATCAATGTTGGT
GGGACCACCCTCCATTCCTTTGCGGGCATCGGCCTCGGCGACGATCCCGT
GGAGGTTCTGAAAGAGCGCGCCAGCAAGAGCAGGGTGGCGGGGGCGAACT
GGCAAGCGTGTGAGGTGCTGATAGTGGACGAGGTGAGAGGGAGGGAGGGA
GAAAGGGAGGGAGGGAGGGAGATTGGGGTGCAATTATATCTCACAACCAC
CTCCTGTCCTACACTGTGCTGCATCCCTCCTTAA

Synonyms

Publications