jgi.p|Nanoce1779_2|579235, mRNA_2142 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579235
Unique NamemRNA_2142
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length832
Alignment locationscaffold_4:894821..895652 -

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Properties
Property NameValue
TranscriptId579321
TrackFilteredModels2
ProteinId579235
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:894821..895652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579235gene_2142Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579235mRNA_2142-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2142CDS_2142Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2142 ID=mRNA_2142|Name=jgi.p|Nanoce1779_2|579235|organism=Nannochloropsis oceanica|type=mRNA|length=832bp
CAGCATCCCCCTGTCCCTCATAGACACAGAATTACACATCAAAAAGTATG
GCCACCCTGACAGTCGCCTCCGAATACGGCTACGTTCTAATCGTCGCCGG
TGTCCTCGTCCTCGAAGGCTTCTTTCTCGGAGGCATTGTCATGGGGCTGC
GCAAACAATATTTCAGTAACGAATTCCAGAAGAAGAACCAGGACCTGATG
GATGAGCATAAGAAGGCTTTCCCCACCGTGCCCTTCTCCAGTGGCTATCC
CGACATGGGTTCTGGTCGCTACACAGATCGCTTGAGTTATGAGCAGTGGT
TCCTCTTTAACAACGCGCAGCGTGGACATCAAAACTTTTTGGAATCCGTA
TGGGCCACGATGGCGCTGCTGTTGGTCGGCGGGTTCTTCGAGCCTAAGAT
CTTCGCCAGTTTGGGGGCCGCGTATATTGTGGCGCGTGCACTCTATGCCC
ATGGCTATGCCTCGCACGGCCCTAAAGGACGGGAGGTAGGAGCAGTGGTG
GGATTGCTTTCGTTATTGGGAATGGTGGGCATGTGTATCAAGATTGCTGT
TGCCCTGATCAATGGAGGGAACTAAGGAAAGGGGGAGAAAGAGATAAAGA
GAAAGAGAGAGTGTGTGTGCGTAGGTTGAGAGAGTGTAAAAAAGTTAAGC
AGGAGGCGTAGCCTCTGCGAGTGTTGTGGAAAGACATAGCAGAAGGACGG
AGCAGAGAGAGGGTAAGAGAAAAGCATCAGCCTCAATACTTAGTGTTTTC
TGTTTCTCAAGGCGATGAGACAAGAAGACAGGAGAGTGAGGGAGAGACGA
AAATTCGACTGCTCACATCGACCACATAATAT
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protein sequence of jgi.p|Nanoce1779_2|579235

>mRNA_2142-protein ID=mRNA_2142-protein|Name=jgi.p|Nanoce1779_2|579235|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MATLTVASEYGYVLIVAGVLVLEGFFLGGIVMGLRKQYFSNEFQKKNQDL
MDEHKKAFPTVPFSSGYPDMGSGRYTDRLSYEQWFLFNNAQRGHQNFLES
VWATMALLLVGGFFEPKIFASLGAAYIVARALYAHGYASHGPKGREVGAV
VGLLSLLGMVGMCIKIAVALINGGN*
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mRNA from alignment at scaffold_4:894821..895652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2142 ID=mRNA_2142|Name=jgi.p|Nanoce1779_2|579235|organism=Nannochloropsis oceanica|type=mRNA|length=832bp|location=Sequence derived from alignment at scaffold_4:894821..895652- (Nannochloropsis oceanica)
CAGCATCCCCCTGTCCCTCATAGACACAGAATTACACATCAAAAAGTATG
GCCACCCTGACAGTCGCCTCCGAATACGGCTACGTTCTAATCGTCGCCGG
TGTCCTCGTCCTCGAAGGCTTCTTTCTCGGAGGCATTGTCATGGGGCTGC
GCAAACAATATTTCAGTAACGAATTCCAGAAGAAGAACCAGGACCTGATG
GATGAGCATAAGAAGGCTTTCCCCACCGTGCCCTTCTCCAGTGGCTATCC
CGACATGGGTTCTGGTCGCTACACAGATCGCTTGAGTTATGAGCAGTGGT
TCCTCTTTAACAACGCGCAGCGTGGACATCAAAACTTTTTGGAATCCGTA
TGGGCCACGATGGCGCTGCTGTTGGTCGGCGGGTTCTTCGAGCCTAAGAT
CTTCGCCAGTTTGGGGGCCGCGTATATTGTGGCGCGTGCACTCTATGCCC
ATGGCTATGCCTCGCACGGCCCTAAAGGACGGGAGGTAGGAGCAGTGGTG
GGATTGCTTTCGTTATTGGGAATGGTGGGCATGTGTATCAAGATTGCTGT
TGCCCTGATCAATGGAGGGAACTAAGGAAAGGGGGAGAAAGAGATAAAGA
GAAAGAGAGAGTGTGTGTGCGTAGGTTGAGAGAGTGTAAAAAAGTTAAGC
AGGAGGCGTAGCCTCTGCGAGTGTTGTGGAAAGACATAGCAGAAGGACGG
AGCAGAGAGAGGGTAAGAGAAAAGCATCAGCCTCAATACTTAGTGTTTTC
TGTTTCTCAAGGCGATGAGACAAGAAGACAGGAGAGTGAGGGAGAGACGA
AAATTCGACTGCTCACATCGACCACATAATAT
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Coding sequence (CDS) from alignment at scaffold_4:894821..895652-

>mRNA_2142 ID=mRNA_2142|Name=jgi.p|Nanoce1779_2|579235|organism=Nannochloropsis oceanica|type=CDS|length=528bp|location=Sequence derived from alignment at scaffold_4:894821..895652- (Nannochloropsis oceanica)
ATGGCCACCCTGACAGTCGCCTCCGAATACGGCTACGTTCTAATCGTCGC
CGGTGTCCTCGTCCTCGAAGGCTTCTTTCTCGGAGGCATTGTCATGGGGC
TGCGCAAACAATATTTCAGTAACGAATTCCAGAAGAAGAACCAGGACCTG
ATGGATGAGCATAAGAAGGCTTTCCCCACCGTGCCCTTCTCCAGTGGCTA
TCCCGACATGGGTTCTGGTCGCTACACAGATCGCTTGAGTTATGAGCAGT
GGTTCCTCTTTAACAACGCGCAGCGTGGACATCAAAACTTTTTGGAATCC
GTATGGGCCACGATGGCGCTGCTGTTGGTCGGCGGGTTCTTCGAGCCTAA
GATCTTCGCCAGTTTGGGGGCCGCGTATATTGTGGCGCGTGCACTCTATG
CCCATGGCTATGCCTCGCACGGCCCTAAAGGACGGGAGGTAGGAGCAGTG
GTGGGATTGCTTTCGTTATTGGGAATGGTGGGCATGTGTATCAAGATTGC
TGTTGCCCTGATCAATGGAGGGAACTAA
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Synonyms
Publications