jgi.p|Nanoce1779_2|579233, mRNA_2141 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579233
Unique Name	mRNA_2141
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1482
Alignment location	scaffold_4:892667..894148 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579319
Track	FilteredModels2
ProteinId	579233

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:892667..894148 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579233	gene_2141	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579233	mRNA_2141-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2141	CDS_2141	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:892667..894148+
coding sequence from alignment at scaffold_4:892667..894148+

mRNA sequence

>mRNA_2141 ID=mRNA_2141|Name=jgi.p|Nanoce1779_2|579233|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp
AGATACGCGAGGCGATGCTCGGGGTGGTGGTGGAGGGGGAGAGAGGAGGT
CTGTGCGGGGGGCCGGGCAAGGTGAGCCGGGAGGGTGGGATAGGAGAGGG
AACATTCCTCCGGCGGCTGTCGCGGATAGAAAAGGTGGGGGTGATTATCG
AGGGGAGAATGCCCGCGCTTCTCGCCTAGACAGGAGAGGAGGACATGCAC
CGCACTCATCGTCCATGGATGTGGAGGGATCGGAGAGAAGGGACGCACGA
GGGTTTTTGGATCACTCTGTGGGCCTTAAGGCTGGTGGGGGGGAGCGAGA
AGGGAGCACGTCGAGAAAGGACGTGGAGAGGGTGATACACAGTCTAATTG
CTGAATTCTTGGTCATCAAGGACGAGGCGGAGGTGGAGGCATCGATAGAG
CAGGTCCCCCAGGAGTTGGGGAGCGAGGTGGCCGCGAATAAGTTGCTCGG
GAAGTTGTGTGATTGCAAGGAATCGCAGCGTGGATCACTCATCCAGCTGA
TGTTGCTCCTCATCGATAAGAATCGGATTTTGAGCAAGGATTTGCGGGCG
CAGACGCAATTGGTGTTTGAAACCCTGGAGGATATCGTCGTGGATGTTCC
GCATGTCTACGAAAATTTTGCCTATGCTATGGCGGTGCTGTTGAGGACAA
ATGCGCTTGATTTTAAGTGGTTTCAGGCGGAGGCAAGAAATGCCTTGAGG
GAGGAACAACCGTTCACGCGGTTGTTGTCTGCGGTGTTCCGGGCGTATGA
TGTGGATCGACTGGCGCCGTGGTCATGCGATTTGGTGAGCAGCGCAGGGG
AGGTGTTGTTTGTTGCTTATCGAAATAAGAATATAAAGGTGTTTATGGAT
TTCGTGGAGAAGCATCAGATGTGGGCCACGTATGTCGAACCTTTGAGTGC
CAAGATCATCGAGCAGGCCCGCCTGGCGCACGGGACGGTGGGCATCTTGA
ACTGGGTCAGGTCCTTGGATCCGGGCTTGAGGAATAATGTGCCCTTCACC
CGCGCTTTGGCTTTTCGGTTGCTAGTGGAAAGCCCGAAGGTGCCCAACAC
GGTTTTGCCCCTACTGGCGGAGGTGCGGACATTGTTCACCGAGATTGCTG
CTCAGGCAGCCCCGAGGCTGCAGGTGGCTTGTTTGCACGGGATCCAGCGC
TTTGTGAATGAGTTTGCGGTGGCCATGGACAGAAAGGGGATGCTCGTGAG
CCTGTTCGATGAGCTTGTTAGATCCGGGGCTGTGTTACCTGGCGCCCTAT
CGGCCTGGGAGCAGGACTTGGCGTCCACTCCTGATAGTGCCCTCGCGCAT
GATATTGTGATTGACGTGATGAAGAAGCAGGGGGCGGACCTGGTGTCGAC
TTAATGCGACAGCAAGAGCAGCTGCACCAAGGGGTTTTGGGATTGATCAA
CACACATTGATGGGAAAACGCGCGTTGGCAGTTTTGTGTGTATTTTTGGG
TTAGTCAGGGCACGCGCGCACGTGTGGGCATG

protein sequence of jgi.p|Nanoce1779_2|579233

>mRNA_2141-protein ID=mRNA_2141-protein|Name=jgi.p|Nanoce1779_2|579233|organism=Nannochloropsis oceanica|type=polypeptide|length=380bp
MDVEGSERRDARGFLDHSVGLKAGGGEREGSTSRKDVERVIHSLIAEFLV
IKDEAEVEASIEQVPQELGSEVAANKLLGKLCDCKESQRGSLIQLMLLLI
DKNRILSKDLRAQTQLVFETLEDIVVDVPHVYENFAYAMAVLLRTNALDF
KWFQAEARNALREEQPFTRLLSAVFRAYDVDRLAPWSCDLVSSAGEVLFV
AYRNKNIKVFMDFVEKHQMWATYVEPLSAKIIEQARLAHGTVGILNWVRS
LDPGLRNNVPFTRALAFRLLVESPKVPNTVLPLLAEVRTLFTEIAAQAAP
RLQVACLHGIQRFVNEFAVAMDRKGMLVSLFDELVRSGAVLPGALSAWEQ
DLASTPDSALAHDIVIDVMKKQGADLVST*

mRNA from alignment at scaffold_4:892667..894148+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2141 ID=mRNA_2141|Name=jgi.p|Nanoce1779_2|579233|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp|location=Sequence derived from alignment at scaffold_4:892667..894148+ (Nannochloropsis oceanica)
AGATACGCGAGGCGATGCTCGGGGTGGTGGTGGAGGGGGAGAGAGGAGGT
CTGTGCGGGGGGCCGGGCAAGGTGAGCCGGGAGGGTGGGATAGGAGAGGG
AACATTCCTCCGGCGGCTGTCGCGGATAGAAAAGGTGGGGGTGATTATCG
AGGGGAGAATGCCCGCGCTTCTCGCCTAGACAGGAGAGGAGGACATGCAC
CGCACTCATCGTCCATGGATGTGGAGGGATCGGAGAGAAGGGACGCACGA
GGGTTTTTGGATCACTCTGTGGGCCTTAAGGCTGGTGGGGGGGAGCGAGA
AGGGAGCACGTCGAGAAAGGACGTGGAGAGGGTGATACACAGTCTAATTG
CTGAATTCTTGGTCATCAAGGACGAGGCGGAGGTGGAGGCATCGATAGAG
CAGGTCCCCCAGGAGTTGGGGAGCGAGGTGGCCGCGAATAAGTTGCTCGG
GAAGTTGTGTGATTGCAAGGAATCGCAGCGTGGATCACTCATCCAGCTGA
TGTTGCTCCTCATCGATAAGAATCGGATTTTGAGCAAGGATTTGCGGGCG
CAGACGCAATTGGTGTTTGAAACCCTGGAGGATATCGTCGTGGATGTTCC
GCATGTCTACGAAAATTTTGCCTATGCTATGGCGGTGCTGTTGAGGACAA
ATGCGCTTGATTTTAAGTGGTTTCAGGCGGAGGCAAGAAATGCCTTGAGG
GAGGAACAACCGTTCACGCGGTTGTTGTCTGCGGTGTTCCGGGCGTATGA
TGTGGATCGACTGGCGCCGTGGTCATGCGATTTGGTGAGCAGCGCAGGGG
AGGTGTTGTTTGTTGCTTATCGAAATAAGAATATAAAGGTGTTTATGGAT
TTCGTGGAGAAGCATCAGATGTGGGCCACGTATGTCGAACCTTTGAGTGC
CAAGATCATCGAGCAGGCCCGCCTGGCGCACGGGACGGTGGGCATCTTGA
ACTGGGTCAGGTCCTTGGATCCGGGCTTGAGGAATAATGTGCCCTTCACC
CGCGCTTTGGCTTTTCGGTTGCTAGTGGAAAGCCCGAAGGTGCCCAACAC
GGTTTTGCCCCTACTGGCGGAGGTGCGGACATTGTTCACCGAGATTGCTG
CTCAGGCAGCCCCGAGGCTGCAGGTGGCTTGTTTGCACGGGATCCAGCGC
TTTGTGAATGAGTTTGCGGTGGCCATGGACAGAAAGGGGATGCTCGTGAG
CCTGTTCGATGAGCTTGTTAGATCCGGGGCTGTGTTACCTGGCGCCCTAT
CGGCCTGGGAGCAGGACTTGGCGTCCACTCCTGATAGTGCCCTCGCGCAT
GATATTGTGATTGACGTGATGAAGAAGCAGGGGGCGGACCTGGTGTCGAC
TTAATGCGACAGCAAGAGCAGCTGCACCAAGGGGTTTTGGGATTGATCAA
CACACATTGATGGGAAAACGCGCGTTGGCAGTTTTGTGTGTATTTTTGGG
TTAGTCAGGGCACGCGCGCACGTGTGGGCATG

Coding sequence (CDS) from alignment at scaffold_4:892667..894148+

>mRNA_2141 ID=mRNA_2141|Name=jgi.p|Nanoce1779_2|579233|organism=Nannochloropsis oceanica|type=CDS|length=1140bp|location=Sequence derived from alignment at scaffold_4:892667..894148+ (Nannochloropsis oceanica)
ATGGATGTGGAGGGATCGGAGAGAAGGGACGCACGAGGGTTTTTGGATCA
CTCTGTGGGCCTTAAGGCTGGTGGGGGGGAGCGAGAAGGGAGCACGTCGA
GAAAGGACGTGGAGAGGGTGATACACAGTCTAATTGCTGAATTCTTGGTC
ATCAAGGACGAGGCGGAGGTGGAGGCATCGATAGAGCAGGTCCCCCAGGA
GTTGGGGAGCGAGGTGGCCGCGAATAAGTTGCTCGGGAAGTTGTGTGATT
GCAAGGAATCGCAGCGTGGATCACTCATCCAGCTGATGTTGCTCCTCATC
GATAAGAATCGGATTTTGAGCAAGGATTTGCGGGCGCAGACGCAATTGGT
GTTTGAAACCCTGGAGGATATCGTCGTGGATGTTCCGCATGTCTACGAAA
ATTTTGCCTATGCTATGGCGGTGCTGTTGAGGACAAATGCGCTTGATTTT
AAGTGGTTTCAGGCGGAGGCAAGAAATGCCTTGAGGGAGGAACAACCGTT
CACGCGGTTGTTGTCTGCGGTGTTCCGGGCGTATGATGTGGATCGACTGG
CGCCGTGGTCATGCGATTTGGTGAGCAGCGCAGGGGAGGTGTTGTTTGTT
GCTTATCGAAATAAGAATATAAAGGTGTTTATGGATTTCGTGGAGAAGCA
TCAGATGTGGGCCACGTATGTCGAACCTTTGAGTGCCAAGATCATCGAGC
AGGCCCGCCTGGCGCACGGGACGGTGGGCATCTTGAACTGGGTCAGGTCC
TTGGATCCGGGCTTGAGGAATAATGTGCCCTTCACCCGCGCTTTGGCTTT
TCGGTTGCTAGTGGAAAGCCCGAAGGTGCCCAACACGGTTTTGCCCCTAC
TGGCGGAGGTGCGGACATTGTTCACCGAGATTGCTGCTCAGGCAGCCCCG
AGGCTGCAGGTGGCTTGTTTGCACGGGATCCAGCGCTTTGTGAATGAGTT
TGCGGTGGCCATGGACAGAAAGGGGATGCTCGTGAGCCTGTTCGATGAGC
TTGTTAGATCCGGGGCTGTGTTACCTGGCGCCCTATCGGCCTGGGAGCAG
GACTTGGCGTCCACTCCTGATAGTGCCCTCGCGCATGATATTGTGATTGA
CGTGATGAAGAAGCAGGGGGCGGACCTGGTGTCGACTTAA

Synonyms

Publications