jgi.p|Nanoce1779_2|579232, mRNA_2140 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579232
Unique Name	mRNA_2140
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2134
Alignment location	scaffold_4:890508..892641 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579318
Track	FilteredModels2
ProteinId	579232

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:890508..892641 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579232	gene_2140	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579232	mRNA_2140-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2140	CDS_2140	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:890508..892641+
coding sequence from alignment at scaffold_4:890508..892641+

mRNA sequence

>mRNA_2140 ID=mRNA_2140|Name=jgi.p|Nanoce1779_2|579232|organism=Nannochloropsis oceanica|type=mRNA|length=2134bp
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGTAAATCAGCGAAGGC
GGAAGTATCAGTATCCCTACCAGTGGCAGCAGCAGAAGCAGCATCGCCTG
TTGTAGCTGAGAAGCAAGAAGAGGATGTGGTGACGGCTGCTCTGAGCGAT
AAAGTGACGGGCATGTCTATCGCAGCTCAGGAACCTTCTGCCCCGAAGGC
AGGTGTTGAAATCCCTCCAGCTGCCATAACTGCCGCCACTTTTACTCCCG
CTGCATCTGCTGCAGGAAAGGTGGTGTATGGAAAGGTGGATTTGGAGCGT
CTCAAGCCTAGTATGCTCTCTGAGCCTGCTGAGCTTGTGGGTAAACTTCT
AGTAAGCAAGCCCCCAGGCTTGTCGAGTAATGCAGGAGGAGGAATGGGGG
GAGGGATGGGAGGTGGAAGGCCGTCGCTCGGGGGCTTGGGAGGGTCCATA
AGTAGGAGTGGGTCGTCGGTTAGCACTCTAGAGGAAGGTCCTTGGCAGCG
AAAGCCGTTGCTGATGGAGGCAAGAAAGAGTACCGACCAGCTCAGTGCCT
CTTCTCGTGGGACAGCTGCTGGTGGTGGCGTTAGTCCAGGTGTGTCGTCG
TCGGGAAGCAGTGCTACCGCTGGTGGTGGAGGGAGTGCCTGGCGACGGGG
GGAGCAGTTGCCAAAGAAGGAGGGCGGTGGTGGAGGAGGAGAATATGGCC
GGCAAGGGGTTGGTTCGGACTTTGCGCGGAAGAGAGAGAACATGGGGTTG
GCGAGGGCTAAGAATGCATGGAGTCCGCAGAGGGACACGTCGGGATTGGA
GCAGTGCGAGGCCCGGGTGCGGGGCCTGTTGAATAAAATGACATGGGACA
CGTTTGAGAAGTTGTCGACGCAGCTGTGTTCGATCGAGCTGGATTCGAAG
GACATGTTGAGCAAAATCATCTCGTTGGTGTTTGACAAGGCGGTGGATGA
ACCGTCATTTGGAGAGATGTACGCAACGTTGTGCGTGCATGTGAGCAAGA
AATCCGGGGAATGGTCCGTGATCCGCACAGGGCAGGATTTGGATAAAGGA
GGGAAGTACTTTTGGACGGACGATATCATGGTAGAGAAAGAGATAGTGGG
ACCTTTTCCTTCGAGGGAGGCGTGTTTGGAGGCGGCGGTAAGCGAGCAGG
AACCGGCGGCGCAGGCCCGGACGCAGAAGTTGCGGTTGTCGGAGCTGGTA
ATCACCGGGGATAAATTTGTGAAGGTCTTGGAGAGCATGGAGGGAGCGGC
TCCTCAATTCTTTACGGTGTTCAGGTCCTTGGCAGAAGAGGAGGAGGGGC
AGGAGAAGGTGAGGGATCGGATCCACGGCGGGTTTGAGGATGAGATGAGC
GCAATGGAGGACGGGCATAGGGCGACGACATTCAAGAAACTCCTTTTGAA
GAAGTGCCAGGAGGAATTTTATAAGGAAAATATCTATGATGATGTTGTCA
AGTCCTCTGCAGGCTCAGGAATATCAAAGCAGGAACTGGCGCAGAATCGC
GCAGATGAGGAGGAGGGAAGGATGAAGGCCAAGAGGCGCATGCTGGGGAA
TATCCGTTTCATTGGTGAGTTATACAAGAAGAAAATGCTCAAGGAGCACA
TCATGCATGAGTGTATTTTGAAGCTGTTAGGATTCGTCGAGCAACGGGGT
GATCGGCCTAGCGACCGCAAGCTTGTTAAGAGCGCCGCGACGTGGGACGA
GGAGAGCCTTGAGGCTTTATGCAAGCTCTTGACGACTGTTGGAAAGCAGC
TGGATGACGTGAAGGGTGGAGGGAAGGGGGAGCAGAGGGCTAAGGGAAGG
CCACCCCCTGAACACCACGAGAAGGATATCGCATTTTATTACAAGCAGTT
GAAGGACTTGAGCACTGATAAAAAGTCAGGGTTACCGGCACGGGCGCGCT
TCATGATCAAGGACCTGTTGGAGCTCAGAGAGAACGATTGGGTGCCTAGG
CGAATCGAAGCCAAGGCGACTAAGACCGACGAATTCAGAAGAGAAATCGA
GGCGGTCAAGCCTGTCGCGGGGGGACTTCCTGGAGGAGGTGGAAGAGGGG
GAGGCCAAGGTGGTGGAGGTGGAGGAGGAGGTGGTGGAACAAGGGGGTCG
GTCCAGACGCCGACTTCGGTGTCAAGGCAAGTGT

protein sequence of jgi.p|Nanoce1779_2|579232

>mRNA_2140-protein ID=mRNA_2140-protein|Name=jgi.p|Nanoce1779_2|579232|organism=Nannochloropsis oceanica|type=polypeptide|length=657bp
MSIAAQEPSAPKAGVEIPPAAITAATFTPAASAAGKVVYGKVDLERLKPS
MLSEPAELVGKLLVSKPPGLSSNAGGGMGGGMGGGRPSLGGLGGSISRSG
SSVSTLEEGPWQRKPLLMEARKSTDQLSASSRGTAAGGGVSPGVSSSGSS
ATAGGGGSAWRRGEQLPKKEGGGGGGEYGRQGVGSDFARKRENMGLARAK
NAWSPQRDTSGLEQCEARVRGLLNKMTWDTFEKLSTQLCSIELDSKDMLS
KIISLVFDKAVDEPSFGEMYATLCVHVSKKSGEWSVIRTGQDLDKGGKYF
WTDDIMVEKEIVGPFPSREACLEAAVSEQEPAAQARTQKLRLSELVITGD
KFVKVLESMEGAAPQFFTVFRSLAEEEEGQEKVRDRIHGGFEDEMSAMED
GHRATTFKKLLLKKCQEEFYKENIYDDVVKSSAGSGISKQELAQNRADEE
EGRMKAKRRMLGNIRFIGELYKKKMLKEHIMHECILKLLGFVEQRGDRPS
DRKLVKSAATWDEESLEALCKLLTTVGKQLDDVKGGGKGEQRAKGRPPPE
HHEKDIAFYYKQLKDLSTDKKSGLPARARFMIKDLLELRENDWVPRRIEA
KATKTDEFRREIEAVKPVAGGLPGGGGRGGGQGGGGGGGGGGTRGSVQTP
TSVSRQV

mRNA from alignment at scaffold_4:890508..892641+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2140 ID=mRNA_2140|Name=jgi.p|Nanoce1779_2|579232|organism=Nannochloropsis oceanica|type=mRNA|length=2134bp|location=Sequence derived from alignment at scaffold_4:890508..892641+ (Nannochloropsis oceanica)
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGTAAATCAGCGAAGGC
GGAAGTATCAGTATCCCTACCAGTGGCAGCAGCAGAAGCAGCATCGCCTG
TTGTAGCTGAGAAGCAAGAAGAGGATGTGGTGACGGCTGCTCTGAGCGAT
AAAGTGACGGGCATGTCTATCGCAGCTCAGGAACCTTCTGCCCCGAAGGC
AGGTGTTGAAATCCCTCCAGCTGCCATAACTGCCGCCACTTTTACTCCCG
CTGCATCTGCTGCAGGAAAGGTGGTGTATGGAAAGGTGGATTTGGAGCGT
CTCAAGCCTAGTATGCTCTCTGAGCCTGCTGAGCTTGTGGGTAAACTTCT
AGTAAGCAAGCCCCCAGGCTTGTCGAGTAATGCAGGAGGAGGAATGGGGG
GAGGGATGGGAGGTGGAAGGCCGTCGCTCGGGGGCTTGGGAGGGTCCATA
AGTAGGAGTGGGTCGTCGGTTAGCACTCTAGAGGAAGGTCCTTGGCAGCG
AAAGCCGTTGCTGATGGAGGCAAGAAAGAGTACCGACCAGCTCAGTGCCT
CTTCTCGTGGGACAGCTGCTGGTGGTGGCGTTAGTCCAGGTGTGTCGTCG
TCGGGAAGCAGTGCTACCGCTGGTGGTGGAGGGAGTGCCTGGCGACGGGG
GGAGCAGTTGCCAAAGAAGGAGGGCGGTGGTGGAGGAGGAGAATATGGCC
GGCAAGGGGTTGGTTCGGACTTTGCGCGGAAGAGAGAGAACATGGGGTTG
GCGAGGGCTAAGAATGCATGGAGTCCGCAGAGGGACACGTCGGGATTGGA
GCAGTGCGAGGCCCGGGTGCGGGGCCTGTTGAATAAAATGACATGGGACA
CGTTTGAGAAGTTGTCGACGCAGCTGTGTTCGATCGAGCTGGATTCGAAG
GACATGTTGAGCAAAATCATCTCGTTGGTGTTTGACAAGGCGGTGGATGA
ACCGTCATTTGGAGAGATGTACGCAACGTTGTGCGTGCATGTGAGCAAGA
AATCCGGGGAATGGTCCGTGATCCGCACAGGGCAGGATTTGGATAAAGGA
GGGAAGTACTTTTGGACGGACGATATCATGGTAGAGAAAGAGATAGTGGG
ACCTTTTCCTTCGAGGGAGGCGTGTTTGGAGGCGGCGGTAAGCGAGCAGG
AACCGGCGGCGCAGGCCCGGACGCAGAAGTTGCGGTTGTCGGAGCTGGTA
ATCACCGGGGATAAATTTGTGAAGGTCTTGGAGAGCATGGAGGGAGCGGC
TCCTCAATTCTTTACGGTGTTCAGGTCCTTGGCAGAAGAGGAGGAGGGGC
AGGAGAAGGTGAGGGATCGGATCCACGGCGGGTTTGAGGATGAGATGAGC
GCAATGGAGGACGGGCATAGGGCGACGACATTCAAGAAACTCCTTTTGAA
GAAGTGCCAGGAGGAATTTTATAAGGAAAATATCTATGATGATGTTGTCA
AGTCCTCTGCAGGCTCAGGAATATCAAAGCAGGAACTGGCGCAGAATCGC
GCAGATGAGGAGGAGGGAAGGATGAAGGCCAAGAGGCGCATGCTGGGGAA
TATCCGTTTCATTGGTGAGTTATACAAGAAGAAAATGCTCAAGGAGCACA
TCATGCATGAGTGTATTTTGAAGCTGTTAGGATTCGTCGAGCAACGGGGT
GATCGGCCTAGCGACCGCAAGCTTGTTAAGAGCGCCGCGACGTGGGACGA
GGAGAGCCTTGAGGCTTTATGCAAGCTCTTGACGACTGTTGGAAAGCAGC
TGGATGACGTGAAGGGTGGAGGGAAGGGGGAGCAGAGGGCTAAGGGAAGG
CCACCCCCTGAACACCACGAGAAGGATATCGCATTTTATTACAAGCAGTT
GAAGGACTTGAGCACTGATAAAAAGTCAGGGTTACCGGCACGGGCGCGCT
TCATGATCAAGGACCTGTTGGAGCTCAGAGAGAACGATTGGGTGCCTAGG
CGAATCGAAGCCAAGGCGACTAAGACCGACGAATTCAGAAGAGAAATCGA
GGCGGTCAAGCCTGTCGCGGGGGGACTTCCTGGAGGAGGTGGAAGAGGGG
GAGGCCAAGGTGGTGGAGGTGGAGGAGGAGGTGGTGGAACAAGGGGGTCG
GTCCAGACGCCGACTTCGGTGTCAAGGCAAGTGT

Coding sequence (CDS) from alignment at scaffold_4:890508..892641+

>mRNA_2140 ID=mRNA_2140|Name=jgi.p|Nanoce1779_2|579232|organism=Nannochloropsis oceanica|type=CDS|length=1971bp|location=Sequence derived from alignment at scaffold_4:890508..892641+ (Nannochloropsis oceanica)
ATGTCTATCGCAGCTCAGGAACCTTCTGCCCCGAAGGCAGGTGTTGAAAT
CCCTCCAGCTGCCATAACTGCCGCCACTTTTACTCCCGCTGCATCTGCTG
CAGGAAAGGTGGTGTATGGAAAGGTGGATTTGGAGCGTCTCAAGCCTAGT
ATGCTCTCTGAGCCTGCTGAGCTTGTGGGTAAACTTCTAGTAAGCAAGCC
CCCAGGCTTGTCGAGTAATGCAGGAGGAGGAATGGGGGGAGGGATGGGAG
GTGGAAGGCCGTCGCTCGGGGGCTTGGGAGGGTCCATAAGTAGGAGTGGG
TCGTCGGTTAGCACTCTAGAGGAAGGTCCTTGGCAGCGAAAGCCGTTGCT
GATGGAGGCAAGAAAGAGTACCGACCAGCTCAGTGCCTCTTCTCGTGGGA
CAGCTGCTGGTGGTGGCGTTAGTCCAGGTGTGTCGTCGTCGGGAAGCAGT
GCTACCGCTGGTGGTGGAGGGAGTGCCTGGCGACGGGGGGAGCAGTTGCC
AAAGAAGGAGGGCGGTGGTGGAGGAGGAGAATATGGCCGGCAAGGGGTTG
GTTCGGACTTTGCGCGGAAGAGAGAGAACATGGGGTTGGCGAGGGCTAAG
AATGCATGGAGTCCGCAGAGGGACACGTCGGGATTGGAGCAGTGCGAGGC
CCGGGTGCGGGGCCTGTTGAATAAAATGACATGGGACACGTTTGAGAAGT
TGTCGACGCAGCTGTGTTCGATCGAGCTGGATTCGAAGGACATGTTGAGC
AAAATCATCTCGTTGGTGTTTGACAAGGCGGTGGATGAACCGTCATTTGG
AGAGATGTACGCAACGTTGTGCGTGCATGTGAGCAAGAAATCCGGGGAAT
GGTCCGTGATCCGCACAGGGCAGGATTTGGATAAAGGAGGGAAGTACTTT
TGGACGGACGATATCATGGTAGAGAAAGAGATAGTGGGACCTTTTCCTTC
GAGGGAGGCGTGTTTGGAGGCGGCGGTAAGCGAGCAGGAACCGGCGGCGC
AGGCCCGGACGCAGAAGTTGCGGTTGTCGGAGCTGGTAATCACCGGGGAT
AAATTTGTGAAGGTCTTGGAGAGCATGGAGGGAGCGGCTCCTCAATTCTT
TACGGTGTTCAGGTCCTTGGCAGAAGAGGAGGAGGGGCAGGAGAAGGTGA
GGGATCGGATCCACGGCGGGTTTGAGGATGAGATGAGCGCAATGGAGGAC
GGGCATAGGGCGACGACATTCAAGAAACTCCTTTTGAAGAAGTGCCAGGA
GGAATTTTATAAGGAAAATATCTATGATGATGTTGTCAAGTCCTCTGCAG
GCTCAGGAATATCAAAGCAGGAACTGGCGCAGAATCGCGCAGATGAGGAG
GAGGGAAGGATGAAGGCCAAGAGGCGCATGCTGGGGAATATCCGTTTCAT
TGGTGAGTTATACAAGAAGAAAATGCTCAAGGAGCACATCATGCATGAGT
GTATTTTGAAGCTGTTAGGATTCGTCGAGCAACGGGGTGATCGGCCTAGC
GACCGCAAGCTTGTTAAGAGCGCCGCGACGTGGGACGAGGAGAGCCTTGA
GGCTTTATGCAAGCTCTTGACGACTGTTGGAAAGCAGCTGGATGACGTGA
AGGGTGGAGGGAAGGGGGAGCAGAGGGCTAAGGGAAGGCCACCCCCTGAA
CACCACGAGAAGGATATCGCATTTTATTACAAGCAGTTGAAGGACTTGAG
CACTGATAAAAAGTCAGGGTTACCGGCACGGGCGCGCTTCATGATCAAGG
ACCTGTTGGAGCTCAGAGAGAACGATTGGGTGCCTAGGCGAATCGAAGCC
AAGGCGACTAAGACCGACGAATTCAGAAGAGAAATCGAGGCGGTCAAGCC
TGTCGCGGGGGGACTTCCTGGAGGAGGTGGAAGAGGGGGAGGCCAAGGTG
GTGGAGGTGGAGGAGGAGGTGGTGGAACAAGGGGGTCGGTCCAGACGCCG
ACTTCGGTGTCAAGGCAAGTG

Synonyms

Publications