jgi.p|Nanoce1779_2|576576, mRNA_214 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576576
Unique Name	mRNA_214
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2190
Alignment location	scaffold_3:539173..541362 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576662
Track	FilteredModels2
ProteinId	576576

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:539173..541362 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576576	gene_214	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576576	mRNA_214-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_214	CDS_214	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:539173..541362+
coding sequence from alignment at scaffold_3:539173..541362+

mRNA sequence

>mRNA_214 ID=mRNA_214|Name=jgi.p|Nanoce1779_2|576576|organism=Nannochloropsis oceanica|type=mRNA|length=2190bp
GCATTACGCTAGGCCTTCTGGGCCGCGTACCGCCGTTGTGACGAGCGAGC
TGCAACATCATCAAGTTTCACGAGCGATAAGTAAAGTAATCCACCTATCA
ACCTCCGCACGAACCGAGCTCACCTTCGCGTTTCACACAAAAGGGACATA
GCGCCCTCTAGGCTCAATCCTGAACGTGTCCGGAGTCGGGACTTCAGTTC
CCAAGTCTCCCAAGCAAACAGACATCTCTGCTTGTCTTGCTCTTACTATG
GTACACGAATCTGTATTCGTGAGCATTCGACCGATGCAGCAGGCACGACG
GCACTTCCTGGTGGCATTGCTGCTAGTCATCGTAGAAGCCCAGCAAGAGC
AGCCCCCGTCGACGCCTTTCCAGCCCAACATGCCTCCGCCGCCCCCTCCT
CTAGCTCCTCCATTTCCATCCCCGGCACCCCCGCCTTCCTCCACTCAAGT
CGGTACAACCAAGCCGACAACAATGAAGATTACCTGGCCGACGCAGCACG
GACTGATCATTGACGCTGGCAGCACAGGGAGCCGCATGCACGTATATCAA
TGGGATGCCCGGCGCTTTGAAACCGTGCCCCCTCCATTTAGCTATCCTCT
CACCAGCAACAGATGGACGGATCGGCTCGCCCCCGGCATCTCCGCGTTTG
CCGACAGCCCCGAGGACGTGGGTTCGTCTTTGGACCCGCTTATATCCTTT
GCCAAAGATGTCCTGGCGGGGAAGGAGCATCAGTTCCAGTATTTCCCCAT
TTATCTCAAGGCGACGGGGGGCATGCGTCAATTACCTACCAAGCAGCGAG
AGGCCATCGTTTCGGAAGTCCGGCGATACATGATGAACGAAACGCTGTGT
CCCTTCTACTTCGAACACGACTTTGCCCGTGTTGTGTCGGGGGAGGAAGA
AGGCGTTTACGGATGGACAGCCATCAACTTTCTGTTGGGGAAGCTGCTGC
CGGCAAGTACGGGAACGGGAACGGCTGACGCCAACTCGTCCGTGGGTGCA
CTAGATCTGGGAGGCGCCTCCACGCAGATTTCGTTTTTTGTACCTAATCA
GGATATCCTGGCGAACATGTTCAAGCTGCAGATTGGCGCCCAGAAGCATT
GGAACGTCTATGTTCACTCCTTCCTGTACTTCGGGATCAACTCGGCCCGG
GACAGGCTGCACACCACCTTGACGGACGCGGCAGACGCCAACAAGGACAA
GACGAAGAAGAGTGAGAAGGGCAGCAGCAGCAATGGTAGCATATATAGCA
ACAAGATGGTGCCTGTGGGGTCCCTGAGGGTTACAAACCCGTGCTTGCCT
GATGGGTACGAGGAGGTGTTCAGGGACAGAGGGAAAAACTATGTCGTAGA
GGGGACGGCCGGCTCCTTCAGTAGCTGCATGACGCAGGTGGTGCCGCTCC
TGCGAAAGGATCTTAATTCTTGGTGTGACTTTGCTCACAACAATCAATGC
TCGTTTGCTGGGGTGTACCAACCCGATCTTCCCCCCGCACCTGGAAATTT
CGGAGAGTTTTACGGGTTCGGCACCTTTAAAGATATTTGGAAGATGCTGG
ACATGCCGGACGTCAAGGCCAACATGACAGTGTACAAGGAGCGGACCGAG
AGTTTGTGTGCCATGGATTGGCGGCAGCTGCAGCATATGAACCAGAAGAA
GAAGAAGAAGAAGCGGGAGCAGAGCTTGCCCTTCTTAGCGCATTACTGCT
TCGTGGCCGCGTTTGGGTACGCGCTGCTCACGGAGGGTTATGGTTTTGAG
GCATCGCGGAACCTGACAGTGGTGAACAAGATTGACGGGCTCAAGGTAAC
GTGGGCGCTTGGGGCCATGCTGTATGAGATCAACGCTTTACCGTGGGAGT
ATGTCAAACCCCAGACGTGGGTTACAGCGTTTATTGGGTCCTTCCTCCTC
AATATCCTTCTTTTTGCGGGCGTGATTTTTTTTCTCCGCAAGAGCCATTT
GAGCGCCGCTGCAATCATCAATCGCAAGCGGGACATTTCGTCGTCGGTCT
CGGGATTTTCCATCGATCGCTCTGCCAATGGGAGGCCACAGCACAGCAGA
AGACAAAGCTATCAGAGCATACCCACCAGCGCCGTCGTTTAAGGATTTGT
GGGAGGTCGAACCAAATGAAAGATGCAGATCTCAGGGAAGAGGAATTAAC
AATAAATTTACAAAAAAGTAAATAAAATTGCATTTGGATA

protein sequence of jgi.p|Nanoce1779_2|576576

>mRNA_214-protein ID=mRNA_214-protein|Name=jgi.p|Nanoce1779_2|576576|organism=Nannochloropsis oceanica|type=polypeptide|length=615bp
MVHESVFVSIRPMQQARRHFLVALLLVIVEAQQEQPPSTPFQPNMPPPPP
PLAPPFPSPAPPPSSTQVGTTKPTTMKITWPTQHGLIIDAGSTGSRMHVY
QWDARRFETVPPPFSYPLTSNRWTDRLAPGISAFADSPEDVGSSLDPLIS
FAKDVLAGKEHQFQYFPIYLKATGGMRQLPTKQREAIVSEVRRYMMNETL
CPFYFEHDFARVVSGEEEGVYGWTAINFLLGKLLPASTGTGTADANSSVG
ALDLGGASTQISFFVPNQDILANMFKLQIGAQKHWNVYVHSFLYFGINSA
RDRLHTTLTDAADANKDKTKKSEKGSSSNGSIYSNKMVPVGSLRVTNPCL
PDGYEEVFRDRGKNYVVEGTAGSFSSCMTQVVPLLRKDLNSWCDFAHNNQ
CSFAGVYQPDLPPAPGNFGEFYGFGTFKDIWKMLDMPDVKANMTVYKERT
ESLCAMDWRQLQHMNQKKKKKKREQSLPFLAHYCFVAAFGYALLTEGYGF
EASRNLTVVNKIDGLKVTWALGAMLYEINALPWEYVKPQTWVTAFIGSFL
LNILLFAGVIFFLRKSHLSAAAIINRKRDISSSVSGFSIDRSANGRPQHS
RRQSYQSIPTSAVV*

mRNA from alignment at scaffold_3:539173..541362+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_214 ID=mRNA_214|Name=jgi.p|Nanoce1779_2|576576|organism=Nannochloropsis oceanica|type=mRNA|length=2190bp|location=Sequence derived from alignment at scaffold_3:539173..541362+ (Nannochloropsis oceanica)
GCATTACGCTAGGCCTTCTGGGCCGCGTACCGCCGTTGTGACGAGCGAGC
TGCAACATCATCAAGTTTCACGAGCGATAAGTAAAGTAATCCACCTATCA
ACCTCCGCACGAACCGAGCTCACCTTCGCGTTTCACACAAAAGGGACATA
GCGCCCTCTAGGCTCAATCCTGAACGTGTCCGGAGTCGGGACTTCAGTTC
CCAAGTCTCCCAAGCAAACAGACATCTCTGCTTGTCTTGCTCTTACTATG
GTACACGAATCTGTATTCGTGAGCATTCGACCGATGCAGCAGGCACGACG
GCACTTCCTGGTGGCATTGCTGCTAGTCATCGTAGAAGCCCAGCAAGAGC
AGCCCCCGTCGACGCCTTTCCAGCCCAACATGCCTCCGCCGCCCCCTCCT
CTAGCTCCTCCATTTCCATCCCCGGCACCCCCGCCTTCCTCCACTCAAGT
CGGTACAACCAAGCCGACAACAATGAAGATTACCTGGCCGACGCAGCACG
GACTGATCATTGACGCTGGCAGCACAGGGAGCCGCATGCACGTATATCAA
TGGGATGCCCGGCGCTTTGAAACCGTGCCCCCTCCATTTAGCTATCCTCT
CACCAGCAACAGATGGACGGATCGGCTCGCCCCCGGCATCTCCGCGTTTG
CCGACAGCCCCGAGGACGTGGGTTCGTCTTTGGACCCGCTTATATCCTTT
GCCAAAGATGTCCTGGCGGGGAAGGAGCATCAGTTCCAGTATTTCCCCAT
TTATCTCAAGGCGACGGGGGGCATGCGTCAATTACCTACCAAGCAGCGAG
AGGCCATCGTTTCGGAAGTCCGGCGATACATGATGAACGAAACGCTGTGT
CCCTTCTACTTCGAACACGACTTTGCCCGTGTTGTGTCGGGGGAGGAAGA
AGGCGTTTACGGATGGACAGCCATCAACTTTCTGTTGGGGAAGCTGCTGC
CGGCAAGTACGGGAACGGGAACGGCTGACGCCAACTCGTCCGTGGGTGCA
CTAGATCTGGGAGGCGCCTCCACGCAGATTTCGTTTTTTGTACCTAATCA
GGATATCCTGGCGAACATGTTCAAGCTGCAGATTGGCGCCCAGAAGCATT
GGAACGTCTATGTTCACTCCTTCCTGTACTTCGGGATCAACTCGGCCCGG
GACAGGCTGCACACCACCTTGACGGACGCGGCAGACGCCAACAAGGACAA
GACGAAGAAGAGTGAGAAGGGCAGCAGCAGCAATGGTAGCATATATAGCA
ACAAGATGGTGCCTGTGGGGTCCCTGAGGGTTACAAACCCGTGCTTGCCT
GATGGGTACGAGGAGGTGTTCAGGGACAGAGGGAAAAACTATGTCGTAGA
GGGGACGGCCGGCTCCTTCAGTAGCTGCATGACGCAGGTGGTGCCGCTCC
TGCGAAAGGATCTTAATTCTTGGTGTGACTTTGCTCACAACAATCAATGC
TCGTTTGCTGGGGTGTACCAACCCGATCTTCCCCCCGCACCTGGAAATTT
CGGAGAGTTTTACGGGTTCGGCACCTTTAAAGATATTTGGAAGATGCTGG
ACATGCCGGACGTCAAGGCCAACATGACAGTGTACAAGGAGCGGACCGAG
AGTTTGTGTGCCATGGATTGGCGGCAGCTGCAGCATATGAACCAGAAGAA
GAAGAAGAAGAAGCGGGAGCAGAGCTTGCCCTTCTTAGCGCATTACTGCT
TCGTGGCCGCGTTTGGGTACGCGCTGCTCACGGAGGGTTATGGTTTTGAG
GCATCGCGGAACCTGACAGTGGTGAACAAGATTGACGGGCTCAAGGTAAC
GTGGGCGCTTGGGGCCATGCTGTATGAGATCAACGCTTTACCGTGGGAGT
ATGTCAAACCCCAGACGTGGGTTACAGCGTTTATTGGGTCCTTCCTCCTC
AATATCCTTCTTTTTGCGGGCGTGATTTTTTTTCTCCGCAAGAGCCATTT
GAGCGCCGCTGCAATCATCAATCGCAAGCGGGACATTTCGTCGTCGGTCT
CGGGATTTTCCATCGATCGCTCTGCCAATGGGAGGCCACAGCACAGCAGA
AGACAAAGCTATCAGAGCATACCCACCAGCGCCGTCGTTTAAGGATTTGT
GGGAGGTCGAACCAAATGAAAGATGCAGATCTCAGGGAAGAGGAATTAAC
AATAAATTTACAAAAAAGTAAATAAAATTGCATTTGGATA

Coding sequence (CDS) from alignment at scaffold_3:539173..541362+

>mRNA_214 ID=mRNA_214|Name=jgi.p|Nanoce1779_2|576576|organism=Nannochloropsis oceanica|type=CDS|length=1845bp|location=Sequence derived from alignment at scaffold_3:539173..541362+ (Nannochloropsis oceanica)
ATGGTACACGAATCTGTATTCGTGAGCATTCGACCGATGCAGCAGGCACG
ACGGCACTTCCTGGTGGCATTGCTGCTAGTCATCGTAGAAGCCCAGCAAG
AGCAGCCCCCGTCGACGCCTTTCCAGCCCAACATGCCTCCGCCGCCCCCT
CCTCTAGCTCCTCCATTTCCATCCCCGGCACCCCCGCCTTCCTCCACTCA
AGTCGGTACAACCAAGCCGACAACAATGAAGATTACCTGGCCGACGCAGC
ACGGACTGATCATTGACGCTGGCAGCACAGGGAGCCGCATGCACGTATAT
CAATGGGATGCCCGGCGCTTTGAAACCGTGCCCCCTCCATTTAGCTATCC
TCTCACCAGCAACAGATGGACGGATCGGCTCGCCCCCGGCATCTCCGCGT
TTGCCGACAGCCCCGAGGACGTGGGTTCGTCTTTGGACCCGCTTATATCC
TTTGCCAAAGATGTCCTGGCGGGGAAGGAGCATCAGTTCCAGTATTTCCC
CATTTATCTCAAGGCGACGGGGGGCATGCGTCAATTACCTACCAAGCAGC
GAGAGGCCATCGTTTCGGAAGTCCGGCGATACATGATGAACGAAACGCTG
TGTCCCTTCTACTTCGAACACGACTTTGCCCGTGTTGTGTCGGGGGAGGA
AGAAGGCGTTTACGGATGGACAGCCATCAACTTTCTGTTGGGGAAGCTGC
TGCCGGCAAGTACGGGAACGGGAACGGCTGACGCCAACTCGTCCGTGGGT
GCACTAGATCTGGGAGGCGCCTCCACGCAGATTTCGTTTTTTGTACCTAA
TCAGGATATCCTGGCGAACATGTTCAAGCTGCAGATTGGCGCCCAGAAGC
ATTGGAACGTCTATGTTCACTCCTTCCTGTACTTCGGGATCAACTCGGCC
CGGGACAGGCTGCACACCACCTTGACGGACGCGGCAGACGCCAACAAGGA
CAAGACGAAGAAGAGTGAGAAGGGCAGCAGCAGCAATGGTAGCATATATA
GCAACAAGATGGTGCCTGTGGGGTCCCTGAGGGTTACAAACCCGTGCTTG
CCTGATGGGTACGAGGAGGTGTTCAGGGACAGAGGGAAAAACTATGTCGT
AGAGGGGACGGCCGGCTCCTTCAGTAGCTGCATGACGCAGGTGGTGCCGC
TCCTGCGAAAGGATCTTAATTCTTGGTGTGACTTTGCTCACAACAATCAA
TGCTCGTTTGCTGGGGTGTACCAACCCGATCTTCCCCCCGCACCTGGAAA
TTTCGGAGAGTTTTACGGGTTCGGCACCTTTAAAGATATTTGGAAGATGC
TGGACATGCCGGACGTCAAGGCCAACATGACAGTGTACAAGGAGCGGACC
GAGAGTTTGTGTGCCATGGATTGGCGGCAGCTGCAGCATATGAACCAGAA
GAAGAAGAAGAAGAAGCGGGAGCAGAGCTTGCCCTTCTTAGCGCATTACT
GCTTCGTGGCCGCGTTTGGGTACGCGCTGCTCACGGAGGGTTATGGTTTT
GAGGCATCGCGGAACCTGACAGTGGTGAACAAGATTGACGGGCTCAAGGT
AACGTGGGCGCTTGGGGCCATGCTGTATGAGATCAACGCTTTACCGTGGG
AGTATGTCAAACCCCAGACGTGGGTTACAGCGTTTATTGGGTCCTTCCTC
CTCAATATCCTTCTTTTTGCGGGCGTGATTTTTTTTCTCCGCAAGAGCCA
TTTGAGCGCCGCTGCAATCATCAATCGCAAGCGGGACATTTCGTCGTCGG
TCTCGGGATTTTCCATCGATCGCTCTGCCAATGGGAGGCCACAGCACAGC
AGAAGACAAAGCTATCAGAGCATACCCACCAGCGCCGTCGTTTAA

Synonyms

Publications