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Properties
| Property Name | Value |
|---|
| TranscriptId | 579312 |
| Track | FilteredModels2 |
| ProteinId | 579226 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:885546..886882 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2138 ID=mRNA_2138|Name=jgi.p|Nanoce1779_2|579226|organism=Nannochloropsis oceanica|type=mRNA|length=1337bp
AGGTCATTAAATCGAATGGTACGGGCGCACCTGGCCGTCTCGGAGAGTCT
TCTCGACGTCTTCCAGCAGCCGGAGTCTGCCCGCCTTCTCCGCATCAACA
TCAAAGGCGAGGCTCTGGAGCTGGCAGCCCCTCCCCTATGGAAGCAGGCA
GATGAGGAGGCAGATTTTCATGCAATGGTGGTGGAGGGTGTGCTCCGAGC
TTCCCCCATCCCATCCTCTTCCTTGCTGATATTTACACTCGATGACGGCA
CGCGGGTGCTCATCAAATACCTGGGCCTCTCCTGTCCCGTGCGCGAAAAA
ATGCTCTACTCCTCCTCAATTACGGACCTGAAGAGGGGCTGTGCTGCCAA
CCTTTCCCTCTTTGAAGCGCACGAACGGGAAGATGTGACTTTCTCCGGCC
TGCTGGATGCTCTCGGTAAGCGACGGAAAGCACCAGCAGGTGGAGTGGCT
ACCATGATGGCGTCATCCCAGCAGCAGTCACAGCAGTCTGCACCTCATCC
ACTCACGAAATTGGAGGAGCTAACCCTGGCAGAAAGGGGGACGGAGAAGA
ACGCGGCCGTGCGGCTTCATGGCATGAGCCGCTCGTCTCTCGAAATACAT
CCCGACGCGAGGGCAGCGCTTGCGAAAGTCCGAGCGGCGGGCGAGCCGGG
AAACTGGTTAGCATTGGCCTTGGTTGAGGAAACAGTGGTGGTTGCCGCCC
TTCTTTCGGTGTCTTTTCCATCAATCAATGACAATGTATTTAGGAATGAA
GGGATCTTGTCCTCTACGCTGCCCACAGACGAACCAAGGTTTATAATCGT
GGCCCAGCAACCACAGCATGTCTTCATTTACTACTGCCCGCAGGTTGCGC
CCATTAAACAAAAACTTGCTTATTCTACTGCGAAGGAAGTGGTGGTTAAG
GCTTTGAGTGCCACCAAGGCCTTCGACCTTGTGATAGAAGTAGGGGAAAT
TGATGACCTTGTGCAAGCCTTGGCGACAAGCCATGAGGAGGCAGGCACCA
GCCGTCGTTGTGACAATAGTGATGAAAGTGGTAGTAGTATCAGTAGTAGT
ACACGTTTAAGCGGAGAGTCCACCCCAAAACTGGAACATCCATTGCTAGC
GCGTGCCCGACCAAGACGTCCGGGAAAGCCACGGCCTCGTGTGGTGGAGG
GATGAGAGAATAGGAAACCCGTACGCAGATATTGCGATCAGGTCAATAAG
AGGCTAGGGGTCGCCAAAGTCCTCATATATCCTCTAAAGAAGACAGAGGC
GTGTACTTGGCCAGAAACCACCTGTTGAAGGCTCTCATTGGTGTCCAAAA
TTACTAGTGTAACATGAGGAAAGAATGTAAATTTCGG back to topprotein sequence of jgi.p|Nanoce1779_2|579226 >mRNA_2138-protein ID=mRNA_2138-protein|Name=jgi.p|Nanoce1779_2|579226|organism=Nannochloropsis oceanica|type=polypeptide|length=380bp
MVRAHLAVSESLLDVFQQPESARLLRINIKGEALELAAPPLWKQADEEAD
FHAMVVEGVLRASPIPSSSLLIFTLDDGTRVLIKYLGLSCPVREKMLYSS
SITDLKRGCAANLSLFEAHEREDVTFSGLLDALGKRRKAPAGGVATMMAS
SQQQSQQSAPHPLTKLEELTLAERGTEKNAAVRLHGMSRSSLEIHPDARA
ALAKVRAAGEPGNWLALALVEETVVVAALLSVSFPSINDNVFRNEGILSS
TLPTDEPRFIIVAQQPQHVFIYYCPQVAPIKQKLAYSTAKEVVVKALSAT
KAFDLVIEVGEIDDLVQALATSHEEAGTSRRCDNSDESGSSISSSTRLSG
ESTPKLEHPLLARARPRRPGKPRPRVVEG* back to topmRNA from alignment at scaffold_4:885546..886882- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2138 ID=mRNA_2138|Name=jgi.p|Nanoce1779_2|579226|organism=Nannochloropsis oceanica|type=mRNA|length=1337bp|location=Sequence derived from alignment at scaffold_4:885546..886882- (Nannochloropsis oceanica)
AGGTCATTAAATCGAATGGTACGGGCGCACCTGGCCGTCTCGGAGAGTCT
TCTCGACGTCTTCCAGCAGCCGGAGTCTGCCCGCCTTCTCCGCATCAACA
TCAAAGGCGAGGCTCTGGAGCTGGCAGCCCCTCCCCTATGGAAGCAGGCA
GATGAGGAGGCAGATTTTCATGCAATGGTGGTGGAGGGTGTGCTCCGAGC
TTCCCCCATCCCATCCTCTTCCTTGCTGATATTTACACTCGATGACGGCA
CGCGGGTGCTCATCAAATACCTGGGCCTCTCCTGTCCCGTGCGCGAAAAA
ATGCTCTACTCCTCCTCAATTACGGACCTGAAGAGGGGCTGTGCTGCCAA
CCTTTCCCTCTTTGAAGCGCACGAACGGGAAGATGTGACTTTCTCCGGCC
TGCTGGATGCTCTCGGTAAGCGACGGAAAGCACCAGCAGGTGGAGTGGCT
ACCATGATGGCGTCATCCCAGCAGCAGTCACAGCAGTCTGCACCTCATCC
ACTCACGAAATTGGAGGAGCTAACCCTGGCAGAAAGGGGGACGGAGAAGA
ACGCGGCCGTGCGGCTTCATGGCATGAGCCGCTCGTCTCTCGAAATACAT
CCCGACGCGAGGGCAGCGCTTGCGAAAGTCCGAGCGGCGGGCGAGCCGGG
AAACTGGTTAGCATTGGCCTTGGTTGAGGAAACAGTGGTGGTTGCCGCCC
TTCTTTCGGTGTCTTTTCCATCAATCAATGACAATGTATTTAGGAATGAA
GGGATCTTGTCCTCTACGCTGCCCACAGACGAACCAAGGTTTATAATCGT
GGCCCAGCAACCACAGCATGTCTTCATTTACTACTGCCCGCAGGTTGCGC
CCATTAAACAAAAACTTGCTTATTCTACTGCGAAGGAAGTGGTGGTTAAG
GCTTTGAGTGCCACCAAGGCCTTCGACCTTGTGATAGAAGTAGGGGAAAT
TGATGACCTTGTGCAAGCCTTGGCGACAAGCCATGAGGAGGCAGGCACCA
GCCGTCGTTGTGACAATAGTGATGAAAGTGGTAGTAGTATCAGTAGTAGT
ACACGTTTAAGCGGAGAGTCCACCCCAAAACTGGAACATCCATTGCTAGC
GCGTGCCCGACCAAGACGTCCGGGAAAGCCACGGCCTCGTGTGGTGGAGG
GATGAGAGAATAGGAAACCCGTACGCAGATATTGCGATCAGGTCAATAAG
AGGCTAGGGGTCGCCAAAGTCCTCATATATCCTCTAAAGAAGACAGAGGC
GTGTACTTGGCCAGAAACCACCTGTTGAAGGCTCTCATTGGTGTCCAAAA
TTACTAGTGTAACATGAGGAAAGAATGTAAATTTCGG back to topCoding sequence (CDS) from alignment at scaffold_4:885546..886882- >mRNA_2138 ID=mRNA_2138|Name=jgi.p|Nanoce1779_2|579226|organism=Nannochloropsis oceanica|type=CDS|length=1140bp|location=Sequence derived from alignment at scaffold_4:885546..886882- (Nannochloropsis oceanica)
ATGGTACGGGCGCACCTGGCCGTCTCGGAGAGTCTTCTCGACGTCTTCCA
GCAGCCGGAGTCTGCCCGCCTTCTCCGCATCAACATCAAAGGCGAGGCTC
TGGAGCTGGCAGCCCCTCCCCTATGGAAGCAGGCAGATGAGGAGGCAGAT
TTTCATGCAATGGTGGTGGAGGGTGTGCTCCGAGCTTCCCCCATCCCATC
CTCTTCCTTGCTGATATTTACACTCGATGACGGCACGCGGGTGCTCATCA
AATACCTGGGCCTCTCCTGTCCCGTGCGCGAAAAAATGCTCTACTCCTCC
TCAATTACGGACCTGAAGAGGGGCTGTGCTGCCAACCTTTCCCTCTTTGA
AGCGCACGAACGGGAAGATGTGACTTTCTCCGGCCTGCTGGATGCTCTCG
GTAAGCGACGGAAAGCACCAGCAGGTGGAGTGGCTACCATGATGGCGTCA
TCCCAGCAGCAGTCACAGCAGTCTGCACCTCATCCACTCACGAAATTGGA
GGAGCTAACCCTGGCAGAAAGGGGGACGGAGAAGAACGCGGCCGTGCGGC
TTCATGGCATGAGCCGCTCGTCTCTCGAAATACATCCCGACGCGAGGGCA
GCGCTTGCGAAAGTCCGAGCGGCGGGCGAGCCGGGAAACTGGTTAGCATT
GGCCTTGGTTGAGGAAACAGTGGTGGTTGCCGCCCTTCTTTCGGTGTCTT
TTCCATCAATCAATGACAATGTATTTAGGAATGAAGGGATCTTGTCCTCT
ACGCTGCCCACAGACGAACCAAGGTTTATAATCGTGGCCCAGCAACCACA
GCATGTCTTCATTTACTACTGCCCGCAGGTTGCGCCCATTAAACAAAAAC
TTGCTTATTCTACTGCGAAGGAAGTGGTGGTTAAGGCTTTGAGTGCCACC
AAGGCCTTCGACCTTGTGATAGAAGTAGGGGAAATTGATGACCTTGTGCA
AGCCTTGGCGACAAGCCATGAGGAGGCAGGCACCAGCCGTCGTTGTGACA
ATAGTGATGAAAGTGGTAGTAGTATCAGTAGTAGTACACGTTTAAGCGGA
GAGTCCACCCCAAAACTGGAACATCCATTGCTAGCGCGTGCCCGACCAAG
ACGTCCGGGAAAGCCACGGCCTCGTGTGGTGGAGGGATGA back to top
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