jgi.p|Nanoce1779_2|579217, mRNA_2135 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579217
Unique NamemRNA_2135
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length408
Alignment locationscaffold_4:880460..880970 -

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Properties
Property NameValue
TranscriptId579303
TrackFilteredModels2
ProteinId579217
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:880460..880970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579217gene_2135Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579217mRNA_2135-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2135CDS_2135Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2135 ID=mRNA_2135|Name=jgi.p|Nanoce1779_2|579217|organism=Nannochloropsis oceanica|type=mRNA|length=408bp
TTCTGGACTTAAACGAGGAACGTTTGTCAAACAAGATGAACGAGTACTGT
GCATTGTTGGGCACAAAAGCAAACCCAGAGGATCCGTCTGCCTGCAAATC
TTATCTTTGCATTGATGGCGTCAATGTAAGGGTTTGCTACCCTACCAGGT
ACCAGGAACGGTACTACAATGGGGCCTACAAATACCATGGGATAAAATTC
CAAGGGATGGTATCACCAGTGGGAATCGTTGAATCGTGTTATGGTCCTCT
TCCTAGTGTGCGCAATGACGCTGCGATGTGGGACATCGCCCGTGACTTCA
GTGCGATGACCCGCATCAATGAACGTGTTGGGAGAGTATGCACAGTGTCC
GAGTAGCGCGCTAAGACGAGTTGGTAAGCAAGTCCGTATGCTAGTTCCTT
TGCCTCCT
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protein sequence of jgi.p|Nanoce1779_2|579217

>mRNA_2135-protein ID=mRNA_2135-protein|Name=jgi.p|Nanoce1779_2|579217|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MNEYCALLGTKANPEDPSACKSYLCIDGVNVRVCYPTRYQERYYNGAYKY
HGIKFQGMVSPVGIVESCYGPLPSVRNDAAMWDIARDFSAMTRINERVGR
VCTVSE*
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mRNA from alignment at scaffold_4:880460..880970-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2135 ID=mRNA_2135|Name=jgi.p|Nanoce1779_2|579217|organism=Nannochloropsis oceanica|type=mRNA|length=511bp|location=Sequence derived from alignment at scaffold_4:880460..880970- (Nannochloropsis oceanica)
TTCTGGACTTAAACGAGGAACGTTTGTCAAACAAGATGAACGAGTACTGT
GCATTGTTGGGCACAAAAGCAAACCCAGAGGATCCGTCTGCCTGCAAATC
TTATCTTTGCATTGATGGCGTCAATGTGTAAGTCCCCGTCGCCCTTGTTA
TTCCTTGTCTTGCTTCTCCACGAGCCACTTTGGACTACCCCCCTCACCCT
CAACCACACATTAACTGTCTTCACCTGTAGAAGGGTTTGCTACCCTACCA
GGTACCAGGAACGGTACTACAATGGGGCCTACAAATACCATGGGATAAAA
TTCCAAGGGATGGTATCACCAGTGGGAATCGTTGAATCGTGTTATGGTCC
TCTTCCTAGTGTGCGCAATGACGCTGCGATGTGGGACATCGCCCGTGACT
TCAGTGCGATGACCCGCATCAATGAACGTGTTGGGAGAGTATGCACAGTG
TCCGAGTAGCGCGCTAAGACGAGTTGGTAAGCAAGTCCGTATGCTAGTTC
CTTTGCCTCCT
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Coding sequence (CDS) from alignment at scaffold_4:880460..880970-

>mRNA_2135 ID=mRNA_2135|Name=jgi.p|Nanoce1779_2|579217|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_4:880460..880970- (Nannochloropsis oceanica)
AAGGGTTTGCTACCCTACCAGGTACCAGGAACGGTACTACAATGGGGCCT
ACAAATACCATGGGATAAAATTCCAAGGGATGGTATCACCAGTGGGAATC
GTTGAATCGTGTTATGGTCCTCTTCCTAGTGTGCGCAATGACGCTGCGAT
GTGGGACATCGCCCGTGACTTCAGTGCGATGACCCGCATCAATGAACGTG
TTGGGAGAGTATGCACAGTGTCCGAGTAGATGAACGAGTACTGTGCATTG
TTGGGCACAAAAGCAAACCCAGAGGATCCGTCTGCCTGCAAATCTTATCT
TTGCATTGATGGCGTCAATGTAAGGGTTTGCTACCCTACCAGGTACCAGG
AACGGTACTACAATGGGGCCTACAAATACCATGGGATAAAATTCCAAGGG
ATGGTATCACCAGTGGGAATCGTTGAATCGTGTTATGGTCCTCTTCCTAG
TGTGCGCAATGACGCTGCGATGTGGGACATCGCCCGTGACTTCAGTGCGA
TGACCCGCATCAATGAACGTGTTGGGAGAGTATGCACAGTGTCCGAGTAG
ATGAACGAGTACTGTGCATTGTTGGGCACAAAAGCAAACCCAGAGGATCC
GTCTGCCTGCAAATCTTATCTTTGCATTGATGGCGTCAATGT
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Synonyms
Publications