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Properties
| Property Name | Value |
|---|
| TranscriptId | 579295 |
| Track | FilteredModels2 |
| ProteinId | 579209 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:877159..878630 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2133 ID=mRNA_2133|Name=jgi.p|Nanoce1779_2|579209|organism=Nannochloropsis oceanica|type=mRNA|length=1252bp
ACAGATCGGCAAGCGAAGTGTCAGCTTCCCGCGCCAATCATCATCACATG
CCCGCGAGTAAAGCTGGGCCCTGGACAGGCTTTTGGAATTCCCGTTGGCC
TCTCTTCCTTCTTGTTAGCGTCGGCATGAATTTGCGAAGTCTAGCCCTCG
TGTGGCGTGCGGAAGGCGGAGTGGGAAAGGAGCGCATTAGCCTTCCAAGA
ATAGCGGAGGGGGCGTTGAGGGTTGCTGGACGGCCTTGTTATTGCAGCAG
TAGTAGTAGGGGTAGCGTGGCTTTCTGTGATAAAAGTGGTACCGACATTG
GCGCTAGCACCGATGATGAGGAGGAGGCTTCCACCACCGTTGGCAAGGTG
GAGAAAGGAGGCGACGAGACGACGGGTTCCCCCCGTGGCGGCATCAAGTA
AAGTCTAACTTCGTAGCCGGGGTTCTTGGCACAGCTTTTGATTTATCGAG
TTTCCTATTCAATCTTACCCAAATATCTCACACATCCATCACAGGAAGAA
GCTCCGCGCCATTCGGCAGCACGTCAACCCACTGTCCTCCCTTTACCAAA
GACCCGTGGATCTACCTGAAGGTTGGGTCAAGGCAGCTTTCGCCAAGCCT
CACCTCCCTTTTCACATAGACATTGGATCCGCCCGAGGACGCTTTTGTAT
TGACATGGCGCGCGAAAAGTCGGAGATAAATTTCTTGGGGCTTGAGATTC
GAAGGCCATGTGTAGAAGAGGCGTTGAAGAAGATGGAGAAGTATGGGATT
AAGGATAATGTACATTTTGTCGCCTTGAATGCCAATGTGGACATTGACCG
GGTGGTGAAGGACGTGCAAGAGCAGAGCGAGATTGTGCGATACTCCGTCC
AATTCCCCGACCCCCACTTCAAAGCCAAGCACAAAAAGCGGCGCATGGTC
CAGCCTGCCTTGGTGGCTGCCATGTGCGCCAGTCTCAAGCCGGAGGGAGG
GGAGATATTGATTCAATCAGACGTGCTGGAGGTAGCAGAGAGCATGCGAG
AGGCCTTCGCGGAGGATGAGCTCGTGACTGATGTTTGTCCGCCGGGAGAG
TGGATGGAGGAGAACCCTTTAATGGTGCCGACCGAGAGAGAGAAATTGAC
GTTGGGAAGAGGGGATCCGGTTTATCGGACTGTCTTTCGTAGGAAAGACA
GCAGTTAGATAGGGAGAGTGGGGGAAGGGGTATTCAGTAGCAACACAGAT
AACGAAAGAGGAGGAACTTAAAGTAGTGCATTTTAAATTAAATTATGTTT
GC back to topprotein sequence of jgi.p|Nanoce1779_2|579209 >mRNA_2133-protein ID=mRNA_2133-protein|Name=jgi.p|Nanoce1779_2|579209|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRV
VKDVQEQSEIVRYSVQFPDPHFKAKHKKRRMVQPALVAAMCASLKPEGGE
ILIQSDVLEVAESMREAFAEDELVTDVCPPGEWMEENPLMVPTEREKLTL
GRGDPVYRTVFRRKDSS* back to topmRNA from alignment at scaffold_4:877159..878630- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2133 ID=mRNA_2133|Name=jgi.p|Nanoce1779_2|579209|organism=Nannochloropsis oceanica|type=mRNA|length=1472bp|location=Sequence derived from alignment at scaffold_4:877159..878630- (Nannochloropsis oceanica)
ACAGATCGGCAAGCGAAGTGTCAGCTTCCCGCGCCAATCATCATCACATG
CCCGCGAGTAAAGCTGGGCCCTGGACAGGCTTTTGGAATTCCCGTTGGCC
TCTCTTCCTTCTTGTTAGCGTCGGCATGAATTTGCGAAGTCTAGCCCTCG
TGTGGCGTGCGGAAGGCGGAGTGGGAAAGGAGCGCATTAGCCTTCCAAGA
ATAGCGGAGGGGGCGTTGAGGGTTGCTGGACGGCCTTGTTATTGCAGCAG
TAGTAGTAGGGGTAGCGTGGCTTTCTGTGATAAAAGTGGTACCGACATTG
GCGCTAGCACCGATGATGAGGAGGAGGCTTCCACCACCGTTGGCAAGGTG
GAGAAAGGAGGCGACGAGACGACGGGTTCCCCCCGTGGCGGCATCAAGTA
AAGTCTAACTTCGTAGCCGGGGTTCTTGGCACAGCTTTTGATTTATCGAG
TTTCCTATTCAATCTTACCCAAATATCTCACACATCCATCACAGGAAGAA
GCTCCGCGCCATTCGGCAGCACGTCAACCCACTGTCCTCCCTTTACCAAA
GACCCGTGGATCTACCTGAAGGTTGGGTCAAGGCAGCTTTCGCCAAGCCT
CACCTCCCTTTTCACATAGACATTGGATCCGCCCGAGGACGCTTTTGTAT
TGACATGGCGCGCGAAAAGTCGGAGATAAATTTCTTGGGGCTTGAGATTC
GAAGGCCATGTGTAGAAGAGGCGTTGAAGAAGATGGAGAAGTATGGGATT
AAGGATAATGTACATTTTGTCGCCTTGAATGCCAATGTGGACATTGACCG
GGTGGTGAAGGACGTGCAAGAGCAGAGCGAGATTGTGCGATGTGGGTATA
GATGGAGGATGGAGAGGGAGAGATGAAGAAGGAGGAAGTGGTGAAGTAGG
CCTTAGGCAGACTGTCGAGTCATTTGCCCGCTTGCTCGCGTGCGCGCTTG
AAGCAAAAGTCATCATGCCTTTTCCATTTCTCCCTCCTGTGTGTGTCTTA
CATCCGTGTCGATTTAAAAACTCACCGCTCCGCCACAACCCTTCCCTCTT
TGCGACTCTAGACTCCGTCCAATTCCCCGACCCCCACTTCAAAGCCAAGC
ACAAAAAGCGGCGCATGGTCCAGCCTGCCTTGGTGGCTGCCATGTGCGCC
AGTCTCAAGCCGGAGGGAGGGGAGATATTGATTCAATCAGACGTGCTGGA
GGTAGCAGAGAGCATGCGAGAGGCCTTCGCGGAGGATGAGCTCGTGACTG
ATGTTTGTCCGCCGGGAGAGTGGATGGAGGAGAACCCTTTAATGGTGCCG
ACCGAGAGAGAGAAATTGACGTTGGGAAGAGGGGATCCGGTTTATCGGAC
TGTCTTTCGTAGGAAAGACAGCAGTTAGATAGGGAGAGTGGGGGAAGGGG
TATTCAGTAGCAACACAGATAACGAAAGAGGAGGAACTTAAAGTAGTGCA
TTTTAAATTAAATTATGTTTGC back to topCoding sequence (CDS) from alignment at scaffold_4:877159..878630- >mRNA_2133 ID=mRNA_2133|Name=jgi.p|Nanoce1779_2|579209|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_4:877159..878630- (Nannochloropsis oceanica)
ACTCCGTCCAATTCCCCGACCCCCACTTCAAAGCCAAGCACAAAAAGCGG
CGCATGGTCCAGCCTGCCTTGGTGGCTGCCATGTGCGCCAGTCTCAAGCC
GGAGGGAGGGGAGATATTGATTCAATCAGACGTGCTGGAGGTAGCAGAGA
GCATGCGAGAGGCCTTCGCGGAGGATGAGCTCGTGACTGATGTTTGTCCG
CCGGGAGAGTGGATGGAGGAGAACCCTTTAATGGTGCCGACCGAGAGAGA
GAAATTGACGTTGGGAAGAGGGGATCCGGTTTATCGGACTGTCTTTCGTA
GGAAAGACAGCAGTTAGATGGCGCGCGAAAAGTCGGAGATAAATTTCTTG
GGGCTTGAGATTCGAAGGCCATGTGTAGAAGAGGCGTTGAAGAAGATGGA
GAAGTATGGGATTAAGGATAATGTACATTTTGTCGCCTTGAATGCCAATG
TGGACATTGACCGGGTGGTGAAGGACGTGCAAGAGCAGAGCGAGATTGTG
CGATACTCCGTCCAATTCCCCGACCCCCACTTCAAAGCCAAGCACAAAAA
GCGGCGCATGGTCCAGCCTGCCTTGGTGGCTGCCATGTGCGCCAGTCTCA
AGCCGGAGGGAGGGGAGATATTGATTCAATCAGACGTGCTGGAGGTAGCA
GAGAGCATGCGAGAGGCCTTCGCGGAGGATGAGCTCGTGACTGATGTTTG
TCCGCCGGGAGAGTGGATGGAGGAGAACCCTTTAATGGTGCCGACCGAGA
GAGAGAAATTGACGTTGGGAAGAGGGGATCCGGTTTATCGGACTGTCTTT
CGTAGGAAAGACAGCAGTTAGATGGCGCGCGAAAAGTCGGAGATAAATTT
CTTGGGGCTTGAGATTCGAAGGCCATGTGTAGAAGAGGCGTTGAAGAAGA
TGGAGAAGTATGGGATTAAGGATAATGTACATTTTGTCGCCTTGAATGCC
AATGTGGACATTGACCGGGTGGTGAAGGACGTGCAAGAGCAGAGCGAGAT
TGTGCGAT back to top
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