jgi.p|Nanoce1779_2|579207, mRNA_2132 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579207
Unique NamemRNA_2132
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length829
Alignment locationscaffold_4:876118..877023 +

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Properties
Property NameValue
TranscriptId579293
TrackFilteredModels2
ProteinId579207
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:876118..877023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579207gene_2132Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579207mRNA_2132-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2132CDS_2132Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2132 ID=mRNA_2132|Name=jgi.p|Nanoce1779_2|579207|organism=Nannochloropsis oceanica|type=mRNA|length=829bp
ACAGGCAACGAATGGAGGCATCGCCACCACAACAGGACAATAAAAAGGAA
TCCCAGGGGCCGCCGCACTTGATGGTTGCCATCGAGGTGGACAGAAAGAC
GAATGCGGGGACGACGGTGCGCTGCAGCGTAGCATTTGGCACGGCATGCC
TTTGTCTGGTAGGTGTGGGGCGGCCACGCTTTAGCAAGCATGGGAGCTTT
GGAAGTCATCACTACTTGTCCACACGAGCCTTTTCTAGCTGGAAGGCTTT
GCGCCAGCACGCCGACAACCAGAAGTACCGCGTCATAGGAGTCTGTCTTG
AACGAGCCGTCGAATCATTGTCCGTACACAAACGGCCATTCAATGGCCCC
ACCATCTTTGTGACGTCAACTAAAGGCAAGACTCTGACCGAGGAGCAGAG
GGCAGCTTGCCACTCACTCGTGCACGTTCCTATCATGGGCGGGCCCGCGG
CAAATGCTGTGTTCAGTCCTTCCGGCGGTGGGCTGACCTTAGAGGCAGAT
GTGGCCTTGTCTGTCGTGTTGCATCACTTTACCGCTTGGAGCCAAAGAGA
GGCACACAGGTGGGTTGATGGTGGGGTTGGGGAAAATGGAGCTTCGTGTG
TGCGTCTAAGCTCACGTGAGCGGATACGATATGTGCAACCTTTCCGTTCC
TCCAACCCTTTTTTTAAAATAATATAATTCGCCTTTGACACAGGTTTCAG
GGCCAGAAATACGTGCTCGGTCAGCCAGGGAGGACAGGCGAGGTGGACAA
AGAAGAGCAGCAACGACTGCAAGCAGAGAGGCGACAGCAACGGCAGGTAG
CGGATATTTTGTCGCAACAGGAAGGGGGG
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protein sequence of jgi.p|Nanoce1779_2|579207

>mRNA_2132-protein ID=mRNA_2132-protein|Name=jgi.p|Nanoce1779_2|579207|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MEASPPQQDNKKESQGPPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLV
GVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVCLERAV
ESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAV
FSPSGGGLTLEADVALSVVLHHFTAWSQREAHRWVDGGVGENGASCVRLS
SRERIRYVQPFRSSNPFFKII*
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mRNA from alignment at scaffold_4:876118..877023+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2132 ID=mRNA_2132|Name=jgi.p|Nanoce1779_2|579207|organism=Nannochloropsis oceanica|type=mRNA|length=906bp|location=Sequence derived from alignment at scaffold_4:876118..877023+ (Nannochloropsis oceanica)
ACAGGCAACGAATGGAGGCATCGCCACCACAACAGGACAATAAAAAGGAA
TCCCAGGGGCCGCCGCACTTGATGGTTGCCATCGAGGTGGACAGAAAGGT
GAGATGGTGTAAGCGCACAACCGACCTCCCCTCCCCTCCCCAAGTTAACA
ATCCCGACGAACCATACGACGGCAGACGAATGCGGGGACGACGGTGCGCT
GCAGCGTAGCATTTGGCACGGCATGCCTTTGTCTGGTAGGTGTGGGGCGG
CCACGCTTTAGCAAGCATGGGAGCTTTGGAAGTCATCACTACTTGTCCAC
ACGAGCCTTTTCTAGCTGGAAGGCTTTGCGCCAGCACGCCGACAACCAGA
AGTACCGCGTCATAGGAGTCTGTCTTGAACGAGCCGTCGAATCATTGTCC
GTACACAAACGGCCATTCAATGGCCCCACCATCTTTGTGACGTCAACTAA
AGGCAAGACTCTGACCGAGGAGCAGAGGGCAGCTTGCCACTCACTCGTGC
ACGTTCCTATCATGGGCGGGCCCGCGGCAAATGCTGTGTTCAGTCCTTCC
GGCGGTGGGCTGACCTTAGAGGCAGATGTGGCCTTGTCTGTCGTGTTGCA
TCACTTTACCGCTTGGAGCCAAAGAGAGGCACACAGGTGGGTTGATGGTG
GGGTTGGGGAAAATGGAGCTTCGTGTGTGCGTCTAAGCTCACGTGAGCGG
ATACGATATGTGCAACCTTTCCGTTCCTCCAACCCTTTTTTTAAAATAAT
ATAATTCGCCTTTGACACAGGTTTCAGGGCCAGAAATACGTGCTCGGTCA
GCCAGGGAGGACAGGCGAGGTGGACAAAGAAGAGCAGCAACGACTGCAAG
CAGAGAGGCGACAGCAACGGCAGGTAGCGGATATTTTGTCGCAACAGGAA
GGGGGG
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Coding sequence (CDS) from alignment at scaffold_4:876118..877023+

>mRNA_2132 ID=mRNA_2132|Name=jgi.p|Nanoce1779_2|579207|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at scaffold_4:876118..877023+ (Nannochloropsis oceanica)
ATGGAGGCATCGCCACCACAACAGGACAATAAAAAGGAATCCCAGGGGCC
GCCGCACTTGATGGTTGCCATCGAGGTGGACAGAAAGACGAATGCGGGGA
CGACGGTGCGCTGCAGCGTAGCATTTGGCACGGCATGCCTTTGTCTGGTA
GGTGTGGGGCGGCCACGCTTTAGCAAGCATGGGAGCTTTGGAAGTCATCA
CTACTTGTCCACACGAGCCTTTTCTAGCTGGAAGGCTTTGCGCCAGCACG
CCGACAACCAGAAGTACCGCGTCATAGGAGTCTGTCTTGAACGAGCCGTC
GAATCATTGTCCGTACACAAACGGCCATTCAATGGCCCCACCATCTTTGT
GACGTCAACTAAAGGCAAGACTCTGACCGAGGAGCAGAGGGCAGCTTGCC
ACTCACTCGTGCACGTTCCTATCATGGGCGGGCCCGCGGCAAATGCTGTG
TTCAGTCCTTCCGGCGGTGGGCTGACCTTAGAGGCAGATGTGGCCTTGTC
TGTCGTGTTGCATCACTTTACCGCTTGGAGCCAAAGAGAGGCACACAGGT
GGGTTGATGGTGGGGTTGGGGAAAATGGAGCTTCGTGTGTGCGTCTAAGC
TCACGTGAGCGGATACGATATGTGCAACCTTTCCGTTCCTCCAACCCTTT
TTTTAAAATAATATAAATGGAGGCATCGCCACCACAACAGGACAATAAAA
AGGAATCCCAGGGGCCGCCGCACTTGATGGTTGCCATCGAGGTGGACAGA
AAGACGAATGCGGGGACGACGGTGCGCTGCAGCGTAGCATTTGGCACGGC
ATGCCTTTGTCTGGTAGGTGTGGGGCGGCCACGCTTTAGCAAGCATGGGA
GCTTTGGAAGTCATCACTACTTGTCCACACGAGCCTTTTCTAGCTGGAAG
GCTTTGCGCCAGCACGCCGACAACCAGAAGTACCGCGTCATAGGAGTCTG
TCTTGAACGAGCCGTCGAATCATTGTCCGTACACAAACGGCCATTCAATG
GCCCCACCATCTTTGTGACGTCAACTAAAGGCAAGACTCTGACCGAGGAG
CAGAGGGCAGCTTGCCACTCACTCGTGCACGTTCCTATCATGGGCGGGCC
CGCGGCAAATGCTGTGTTCAGTCCTTCCGGCGGTGGGCTGACCTTAGAGG
CAGATGTGGCCTTGTCTGTCGTGTTGCATCACTTTACCGCTTGGAGCCAA
AGAGAGGCACACAGGTGGGTTGATGGTGGGGTTGGGGAAAATGGAGCTTC
GTGTGTGCGTCTAAGCTCACGTGAGCGGATACGATATGTGCAACCTTTCC
GTTCCTCCAACCCTTTTTTTAAAATAATATAA
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Synonyms
Publications