jgi.p|Nanoce1779_2|579203, mRNA_2131 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579203
Unique NamemRNA_2131
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1270
Alignment locationscaffold_4:874609..875878 -

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Properties
Property NameValue
TranscriptId579289
TrackFilteredModels2
ProteinId579203
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:874609..875878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579203gene_2131Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579203mRNA_2131-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2131CDS_2131Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2131 ID=mRNA_2131|Name=jgi.p|Nanoce1779_2|579203|organism=Nannochloropsis oceanica|type=mRNA|length=1270bp
ACAGTTTCGCAACCCTCGCTTTGCCCCTTCCTGACCACACACACGTTCTC
AAGCCCAACACGTGACGACTATGTCGATTGCAGCTTCGAAAGCCACGAGG
ACAAAGAAGCGGGCCCGAACAAGCGCTGTTTTTGCCTTAGTGTCCGCCTC
TATCCTCATCATTCTTCTCCTCCTAGCGGTACCCGGTCGCCACGTCGCGC
ATGCTATCTCTCCGTCCCGACTGCTGGCTTCGTTTGCCAGCCAGCAACAA
CAACGTGCCACAATGACAGGGCGGGTGGGTAGCCGGGGCCGATCGGCAGC
AGCCGCCTTTCGCAGTGCCGCGGCAGCAGGGTCAAAAACGTCTGCACCCT
ATGCACCTAATGGTGGAAGGCGAGGGCTGGCTGGGGGCAGCAGTGGCTGC
AGCAGAGCAGGCATCGGCCCACCGCCAGACAACACTGCGTTCGTTGCAAC
AGGCAACGACGGCGGTTTGGGGGAGTTCTGGGGCCTCCGGGATGGGAGCC
GGGACATGTTGTCCAGGCGTCCGCAGGATATGGCTAGCAACATGGGTGTA
AGTGGATTAGGAGGGATTGCCGCAGGTTATGTAGCAAAGAGGTTTGGGAA
ATTTTTGAGTTTCGCATGTGGGTTTATGTTGGTGTCGATGAAGGTGGCGG
AGGAATTCGGGTATGTGGCGGTGAATTGGGAGAAGATTGAGGATGATGTG
CATTCGTTTGGAGAAAGTGCATGGGGGCGGCAGGGGAAGGTGCGATTGAA
GGCGGAGAAACTGGCAAAGTCGTGGCAGAATGAGCTAGGGTGGAATGCGA
GCATTGCAGGGTCATTTCTAGCGGGCTTTGCGTACGCCTTCAAATCCACT
TAATTGCTCGGATGGGAGCGGTACGTGTGTAATGCGCCAATTGTGAGATC
GTGCTTGGGTGGAGTGATGATCAGCATCCCAGGTTTGTGTCCTGGGGATT
TGATTCTTACGAGTTGCCTTCTGAGACGGCATGAGTATGTGCGAAGATGC
GTGTACCATGTACAAAGAGGAAGATTAAAGCCAGAGATTAAATGGTGTCC
GGATTTGTTTATATTATATATATTCAGGGGTGTACGCGAAGAAGAAGAGG
TTATTCACGGACGTGAGTCAGAGCAGATTTAAAGGAAGAGAGTAAAAGAG
GATGGTCAGAAGAAAGGGAATTTTTTACTTGACTTTTTTTACCATGAGCA
CGACAGACAAACTCAAAGCATATGGAATGAAAAGAAAGAGTGCTACTACC
TGCTGTAATTTTTAAATGTA
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protein sequence of jgi.p|Nanoce1779_2|579203

>mRNA_2131-protein ID=mRNA_2131-protein|Name=jgi.p|Nanoce1779_2|579203|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MSIAASKATRTKKRARTSAVFALVSASILIILLLLAVPGRHVAHAISPSR
LLASFASQQQQRATMTGRVGSRGRSAAAAFRSAAAAGSKTSAPYAPNGGR
RGLAGGSSGCSRAGIGPPPDNTAFVATGNDGGLGEFWGLRDGSRDMLSRR
PQDMASNMGVSGLGGIAAGYVAKRFGKFLSFACGFMLVSMKVAEEFGYVA
VNWEKIEDDVHSFGESAWGRQGKVRLKAEKLAKSWQNELGWNASIAGSFL
AGFAYAFKST*
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mRNA from alignment at scaffold_4:874609..875878-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2131 ID=mRNA_2131|Name=jgi.p|Nanoce1779_2|579203|organism=Nannochloropsis oceanica|type=mRNA|length=1270bp|location=Sequence derived from alignment at scaffold_4:874609..875878- (Nannochloropsis oceanica)
ACAGTTTCGCAACCCTCGCTTTGCCCCTTCCTGACCACACACACGTTCTC
AAGCCCAACACGTGACGACTATGTCGATTGCAGCTTCGAAAGCCACGAGG
ACAAAGAAGCGGGCCCGAACAAGCGCTGTTTTTGCCTTAGTGTCCGCCTC
TATCCTCATCATTCTTCTCCTCCTAGCGGTACCCGGTCGCCACGTCGCGC
ATGCTATCTCTCCGTCCCGACTGCTGGCTTCGTTTGCCAGCCAGCAACAA
CAACGTGCCACAATGACAGGGCGGGTGGGTAGCCGGGGCCGATCGGCAGC
AGCCGCCTTTCGCAGTGCCGCGGCAGCAGGGTCAAAAACGTCTGCACCCT
ATGCACCTAATGGTGGAAGGCGAGGGCTGGCTGGGGGCAGCAGTGGCTGC
AGCAGAGCAGGCATCGGCCCACCGCCAGACAACACTGCGTTCGTTGCAAC
AGGCAACGACGGCGGTTTGGGGGAGTTCTGGGGCCTCCGGGATGGGAGCC
GGGACATGTTGTCCAGGCGTCCGCAGGATATGGCTAGCAACATGGGTGTA
AGTGGATTAGGAGGGATTGCCGCAGGTTATGTAGCAAAGAGGTTTGGGAA
ATTTTTGAGTTTCGCATGTGGGTTTATGTTGGTGTCGATGAAGGTGGCGG
AGGAATTCGGGTATGTGGCGGTGAATTGGGAGAAGATTGAGGATGATGTG
CATTCGTTTGGAGAAAGTGCATGGGGGCGGCAGGGGAAGGTGCGATTGAA
GGCGGAGAAACTGGCAAAGTCGTGGCAGAATGAGCTAGGGTGGAATGCGA
GCATTGCAGGGTCATTTCTAGCGGGCTTTGCGTACGCCTTCAAATCCACT
TAATTGCTCGGATGGGAGCGGTACGTGTGTAATGCGCCAATTGTGAGATC
GTGCTTGGGTGGAGTGATGATCAGCATCCCAGGTTTGTGTCCTGGGGATT
TGATTCTTACGAGTTGCCTTCTGAGACGGCATGAGTATGTGCGAAGATGC
GTGTACCATGTACAAAGAGGAAGATTAAAGCCAGAGATTAAATGGTGTCC
GGATTTGTTTATATTATATATATTCAGGGGTGTACGCGAAGAAGAAGAGG
TTATTCACGGACGTGAGTCAGAGCAGATTTAAAGGAAGAGAGTAAAAGAG
GATGGTCAGAAGAAAGGGAATTTTTTACTTGACTTTTTTTACCATGAGCA
CGACAGACAAACTCAAAGCATATGGAATGAAAAGAAAGAGTGCTACTACC
TGCTGTAATTTTTAAATGTA
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Coding sequence (CDS) from alignment at scaffold_4:874609..875878-

>mRNA_2131 ID=mRNA_2131|Name=jgi.p|Nanoce1779_2|579203|organism=Nannochloropsis oceanica|type=CDS|length=783bp|location=Sequence derived from alignment at scaffold_4:874609..875878- (Nannochloropsis oceanica)
ATGTCGATTGCAGCTTCGAAAGCCACGAGGACAAAGAAGCGGGCCCGAAC
AAGCGCTGTTTTTGCCTTAGTGTCCGCCTCTATCCTCATCATTCTTCTCC
TCCTAGCGGTACCCGGTCGCCACGTCGCGCATGCTATCTCTCCGTCCCGA
CTGCTGGCTTCGTTTGCCAGCCAGCAACAACAACGTGCCACAATGACAGG
GCGGGTGGGTAGCCGGGGCCGATCGGCAGCAGCCGCCTTTCGCAGTGCCG
CGGCAGCAGGGTCAAAAACGTCTGCACCCTATGCACCTAATGGTGGAAGG
CGAGGGCTGGCTGGGGGCAGCAGTGGCTGCAGCAGAGCAGGCATCGGCCC
ACCGCCAGACAACACTGCGTTCGTTGCAACAGGCAACGACGGCGGTTTGG
GGGAGTTCTGGGGCCTCCGGGATGGGAGCCGGGACATGTTGTCCAGGCGT
CCGCAGGATATGGCTAGCAACATGGGTGTAAGTGGATTAGGAGGGATTGC
CGCAGGTTATGTAGCAAAGAGGTTTGGGAAATTTTTGAGTTTCGCATGTG
GGTTTATGTTGGTGTCGATGAAGGTGGCGGAGGAATTCGGGTATGTGGCG
GTGAATTGGGAGAAGATTGAGGATGATGTGCATTCGTTTGGAGAAAGTGC
ATGGGGGCGGCAGGGGAAGGTGCGATTGAAGGCGGAGAAACTGGCAAAGT
CGTGGCAGAATGAGCTAGGGTGGAATGCGAGCATTGCAGGGTCATTTCTA
GCGGGCTTTGCGTACGCCTTCAAATCCACTTAA
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Synonyms
Publications