jgi.p|Nanoce1779_2|579202, mRNA_2130 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579202
Unique Name	mRNA_2130
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1271
Alignment location	scaffold_4:873363..874633 +

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Properties


Property Name	Value
TranscriptId	579288
Track	FilteredModels2
ProteinId	579202

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:873363..874633 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579202	gene_2130	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579202	mRNA_2130-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2130	CDS_2130	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:873363..874633+
coding sequence from alignment at scaffold_4:873363..874633+

mRNA sequence

>mRNA_2130 ID=mRNA_2130|Name=jgi.p|Nanoce1779_2|579202|organism=Nannochloropsis oceanica|type=mRNA|length=1271bp
AGGTCGCTACCCGCACAGGAAAACCGGGCGACTAATAAAGACGTACCCCA
GCCCTACGACAACCTCCTCTCTTGCCCTCTTGCCCCCCGAGCCTCGCGAA
TCATATCATGACGCGCGACGGTGTTGACCACAATGGGCAAGACCACAAGA
CGCGCAGGCGGGACATCAAGAATTCCAAGAAGCAGCAGCAGAAGGAGACG
AAGCATAAGCAACATAAGCATTCCAAGCAGCAGCGCTTCGATGGATCCTA
TATGGCCGATCAGGACGGTGTAGCGGCCCCCCGTCCACCGACGCCACCTG
CATCACCCGCCGAGGCTACTGCAACTCTTCCCTCTACGACTCCTGCGACA
TCTATAGAAGTAGCATGTAAGGGATTTACAGCCGAGGCAAAGGCACGCTT
TTCTGAACTTACGCCCGGGCAGTGGGCGAAACTCGAGGCTCTGGGTGCCC
TGGTCCAAGAATGGAATGGCAAAGTGAACGTCATTTCCCGAAAGGACATT
GAGAATGTGCTTCTTCGGCACGTGTTACCGTGCATGGGTATTAGCAAGCT
CTTGGCCAAGGCGCCGTCAGGCACGAAGCTGATGGATGTTGGTACTGGAG
GGGGCTTCCCTGGTCTTCCGTTGGCTATTTGCTGCCCGCATGTACATTTC
TGGTTGGTGGATTCAATAGGAAAGAAGGTAAAGGTTGTGGGAGATATGGC
GGCAAGGTTGGGACTGAAGAATGTGACGGCATGGCATACGCGGGTGGAGG
AAGTAAGGGAGAAATTCCACTATATTACCGGGCGGTCAGTTACGGCCATG
CCTCGGTTCGTTGGATGGGTCCAGGACAAGTTTATAGTGCCCTCTGCAGC
AGCAGAGGCAGTAGCAGCAGCAGTAGAAGGGGAAATGACTCCAAGTAGGG
GTATTCTGTACATTAAAGGGGGAATCAACGAAGAGAACCAAGAGGAGGAC
TTAGGGGGTTGGGCACCCACGGCTCGCTACCCGATCAGTGAGTTGATTGG
TGGGGGGGTCTATGAAGGGGATAAGAGCGTGTTACACTTTTCAGTACAGG
ATTTGCAGCGGGGACCACATGGAGGAGGAGCTGCTGGAGGTGGTGGGTTT
CGGGCTGCTGCTACCGGTGGTTGTGGGTTTAAGGTAAGGGGAGAAGGGGG
TTGGGTGGTTGGTGGGGGAGCAGGAAGGGGAGGGAGTGTGCACCAAAAGA
GGAGATGAGCAATAAAATGAAAAGTGAGTAATACATTGTGTGTACATACA
TTTAAAAATTACAGCAGGTAG

protein sequence of jgi.p|Nanoce1779_2|579202

>mRNA_2130-protein ID=mRNA_2130-protein|Name=jgi.p|Nanoce1779_2|579202|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MTRDGVDHNGQDHKTRRRDIKNSKKQQQKETKHKQHKHSKQQRFDGSYMA
DQDGVAAPRPPTPPASPAEATATLPSTTPATSIEVACKGFTAEAKARFSE
LTPGQWAKLEALGALVQEWNGKVNVISRKDIENVLLRHVLPCMGISKLLA
KAPSGTKLMDVGTGGGFPGLPLAICCPHVHFWLVDSIGKKVKVVGDMAAR
LGLKNVTAWHTRVEEVREKFHYITGRSVTAMPRFVGWVQDKFIVPSAAAE
AVAAAVEGEMTPSRGILYIKGGINEENQEEDLGGWAPTARYPISELIGGG
VYEGDKSVLHFSVQDLQRGPHGGGAAGGGGFRAAATGGCGFKVRGEGGWV
VGGGAGRGGSVHQKRR*

mRNA from alignment at scaffold_4:873363..874633+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2130 ID=mRNA_2130|Name=jgi.p|Nanoce1779_2|579202|organism=Nannochloropsis oceanica|type=mRNA|length=1271bp|location=Sequence derived from alignment at scaffold_4:873363..874633+ (Nannochloropsis oceanica)
AGGTCGCTACCCGCACAGGAAAACCGGGCGACTAATAAAGACGTACCCCA
GCCCTACGACAACCTCCTCTCTTGCCCTCTTGCCCCCCGAGCCTCGCGAA
TCATATCATGACGCGCGACGGTGTTGACCACAATGGGCAAGACCACAAGA
CGCGCAGGCGGGACATCAAGAATTCCAAGAAGCAGCAGCAGAAGGAGACG
AAGCATAAGCAACATAAGCATTCCAAGCAGCAGCGCTTCGATGGATCCTA
TATGGCCGATCAGGACGGTGTAGCGGCCCCCCGTCCACCGACGCCACCTG
CATCACCCGCCGAGGCTACTGCAACTCTTCCCTCTACGACTCCTGCGACA
TCTATAGAAGTAGCATGTAAGGGATTTACAGCCGAGGCAAAGGCACGCTT
TTCTGAACTTACGCCCGGGCAGTGGGCGAAACTCGAGGCTCTGGGTGCCC
TGGTCCAAGAATGGAATGGCAAAGTGAACGTCATTTCCCGAAAGGACATT
GAGAATGTGCTTCTTCGGCACGTGTTACCGTGCATGGGTATTAGCAAGCT
CTTGGCCAAGGCGCCGTCAGGCACGAAGCTGATGGATGTTGGTACTGGAG
GGGGCTTCCCTGGTCTTCCGTTGGCTATTTGCTGCCCGCATGTACATTTC
TGGTTGGTGGATTCAATAGGAAAGAAGGTAAAGGTTGTGGGAGATATGGC
GGCAAGGTTGGGACTGAAGAATGTGACGGCATGGCATACGCGGGTGGAGG
AAGTAAGGGAGAAATTCCACTATATTACCGGGCGGTCAGTTACGGCCATG
CCTCGGTTCGTTGGATGGGTCCAGGACAAGTTTATAGTGCCCTCTGCAGC
AGCAGAGGCAGTAGCAGCAGCAGTAGAAGGGGAAATGACTCCAAGTAGGG
GTATTCTGTACATTAAAGGGGGAATCAACGAAGAGAACCAAGAGGAGGAC
TTAGGGGGTTGGGCACCCACGGCTCGCTACCCGATCAGTGAGTTGATTGG
TGGGGGGGTCTATGAAGGGGATAAGAGCGTGTTACACTTTTCAGTACAGG
ATTTGCAGCGGGGACCACATGGAGGAGGAGCTGCTGGAGGTGGTGGGTTT
CGGGCTGCTGCTACCGGTGGTTGTGGGTTTAAGGTAAGGGGAGAAGGGGG
TTGGGTGGTTGGTGGGGGAGCAGGAAGGGGAGGGAGTGTGCACCAAAAGA
GGAGATGAGCAATAAAATGAAAAGTGAGTAATACATTGTGTGTACATACA
TTTAAAAATTACAGCAGGTAG

Coding sequence (CDS) from alignment at scaffold_4:873363..874633+

>mRNA_2130 ID=mRNA_2130|Name=jgi.p|Nanoce1779_2|579202|organism=Nannochloropsis oceanica|type=CDS|length=1101bp|location=Sequence derived from alignment at scaffold_4:873363..874633+ (Nannochloropsis oceanica)
ATGACGCGCGACGGTGTTGACCACAATGGGCAAGACCACAAGACGCGCAG
GCGGGACATCAAGAATTCCAAGAAGCAGCAGCAGAAGGAGACGAAGCATA
AGCAACATAAGCATTCCAAGCAGCAGCGCTTCGATGGATCCTATATGGCC
GATCAGGACGGTGTAGCGGCCCCCCGTCCACCGACGCCACCTGCATCACC
CGCCGAGGCTACTGCAACTCTTCCCTCTACGACTCCTGCGACATCTATAG
AAGTAGCATGTAAGGGATTTACAGCCGAGGCAAAGGCACGCTTTTCTGAA
CTTACGCCCGGGCAGTGGGCGAAACTCGAGGCTCTGGGTGCCCTGGTCCA
AGAATGGAATGGCAAAGTGAACGTCATTTCCCGAAAGGACATTGAGAATG
TGCTTCTTCGGCACGTGTTACCGTGCATGGGTATTAGCAAGCTCTTGGCC
AAGGCGCCGTCAGGCACGAAGCTGATGGATGTTGGTACTGGAGGGGGCTT
CCCTGGTCTTCCGTTGGCTATTTGCTGCCCGCATGTACATTTCTGGTTGG
TGGATTCAATAGGAAAGAAGGTAAAGGTTGTGGGAGATATGGCGGCAAGG
TTGGGACTGAAGAATGTGACGGCATGGCATACGCGGGTGGAGGAAGTAAG
GGAGAAATTCCACTATATTACCGGGCGGTCAGTTACGGCCATGCCTCGGT
TCGTTGGATGGGTCCAGGACAAGTTTATAGTGCCCTCTGCAGCAGCAGAG
GCAGTAGCAGCAGCAGTAGAAGGGGAAATGACTCCAAGTAGGGGTATTCT
GTACATTAAAGGGGGAATCAACGAAGAGAACCAAGAGGAGGACTTAGGGG
GTTGGGCACCCACGGCTCGCTACCCGATCAGTGAGTTGATTGGTGGGGGG
GTCTATGAAGGGGATAAGAGCGTGTTACACTTTTCAGTACAGGATTTGCA
GCGGGGACCACATGGAGGAGGAGCTGCTGGAGGTGGTGGGTTTCGGGCTG
CTGCTACCGGTGGTTGTGGGTTTAAGGTAAGGGGAGAAGGGGGTTGGGTG
GTTGGTGGGGGAGCAGGAAGGGGAGGGAGTGTGCACCAAAAGAGGAGATG
A

Synonyms

Publications