jgi.p|Nanoce1779_2|576573, mRNA_213 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576573
Unique NamemRNA_213
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2047
Alignment locationscaffold_3:536780..538826 -

Link to JBrowse

Properties
Property NameValue
TranscriptId576659
TrackFilteredModels2
ProteinId576573
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:536780..538826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576573gene_213Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576573mRNA_213-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_213CDS_213Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_213 ID=mRNA_213|Name=jgi.p|Nanoce1779_2|576573|organism=Nannochloropsis oceanica|type=mRNA|length=2047bp
GGGGGATCCCAACGTCCTTGTGTAGTATTGTGCAGTAGAAGGACAGCGGC
AGTGGTTGACTGGTTTTTTAAAAGTGATGCCTTACACCTTACATTAGTGT
CCTCAGGGCCTTACTCCCCACAATTCGATTATTCCAAATTCATTCCATAC
CCAACCAACCCTCGCAGATCCGTCGCATGCCTCACAACAAACGTTGTGTT
AATTGTGACAAGGAAAGCATTGCGGGTCATAATAACGTGTGCACCAAATT
TCAGACATTTGTCTGCAACACTTGCAAAAGCGCACACCAGTCTTTCTCTC
ACCGGTGCAAGAGCATCAGCCTTTCTAACTGGACCCATACCGAGGTTCAT
TATCTCTCAGACTCTGCTGGGGGTGGCAATGCTAATGCGCGCTTGACCTG
GCTTGGCAAGCTTCAGGGACACCTGAGGCTCCGGCCAGACGATCCGCTGG
ATAAAGTCAAAGCATTTGTTAACGACGCATACAACCATAATCGGTACTGG
AAGGAGAAGGAGGCCGCTGGCACCAATAGTTACGTCGCCACCACAGAAAG
GCCTGGATCTGTCTCAAGTGAATTGGAGTCCGTTGCATTCACGCAGCAGC
GACGGCAGCAACGGGAAGGCATGTTGTCCACTAGCACAACCAAATTTCCT
CATGTCCGGGCTGACACTGCTCCTACTCCTGTCGCCGCTCCAGTCGTCAC
GGACCTTCTTGACTTTTTCGGCGACTTCACTCAAGCAACGCTCCCCTCCG
TGACTCCCTCCCATCGTCCCATCGTTGATGCCAGTCATGGGACAGCTAGG
CCACCTTCCGGAGGTGCAGGCGACTTTGCCTTTCAAACTGGCAAGGGCAA
TTCAAACTCCGGTATCGTGAGTAGCGCTGCCCCTCGCGCTTCCCCGTCCT
ACTCCCCGGTGCCGACGGGACCCCCGCCACAAGCAGATGATTGGCAACAC
TTTGGACCCACTGTGGCTTCTTCTTCTGTGCCTGGAGATTCCACATTCTT
TGCGACATCAGCAGTGGTGCCCGCATCGAATTTTTATGACTGCACTAACG
GCAGCGCATTCGGCTTCATGAGTTCTGGGCCAAGCGCAACTCCTCACCAC
AATGAATTTTGCGACTTCGCAGCTGCTTCTGTCCCTCCCTGTCCTACGGG
TAGGCAACAACCTTTGACCTGCACTGCTCCCCCCCCGCGACCTGTCCCCC
CCGCGATGAGGCTGACTCGCCCTTTGATAGAGGATCCTTTTGAGGTCCTT
GCACCGCCGCAGCAGCCTTCCTTCTCCTCTGCTTCCTCCAATCTGTACAT
CCCCTCCCAGCAGCCACACCCCTGGGGGCCCATGCCTGCGTCTGCGATGC
TGTTGATGAAAAGTGGAGATGGGTCTTTGCAAGCTAACAGAACTTCTGGT
GATGGTGGCTGTGGTTCCGGGAGGAACCCCCACCGTCCGTCTCACATGCA
GACGCAACCACCGCGGCCTTCCGACCCACAGATGCCAATGATGACGATGA
ATGGTGGTGGTGCAGCTTCTGGTCCACCTCGACGATTTTTGCCCTCCCAA
GGGATGGTGGGTGGGCCCCGCCCGCATATTCCGGTGTATGGCCAACACCA
GCAGCAGCAGTATTCGTCGCAAGCGTCTGACCCGTTCGCAGGTCTGGATT
GGCGCAAGTAGGAGAAGAAGACACGCATTCCATCGATGAACCCTGTATGA
GGTGAAGAATCATTAATATTAAAGCGATAACAGGGAGGATAGTCCAGAAG
AAGCTGGCTTCTCTAGACTTTTCCTTTGGGTCGTCGGAAATCGTCTTTCT
TCATCTCCAGGAATCGACGAGGCCCAGTCAATTTTCGTTTAATTTTATTT
TCATCTAACCAACCGACGAAACGAATTCGAAGTGGATAAAAATCACCATG
TACATGCAAATAATGTTTTAATGAAAAATCACCAGATTCCATACATTATT
TTCTATTGAAGCGCAGAAATACGACAAATCGCTCTCTCTTCCTTCTTTAC
TCCCAAGCCCAATTGAGAAACTCACTCTTTCCTAACCCTCTGTTCTT
back to top

protein sequence of jgi.p|Nanoce1779_2|576573

>mRNA_213-protein ID=mRNA_213-protein|Name=jgi.p|Nanoce1779_2|576573|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MPHNKRCVNCDKESIAGHNNVCTKFQTFVCNTCKSAHQSFSHRCKSISLS
NWTHTEVHYLSDSAGGGNANARLTWLGKLQGHLRLRPDDPLDKVKAFVND
AYNHNRYWKEKEAAGTNSYVATTERPGSVSSELESVAFTQQRRQQREGML
STSTTKFPHVRADTAPTPVAAPVVTDLLDFFGDFTQATLPSVTPSHRPIV
DASHGTARPPSGGAGDFAFQTGKGNSNSGIVSSAAPRASPSYSPVPTGPP
PQADDWQHFGPTVASSSVPGDSTFFATSAVVPASNFYDCTNGSAFGFMSS
GPSATPHHNEFCDFAAASVPPCPTGRQQPLTCTAPPPRPVPPAMRLTRPL
IEDPFEVLAPPQQPSFSSASSNLYIPSQQPHPWGPMPASAMLLMKSGDGS
LQANRTSGDGGCGSGRNPHRPSHMQTQPPRPSDPQMPMMTMNGGGAASGP
PRRFLPSQGMVGGPRPHIPVYGQHQQQQYSSQASDPFAGLDWRK*
back to top

mRNA from alignment at scaffold_3:536780..538826-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_213 ID=mRNA_213|Name=jgi.p|Nanoce1779_2|576573|organism=Nannochloropsis oceanica|type=mRNA|length=2047bp|location=Sequence derived from alignment at scaffold_3:536780..538826- (Nannochloropsis oceanica)
GGGGGATCCCAACGTCCTTGTGTAGTATTGTGCAGTAGAAGGACAGCGGC
AGTGGTTGACTGGTTTTTTAAAAGTGATGCCTTACACCTTACATTAGTGT
CCTCAGGGCCTTACTCCCCACAATTCGATTATTCCAAATTCATTCCATAC
CCAACCAACCCTCGCAGATCCGTCGCATGCCTCACAACAAACGTTGTGTT
AATTGTGACAAGGAAAGCATTGCGGGTCATAATAACGTGTGCACCAAATT
TCAGACATTTGTCTGCAACACTTGCAAAAGCGCACACCAGTCTTTCTCTC
ACCGGTGCAAGAGCATCAGCCTTTCTAACTGGACCCATACCGAGGTTCAT
TATCTCTCAGACTCTGCTGGGGGTGGCAATGCTAATGCGCGCTTGACCTG
GCTTGGCAAGCTTCAGGGACACCTGAGGCTCCGGCCAGACGATCCGCTGG
ATAAAGTCAAAGCATTTGTTAACGACGCATACAACCATAATCGGTACTGG
AAGGAGAAGGAGGCCGCTGGCACCAATAGTTACGTCGCCACCACAGAAAG
GCCTGGATCTGTCTCAAGTGAATTGGAGTCCGTTGCATTCACGCAGCAGC
GACGGCAGCAACGGGAAGGCATGTTGTCCACTAGCACAACCAAATTTCCT
CATGTCCGGGCTGACACTGCTCCTACTCCTGTCGCCGCTCCAGTCGTCAC
GGACCTTCTTGACTTTTTCGGCGACTTCACTCAAGCAACGCTCCCCTCCG
TGACTCCCTCCCATCGTCCCATCGTTGATGCCAGTCATGGGACAGCTAGG
CCACCTTCCGGAGGTGCAGGCGACTTTGCCTTTCAAACTGGCAAGGGCAA
TTCAAACTCCGGTATCGTGAGTAGCGCTGCCCCTCGCGCTTCCCCGTCCT
ACTCCCCGGTGCCGACGGGACCCCCGCCACAAGCAGATGATTGGCAACAC
TTTGGACCCACTGTGGCTTCTTCTTCTGTGCCTGGAGATTCCACATTCTT
TGCGACATCAGCAGTGGTGCCCGCATCGAATTTTTATGACTGCACTAACG
GCAGCGCATTCGGCTTCATGAGTTCTGGGCCAAGCGCAACTCCTCACCAC
AATGAATTTTGCGACTTCGCAGCTGCTTCTGTCCCTCCCTGTCCTACGGG
TAGGCAACAACCTTTGACCTGCACTGCTCCCCCCCCGCGACCTGTCCCCC
CCGCGATGAGGCTGACTCGCCCTTTGATAGAGGATCCTTTTGAGGTCCTT
GCACCGCCGCAGCAGCCTTCCTTCTCCTCTGCTTCCTCCAATCTGTACAT
CCCCTCCCAGCAGCCACACCCCTGGGGGCCCATGCCTGCGTCTGCGATGC
TGTTGATGAAAAGTGGAGATGGGTCTTTGCAAGCTAACAGAACTTCTGGT
GATGGTGGCTGTGGTTCCGGGAGGAACCCCCACCGTCCGTCTCACATGCA
GACGCAACCACCGCGGCCTTCCGACCCACAGATGCCAATGATGACGATGA
ATGGTGGTGGTGCAGCTTCTGGTCCACCTCGACGATTTTTGCCCTCCCAA
GGGATGGTGGGTGGGCCCCGCCCGCATATTCCGGTGTATGGCCAACACCA
GCAGCAGCAGTATTCGTCGCAAGCGTCTGACCCGTTCGCAGGTCTGGATT
GGCGCAAGTAGGAGAAGAAGACACGCATTCCATCGATGAACCCTGTATGA
GGTGAAGAATCATTAATATTAAAGCGATAACAGGGAGGATAGTCCAGAAG
AAGCTGGCTTCTCTAGACTTTTCCTTTGGGTCGTCGGAAATCGTCTTTCT
TCATCTCCAGGAATCGACGAGGCCCAGTCAATTTTCGTTTAATTTTATTT
TCATCTAACCAACCGACGAAACGAATTCGAAGTGGATAAAAATCACCATG
TACATGCAAATAATGTTTTAATGAAAAATCACCAGATTCCATACATTATT
TTCTATTGAAGCGCAGAAATACGACAAATCGCTCTCTCTTCCTTCTTTAC
TCCCAAGCCCAATTGAGAAACTCACTCTTTCCTAACCCTCTGTTCTT
back to top

Coding sequence (CDS) from alignment at scaffold_3:536780..538826-

>mRNA_213 ID=mRNA_213|Name=jgi.p|Nanoce1779_2|576573|organism=Nannochloropsis oceanica|type=CDS|length=1485bp|location=Sequence derived from alignment at scaffold_3:536780..538826- (Nannochloropsis oceanica)
ATGCCTCACAACAAACGTTGTGTTAATTGTGACAAGGAAAGCATTGCGGG
TCATAATAACGTGTGCACCAAATTTCAGACATTTGTCTGCAACACTTGCA
AAAGCGCACACCAGTCTTTCTCTCACCGGTGCAAGAGCATCAGCCTTTCT
AACTGGACCCATACCGAGGTTCATTATCTCTCAGACTCTGCTGGGGGTGG
CAATGCTAATGCGCGCTTGACCTGGCTTGGCAAGCTTCAGGGACACCTGA
GGCTCCGGCCAGACGATCCGCTGGATAAAGTCAAAGCATTTGTTAACGAC
GCATACAACCATAATCGGTACTGGAAGGAGAAGGAGGCCGCTGGCACCAA
TAGTTACGTCGCCACCACAGAAAGGCCTGGATCTGTCTCAAGTGAATTGG
AGTCCGTTGCATTCACGCAGCAGCGACGGCAGCAACGGGAAGGCATGTTG
TCCACTAGCACAACCAAATTTCCTCATGTCCGGGCTGACACTGCTCCTAC
TCCTGTCGCCGCTCCAGTCGTCACGGACCTTCTTGACTTTTTCGGCGACT
TCACTCAAGCAACGCTCCCCTCCGTGACTCCCTCCCATCGTCCCATCGTT
GATGCCAGTCATGGGACAGCTAGGCCACCTTCCGGAGGTGCAGGCGACTT
TGCCTTTCAAACTGGCAAGGGCAATTCAAACTCCGGTATCGTGAGTAGCG
CTGCCCCTCGCGCTTCCCCGTCCTACTCCCCGGTGCCGACGGGACCCCCG
CCACAAGCAGATGATTGGCAACACTTTGGACCCACTGTGGCTTCTTCTTC
TGTGCCTGGAGATTCCACATTCTTTGCGACATCAGCAGTGGTGCCCGCAT
CGAATTTTTATGACTGCACTAACGGCAGCGCATTCGGCTTCATGAGTTCT
GGGCCAAGCGCAACTCCTCACCACAATGAATTTTGCGACTTCGCAGCTGC
TTCTGTCCCTCCCTGTCCTACGGGTAGGCAACAACCTTTGACCTGCACTG
CTCCCCCCCCGCGACCTGTCCCCCCCGCGATGAGGCTGACTCGCCCTTTG
ATAGAGGATCCTTTTGAGGTCCTTGCACCGCCGCAGCAGCCTTCCTTCTC
CTCTGCTTCCTCCAATCTGTACATCCCCTCCCAGCAGCCACACCCCTGGG
GGCCCATGCCTGCGTCTGCGATGCTGTTGATGAAAAGTGGAGATGGGTCT
TTGCAAGCTAACAGAACTTCTGGTGATGGTGGCTGTGGTTCCGGGAGGAA
CCCCCACCGTCCGTCTCACATGCAGACGCAACCACCGCGGCCTTCCGACC
CACAGATGCCAATGATGACGATGAATGGTGGTGGTGCAGCTTCTGGTCCA
CCTCGACGATTTTTGCCCTCCCAAGGGATGGTGGGTGGGCCCCGCCCGCA
TATTCCGGTGTATGGCCAACACCAGCAGCAGCAGTATTCGTCGCAAGCGT
CTGACCCGTTCGCAGGTCTGGATTGGCGCAAGTAG
back to top
Synonyms
Publications