jgi.p|Nanoce1779_2|579178, mRNA_2122 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579178
Unique NamemRNA_2122
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length616
Alignment locationscaffold_4:855782..856397 -

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Properties
Property NameValue
TranscriptId579264
TrackFilteredModels2
ProteinId579178
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:855782..856397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579178gene_2122Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579178mRNA_2122-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2122CDS_2122Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2122 ID=mRNA_2122|Name=jgi.p|Nanoce1779_2|579178|organism=Nannochloropsis oceanica|type=mRNA|length=616bp
ACAGTATGACAGACCCTAGTTGCGTCTTCTGTAACATCATCGCGGGCAAT
GCACCGGCGCACAAAGTGTACGAGGATGAGCACAATGTGGCCTTCCTAGA
CATCCACCCCCTCGCCGATTTCCACACGCTCTTGATTCCAAAGCACCACG
TCGCCCGTATGGAAGACATCGATGATGCCAGTGCTGCTGCCTTGGGAATC
GCCGTCAAACGGCTCAGTCGGATTGTCCACCGATTGACCGGGAACAGGGA
CTTCAATATTCTTCTTGCCAACGGGCAACAGGCTGGGCAAGAAGTGAGGC
ACTCGCATTACCATTTCATCCCGCGAGAAGGGCGACAAGACGGCCTAGGC
TATCGGTGGAAAACCGGGCGACTACCATCGCAAGAGAGGATCAAAGACTT
TTGCAGAAAAGCCTTGTCCTTTTTCGCTTATGCAGGATGAGTAATTGTAC
ATGGAGGGAGTTATACAAAGGGATGAGGATGGGAAAGAGCTGCGTGTTTA
CCCTCTTGGAATCGCGGGCATCGAGCACGATATCTACTCAGACATAAAGC
ACGTACCACGAAAAAAATAATAGTCAAAGAATAAACCAAATACTTGCCTT
GTCCATGAAGTATCTT
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protein sequence of jgi.p|Nanoce1779_2|579178

>mRNA_2122-protein ID=mRNA_2122-protein|Name=jgi.p|Nanoce1779_2|579178|organism=Nannochloropsis oceanica|type=polypeptide|length=145bp
MTDPSCVFCNIIAGNAPAHKVYEDEHNVAFLDIHPLADFHTLLIPKHHVA
RMEDIDDASAAALGIAVKRLSRIVHRLTGNRDFNILLANGQQAGQEVRHS
HYHFIPREGRQDGLGYRWKTGRLPSQERIKDFCRKALSFFAYAG*
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mRNA from alignment at scaffold_4:855782..856397-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2122 ID=mRNA_2122|Name=jgi.p|Nanoce1779_2|579178|organism=Nannochloropsis oceanica|type=mRNA|length=616bp|location=Sequence derived from alignment at scaffold_4:855782..856397- (Nannochloropsis oceanica)
ACAGTATGACAGACCCTAGTTGCGTCTTCTGTAACATCATCGCGGGCAAT
GCACCGGCGCACAAAGTGTACGAGGATGAGCACAATGTGGCCTTCCTAGA
CATCCACCCCCTCGCCGATTTCCACACGCTCTTGATTCCAAAGCACCACG
TCGCCCGTATGGAAGACATCGATGATGCCAGTGCTGCTGCCTTGGGAATC
GCCGTCAAACGGCTCAGTCGGATTGTCCACCGATTGACCGGGAACAGGGA
CTTCAATATTCTTCTTGCCAACGGGCAACAGGCTGGGCAAGAAGTGAGGC
ACTCGCATTACCATTTCATCCCGCGAGAAGGGCGACAAGACGGCCTAGGC
TATCGGTGGAAAACCGGGCGACTACCATCGCAAGAGAGGATCAAAGACTT
TTGCAGAAAAGCCTTGTCCTTTTTCGCTTATGCAGGATGAGTAATTGTAC
ATGGAGGGAGTTATACAAAGGGATGAGGATGGGAAAGAGCTGCGTGTTTA
CCCTCTTGGAATCGCGGGCATCGAGCACGATATCTACTCAGACATAAAGC
ACGTACCACGAAAAAAATAATAGTCAAAGAATAAACCAAATACTTGCCTT
GTCCATGAAGTATCTT
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Coding sequence (CDS) from alignment at scaffold_4:855782..856397-

>mRNA_2122 ID=mRNA_2122|Name=jgi.p|Nanoce1779_2|579178|organism=Nannochloropsis oceanica|type=CDS|length=435bp|location=Sequence derived from alignment at scaffold_4:855782..856397- (Nannochloropsis oceanica)
ATGACAGACCCTAGTTGCGTCTTCTGTAACATCATCGCGGGCAATGCACC
GGCGCACAAAGTGTACGAGGATGAGCACAATGTGGCCTTCCTAGACATCC
ACCCCCTCGCCGATTTCCACACGCTCTTGATTCCAAAGCACCACGTCGCC
CGTATGGAAGACATCGATGATGCCAGTGCTGCTGCCTTGGGAATCGCCGT
CAAACGGCTCAGTCGGATTGTCCACCGATTGACCGGGAACAGGGACTTCA
ATATTCTTCTTGCCAACGGGCAACAGGCTGGGCAAGAAGTGAGGCACTCG
CATTACCATTTCATCCCGCGAGAAGGGCGACAAGACGGCCTAGGCTATCG
GTGGAAAACCGGGCGACTACCATCGCAAGAGAGGATCAAAGACTTTTGCA
GAAAAGCCTTGTCCTTTTTCGCTTATGCAGGATGA
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Synonyms
Publications