jgi.p|Nanoce1779_2|624907, mRNA_2121 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|624907
Unique Name	mRNA_2121
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1247
Alignment location	scaffold_4:854385..855781 +

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Properties


Property Name	Value
TranscriptId	624993
Track	FilteredModels2
ProteinId	624907

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:854385..855781 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|624907	gene_2121	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|624907	mRNA_2121-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2121	CDS_2121	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:854385..855781+
coding sequence from alignment at scaffold_4:854385..855781+

mRNA sequence

>mRNA_2121 ID=mRNA_2121|Name=jgi.p|Nanoce1779_2|624907|organism=Nannochloropsis oceanica|type=mRNA|length=1247bp
ATGCATCATTCAACCAAGAACCTCCCCACTCCTCTTCCTACCCACCACAC
ATTACCCCTACCTCTCCACCAATACAGCCTTGCAATAACTCAGTATTTCC
TGGGCATTGAGGGCAGTGCAAACAAGGTAGGCGTGGGTATAATACGGTAC
CAACCTAAAATGAAGAGGAGGAATGGACCCGAGTCACCCACCAACGACGA
GCAAAATGAGAAAGAGGAGAAGGACGACGAGGGTGAGGAGGAGGAGGAGG
AGGAGGAGTACGTGATTCTATCGAACCCCCGCAAAACCTACATCCCACCT
CCAGGCCATGGATTTCTTCCACGCGACACAGCCTGGCATCATCAAAAGCA
CGTAGTAGCCTTGGTTCGACATGCGCTGACCGAGGCTGGCCTTTCCGAAA
GTCAAATAACGTGCATCTGTTTCACAAAAGGGCCTGGCATGGGCGGACCG
CTTCGATCCTGCGCCGTGGCCGCTCGAACGTTGGCACAATTGTGGGGAAA
GCCTTTGGTGCCAGTGAATCATTGCGTGGCTCACGTGGAGATGGGACGAG
TGGCTACTAAGGCTGCGGACCCCGTGGTGTTGTATGTGAGCGGGGGGAAC
ACTCAGGTGATTGCTTATTCCATGCGTCGGTATCGGATCTTCGGGGAGAC
CATCGATATGGCCGTCGGTAATTGCTTGGATCGCTTCGCCCGACTTTTGA
ATTTGTCTAATGACCCTTCTCCTGGCTATAACATCGAGCAGCTGGCTAAG
CAGGGCAAGGAATACGTGGCCCTCCCCTATGTCGTGAAAGGGATGGATGT
CTCTTTTGCGGGCTTGCTCAGTTTTATTGAGAAAGAGGGTTTGGCGCAGC
TAAGGACAGGGGCTTTAACAGCAGCCGACCTTTGCTTTTCCTTGCAGGAG
ACTATATTTGCGATGCTTGTTGAGATCACAGAGCGGGCCATGGCTCACTG
CGGGCAACGGCAGGTGTTGATCGTGGGGGGTGTGGGTTGTAACAAACGCT
TGCAGGAAATGATGGAGGGAATGGCGAAGGAAAGAGGGGGATCGGTTTGT
GCAATGGACCATCGGTATTGTATTGACAATGGGGGAATGATAGCGCAGGC
AGGGGCTTTTGCTCACCAGTATGGGGCGATGTACACGTTGGCGGACACGG
CCTGCACCCAGCGATTCCGGACGGATGCAGTTGAAGTTTTGTGGCGCCCT
TGAAGGAATGGTTGACGACATGCGTGATTAAGTGTACAAATATAGAT

protein sequence of jgi.p|Nanoce1779_2|624907

>mRNA_2121-protein ID=mRNA_2121-protein|Name=jgi.p|Nanoce1779_2|624907|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MHHSTKNLPTPLPTHHTLPLPLHQYSLAITQYFLGIEGSANKVGVGIIRY
QPKMKRRNGPESPTNDEQNEKEEKDDEGEEEEEEEEYVILSNPRKTYIPP
PGHGFLPRDTAWHHQKHVVALVRHALTEAGLSESQITCICFTKGPGMGGP
LRSCAVAARTLAQLWGKPLVPVNHCVAHVEMGRVATKAADPVVLYVSGGN
TQVIAYSMRRYRIFGETIDMAVGNCLDRFARLLNLSNDPSPGYNIEQLAK
QGKEYVALPYVVKGMDVSFAGLLSFIEKEGLAQLRTGALTAADLCFSLQE
TIFAMLVEITERAMAHCGQRQVLIVGGVGCNKRLQEMMEGMAKERGGSVC
AMDHRYCIDNGGMIAQAGAFAHQYGAMYTLADTACTQRFRTDAVEVLWRP
*

mRNA from alignment at scaffold_4:854385..855781+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2121 ID=mRNA_2121|Name=jgi.p|Nanoce1779_2|624907|organism=Nannochloropsis oceanica|type=mRNA|length=1397bp|location=Sequence derived from alignment at scaffold_4:854385..855781+ (Nannochloropsis oceanica)
ATGCATCATTCAACCAAGAACCTCCCCACTCCTCTTCCTACCCACCACAC
ATTACCCCTACCTCTCCACCAATACAGGTGCAAATCGACCACGCCACGAC
AATGCTGCAGGGAATTGATGGCAACCTCTCTCTTCCGACCGGCAGCCTTG
CAATAACTCAGTATTTCCTGGGCATTGAGGGCAGTGCAAACAAGGTATGT
AGGATTTGGGAGCGGGAGTATCGCCTCACGCACATAACCCAAACTCTCGT
ACTCTCTTTCATCCCCACACTTTCAGGTAGGCGTGGGTATAATACGGTAC
CAACCTAAAATGAAGAGGAGGAATGGACCCGAGTCACCCACCAACGACGA
GCAAAATGAGAAAGAGGAGAAGGACGACGAGGGTGAGGAGGAGGAGGAGG
AGGAGGAGTACGTGATTCTATCGAACCCCCGCAAAACCTACATCCCACCT
CCAGGCCATGGATTTCTTCCACGCGACACAGCCTGGCATCATCAAAAGCA
CGTAGTAGCCTTGGTTCGACATGCGCTGACCGAGGCTGGCCTTTCCGAAA
GTCAAATAACGTGCATCTGTTTCACAAAAGGGCCTGGCATGGGCGGACCG
CTTCGATCCTGCGCCGTGGCCGCTCGAACGTTGGCACAATTGTGGGGAAA
GCCTTTGGTGCCAGTGAATCATTGCGTGGCTCACGTGGAGATGGGACGAG
TGGCTACTAAGGCTGCGGACCCCGTGGTGTTGTATGTGAGCGGGGGGAAC
ACTCAGGTGATTGCTTATTCCATGCGTCGGTATCGGATCTTCGGGGAGAC
CATCGATATGGCCGTCGGTAATTGCTTGGATCGCTTCGCCCGACTTTTGA
ATTTGTCTAATGACCCTTCTCCTGGCTATAACATCGAGCAGCTGGCTAAG
CAGGGCAAGGAATACGTGGCCCTCCCCTATGTCGTGAAAGGGATGGATGT
CTCTTTTGCGGGCTTGCTCAGTTTTATTGAGAAAGAGGGTTTGGCGCAGC
TAAGGACAGGGGCTTTAACAGCAGCCGACCTTTGCTTTTCCTTGCAGGAG
ACTATATTTGCGATGCTTGTTGAGATCACAGAGCGGGCCATGGCTCACTG
CGGGCAACGGCAGGTGTTGATCGTGGGGGGTGTGGGTTGTAACAAACGCT
TGCAGGAAATGATGGAGGGAATGGCGAAGGAAAGAGGGGGATCGGTTTGT
GCAATGGACCATCGGTATTGTATTGACAATGGGGGAATGATAGCGCAGGC
AGGGGCTTTTGCTCACCAGTATGGGGCGATGTACACGTTGGCGGACACGG
CCTGCACCCAGCGATTCCGGACGGATGCAGTTGAAGTTTTGTGGCGCCCT
TGAAGGAATGGTTGACGACATGCGTGATTAAGTGTACAAATATAGAT

Coding sequence (CDS) from alignment at scaffold_4:854385..855781+

>mRNA_2121 ID=mRNA_2121|Name=jgi.p|Nanoce1779_2|624907|organism=Nannochloropsis oceanica|type=CDS|length=3609bp|location=Sequence derived from alignment at scaffold_4:854385..855781+ (Nannochloropsis oceanica)
ATGCATCATTCAACCAAGAACCTCCCCACTCCTCTTCCTACCCACCACAC
ATTACCCCTACCTCTCCACCAATACAGCCTTGCAATAACTCAGTATTTCC
TGGGCATTGAGGGCAGTGCAAACAAGGTAGGCGTGGGTATAATACGGTAC
CAACCTAAAATGAAGAGGAGGAATGGACCCGAGTCACCCACCAACGACGA
GCAAAATGAGAAAGAGGAGAAGGACGACGAGGGTGAGGAGGAGGAGGAGG
AGGAGGAGTACGTGATTCTATCGAACCCCCGCAAAACCTACATCCCACCT
CCAGGCCATGGATTTCTTCCACGCGACACAGCCTGGCATCATCAAAAGCA
CGTAGTAGCCTTGGTTCGACATGCGCTGACCGAGGCTGGCCTTTCCGAAA
GTCAAATAACGTGCATCTGTTTCACAAAAGGGCCTGGCATGGGCGGACCG
CTTCGATCCTGCGCCGTGGCCGCTCGAACGTTGGCACAATTGTGGGGAAA
GCCTTTGGTGCCAGTGAATCATTGCGTGGCTCACGTGGAGATGGGACGAG
TGGCTACTAAGGCTGCGGACCCCGTGGTGTTGTATGTGAGCGGGGGGAAC
ACTCAGGTGATTGCTTATTCCATGCGTCGGTATCGGATCTTCGGGGAGAC
CATCGATATGGCCGTCGGTAATTGCTTGGATCGCTTCGCCCGACTTTTGA
ATTTGTCTAATGACCCTTCTCCTGGCTATAACATCGAGCAGCTGGCTAAG
CAGGGCAAGGAATACGTGGCCCTCCCCTATGTCGTGAAAGGGATGGATGT
CTCTTTTGCGGGCTTGCTCAGTTTTATTGAGAAAGAGGGTTTGGCGCAGC
TAAGGACAGGGGCTTTAACAGCAGCCGACCTTTGCTTTTCCTTGCAGGAG
ACTATATTTGCGATGCTTGTTGAGATCACAGAGCGGGCCATGGCTCACTG
CGGGCAACGGCAGGTGTTGATCGTGGGGGGTGTGGGTTGTAACAAACGCT
TGCAGGAAATGATGGAGGGAATGGCGAAGGAAAGAGGGGGATCGGTTTGT
GCAATGGACCATCGGTATTGTATTGACAATGGGGGAATGATAGCGCAGGC
AGGGGCTTTTGCTCACCAGTATGGGGCGATGTACACGTTGGCGGACACGG
CCTGCACCCAGCGATTCCGGACGGATGCAGTTGAAGTTTTGTGGCGCCCT
TGAATGCATCATTCAACCAAGAACCTCCCCACTCCTCTTCCTACCCACCA
CACATTACCCCTACCTCTCCACCAATACAGCCTTGCAATAACTCAGTATT
TCCTGGGCATTGAGGGCAGTGCAAACAAGGTAGGCGTGGGTATAATACGG
TACCAACCTAAAATGAAGAGGAGGAATGGACCCGAGTCACCCACCAACGA
CGAGCAAAATGAGAAAGAGGAGAAGGACGACGAGGGTGAGGAGGAGGAGG
AGGAGGAGGAGTACGTGATTCTATCGAACCCCCGCAAAACCTACATCCCA
CCTCCAGGCCATGGATTTCTTCCACGCGACACAGCCTGGCATCATCAAAA
GCACGTAGTAGCCTTGGTTCGACATGCGCTGACCGAGGCTGGCCTTTCCG
AAAGTCAAATAACGTGCATCTGTTTCACAAAAGGGCCTGGCATGGGCGGA
CCGCTTCGATCCTGCGCCGTGGCCGCTCGAACGTTGGCACAATTGTGGGG
AAAGCCTTTGGTGCCAGTGAATCATTGCGTGGCTCACGTGGAGATGGGAC
GAGTGGCTACTAAGGCTGCGGACCCCGTGGTGTTGTATGTGAGCGGGGGG
AACACTCAGGTGATTGCTTATTCCATGCGTCGGTATCGGATCTTCGGGGA
GACCATCGATATGGCCGTCGGTAATTGCTTGGATCGCTTCGCCCGACTTT
TGAATTTGTCTAATGACCCTTCTCCTGGCTATAACATCGAGCAGCTGGCT
AAGCAGGGCAAGGAATACGTGGCCCTCCCCTATGTCGTGAAAGGGATGGA
TGTCTCTTTTGCGGGCTTGCTCAGTTTTATTGAGAAAGAGGGTTTGGCGC
AGCTAAGGACAGGGGCTTTAACAGCAGCCGACCTTTGCTTTTCCTTGCAG
GAGACTATATTTGCGATGCTTGTTGAGATCACAGAGCGGGCCATGGCTCA
CTGCGGGCAACGGCAGGTGTTGATCGTGGGGGGTGTGGGTTGTAACAAAC
GCTTGCAGGAAATGATGGAGGGAATGGCGAAGGAAAGAGGGGGATCGGTT
TGTGCAATGGACCATCGGTATTGTATTGACAATGGGGGAATGATAGCGCA
GGCAGGGGCTTTTGCTCACCAGTATGGGGCGATGTACACGTTGGCGGACA
CGGCCTGCACCCAGCGATTCCGGACGGATGCAGTTGAAGTTTTGTGGCGC
CCTTGAATGCATCATTCAACCAAGAACCTCCCCACTCCTCTTCCTACCCA
CCACACATTACCCCTACCTCTCCACCAATACAGCCTTGCAATAACTCAGT
ATTTCCTGGGCATTGAGGGCAGTGCAAACAAGGTAGGCGTGGGTATAATA
CGGTACCAACCTAAAATGAAGAGGAGGAATGGACCCGAGTCACCCACCAA
CGACGAGCAAAATGAGAAAGAGGAGAAGGACGACGAGGGTGAGGAGGAGG
AGGAGGAGGAGGAGTACGTGATTCTATCGAACCCCCGCAAAACCTACATC
CCACCTCCAGGCCATGGATTTCTTCCACGCGACACAGCCTGGCATCATCA
AAAGCACGTAGTAGCCTTGGTTCGACATGCGCTGACCGAGGCTGGCCTTT
CCGAAAGTCAAATAACGTGCATCTGTTTCACAAAAGGGCCTGGCATGGGC
GGACCGCTTCGATCCTGCGCCGTGGCCGCTCGAACGTTGGCACAATTGTG
GGGAAAGCCTTTGGTGCCAGTGAATCATTGCGTGGCTCACGTGGAGATGG
GACGAGTGGCTACTAAGGCTGCGGACCCCGTGGTGTTGTATGTGAGCGGG
GGGAACACTCAGGTGATTGCTTATTCCATGCGTCGGTATCGGATCTTCGG
GGAGACCATCGATATGGCCGTCGGTAATTGCTTGGATCGCTTCGCCCGAC
TTTTGAATTTGTCTAATGACCCTTCTCCTGGCTATAACATCGAGCAGCTG
GCTAAGCAGGGCAAGGAATACGTGGCCCTCCCCTATGTCGTGAAAGGGAT
GGATGTCTCTTTTGCGGGCTTGCTCAGTTTTATTGAGAAAGAGGGTTTGG
CGCAGCTAAGGACAGGGGCTTTAACAGCAGCCGACCTTTGCTTTTCCTTG
CAGGAGACTATATTTGCGATGCTTGTTGAGATCACAGAGCGGGCCATGGC
TCACTGCGGGCAACGGCAGGTGTTGATCGTGGGGGGTGTGGGTTGTAACA
AACGCTTGCAGGAAATGATGGAGGGAATGGCGAAGGAAAGAGGGGGATCG
GTTTGTGCAATGGACCATCGGTATTGTATTGACAATGGGGGAATGATAGC
GCAGGCAGGGGCTTTTGCTCACCAGTATGGGGCGATGTACACGTTGGCGG
ACACGGCCTGCACCCAGCGATTCCGGACGGATGCAGTTGAAGTTTTGTGG
CGCCCTTGA

Synonyms

Publications