jgi.p|Nanoce1779_2|576571, mRNA_212 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576571
Unique Name	mRNA_212
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1737
Alignment location	scaffold_3:534716..536804 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576657
Track	FilteredModels2
ProteinId	576571

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:534716..536804 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576571	gene_212	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576571	mRNA_212-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_212	CDS_212	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:534716..536804+
coding sequence from alignment at scaffold_3:534716..536804+

mRNA sequence

>mRNA_212 ID=mRNA_212|Name=jgi.p|Nanoce1779_2|576571|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp
ACAACAGGGGAGCATGACCAAGGCACTCTGTCTGCTGCTGCTGGTGGTGG
GCGCCTTCACAGCCACGACGACAGCGACGATAACGATAATCGAGGAGGAT
GGTCTCCTCTGCGATTCAAAAGCTACTGAGCGTCTTCATGTCCTGACTAA
AGCGCTCGGTAGCCTGCGAAATGAATACGAGATTCATGAAGGGACTTTGT
CCTTCCATCAGGGAGGGAATCCAGCAGGCAAATATGGAGTTGTAAGATTT
GCCGATAACCTTCTTCCAATCGCCATGCGCAAGGCAAGCAAGGCGACCGC
AGCCTTTCCTCTTCCTCTCGAGAATTCTTTTCTGATGGGACCCCGGGACG
TGGTCTTTTGGTATGGGTGCACACCGCCCCCGGTGCGGTACTTTTCCATC
CGCAGTTACCTTGCATATCGATTCCCAGGAGAAGGAAGGAACATAAGTGG
GTTCATGCCAGGAGCGGAGCTGGGAGATCCCACTAATAATGCAGTCATTC
AAACGACGGGCGGGCCTCATGACCCTTTCAGTAAAACGACCCTGTTTGTC
TCCACGGGCGATCAGCTGGCCTTTCTCCGCGTGCGTGAAGCATTTCGTGA
GGCGGGACATCCCGAACTGGCGACTAACCTCGATACGCTACCGTCTGAGC
TGGTGCATTTCCGTAACGAGGGTTTGCCCTGGGCGTTGGACAGATCGGAC
ACTCTTGCATGGCAGTTTAGAGTGAATGAGTTCATCAATCCATCAGATAG
CGCTGCTTATCTTGACAAATCTTGGCCTGTGTTTTTGTTGCGTGCCAAAC
CGGATGAGGAAGAGGGTGGTGGCAAGCCCCCCATTCCGTTGATCACCCCT
CCTCTCAAAGCCCGCGGCACGGGGGAAAGCGAGGAATGGCTCCGCCCGGC
GTTGAATGAATTAGTGGCGGCCGTGGAGACCCACATGGCTACAGAACGCG
ATCTGGTCCTCGTGCACACCTTCCCTCTTGCTCCTTTGATACCCGACGCC
GCTCGCTGCATCTCCGACGTGAGCTACTGCCCCGTATCGATGCCCATCCC
CGCCTACAACCTTACAGCCTGCAATCCAACCTGTGACTGGTTCACCCGCG
ACAGTCTGTATTCCACCCCACCCTCTGAATCAGACTTCCTGAACTTCTTG
CTCCCCCGGGGCAGAGTGCTGGTGGTGGTGGGAATCAACCACGCTGCATT
GGGGAAAGCCACTTTTACCAACTTCCTGATGACCGGAATCAGGAACCCCG
AACGCCCTGGGCACACCCCGAATTTCTCCAGCAGTCACTTGGCGGGATCT
GGCCAGTACTTTCTGTCGTCACAAAGACCGGAGAGTTTTTTCCTGTATGC
GCAAGAATTGTCACGGGATTGTGGGACACCGGCCAGGCCATTTTGCGAGC
TAGTGACGGAAGAGTGTATTGCGTACGACGAGTATCTATTTTTTGCTGAG
CGGGCATACCTGGAGACTACTACAACTGTGGGGCCCAGCCCGGACGAGAT
AATTTCCCCCTTCATTCTCGCCTTTGATCCAATCCCCGCTCTTTCTCGAC
AGGGAAAACAGCCAGCAGGAGAGGAGAACAAGGCCGCGACAGCAAAACTG
CGTGGACAGGGATCGTCGATGATGGACAAAAAGGAGAACGTGGACTTAGT
AGTCACCAAATGATGTAGGAGTTGAAGAAATGAATCCTCCAAAAATGCAA
TGAAAGTCTGTAAAGAACAGAGGGTTAGGAAAGAGTG

protein sequence of jgi.p|Nanoce1779_2|576571

>mRNA_212-protein ID=mRNA_212-protein|Name=jgi.p|Nanoce1779_2|576571|organism=Nannochloropsis oceanica|type=polypeptide|length=550bp
MTKALCLLLLVVGAFTATTTATITIIEEDGLLCDSKATERLHVLTKALGS
LRNEYEIHEGTLSFHQGGNPAGKYGVVRFADNLLPIAMRKASKATAAFPL
PLENSFLMGPRDVVFWYGCTPPPVRYFSIRSYLAYRFPGEGRNISGFMPG
AELGDPTNNAVIQTTGGPHDPFSKTTLFVSTGDQLAFLRVREAFREAGHP
ELATNLDTLPSELVHFRNEGLPWALDRSDTLAWQFRVNEFINPSDSAAYL
DKSWPVFLLRAKPDEEEGGGKPPIPLITPPLKARGTGESEEWLRPALNEL
VAAVETHMATERDLVLVHTFPLAPLIPDAARCISDVSYCPVSMPIPAYNL
TACNPTCDWFTRDSLYSTPPSESDFLNFLLPRGRVLVVVGINHAALGKAT
FTNFLMTGIRNPERPGHTPNFSSSHLAGSGQYFLSSQRPESFFLYAQELS
RDCGTPARPFCELVTEECIAYDEYLFFAERAYLETTTTVGPSPDEIISPF
ILAFDPIPALSRQGKQPAGEENKAATAKLRGQGSSMMDKKENVDLVVTK*

mRNA from alignment at scaffold_3:534716..536804+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_212 ID=mRNA_212|Name=jgi.p|Nanoce1779_2|576571|organism=Nannochloropsis oceanica|type=mRNA|length=2089bp|location=Sequence derived from alignment at scaffold_3:534716..536804+ (Nannochloropsis oceanica)
ACAACAGGGGAGCATGACCAAGGCACTCTGTCTGCTGCTGCTGGTGGTGG
GCGCCTTCACAGCCACGACGACAGCGACGATAACGATAATCGAGGAGGAT
GGTCTCCTCTGCGATTCAAAAGCTACTGAGCGTCTTCATGTCCTGACTAA
AGCGCTCGGTAGCCTGCGAAATGAATACGAGATTCATGAAGGGACTTTGT
CCTTCCATCAGGGAGGGAATCCAGCAGGCAAATATGGAGTTGTAAGATTT
GCCGATAACCTTCTTCCAATCGCCATGCGCAAGGCAAGCAAGGCGACCGC
AGCCTTTCCTCTTCCTCTCGAGAATTCTTTTCTGATGGGACCCCGGGACG
TGGTCTTTTGGTATGGGTGCACACCGCCCCCGGTGCGGTACTTTTCCATC
CGCAGTTACCTTGCATATCGATTCCCAGGAGAAGGAAGGAACATAAGTGG
GTTCATGCCAGGAGGTACGTTAGAGCTTGTGGAGATAGGGAAAAAGGGAA
AGGGAGGGAGGGAGGGAGGGTGGTAGTCGTGTTTTCCTGTCGTTAAAATG
AGCGAAAATCATTAGAATGACCCCTTACCCCTCCCTCCCTACATCCCTCC
CTCCCTCATTCTTTCACTCTACAAAAGCGGAGCTGGGAGATCCCACTAAT
AATGCAGTCATTCAAACGACGGGCGGGCCTCATGACCCTTTCAGTAAAAC
GACCCTGTTTGTCTCCACGGGCGATCAGCTGGCCTTTCTCCGCGTGCGTG
AAGCATTTCGTGAGGCGGGACATCCCGAACTGGCGACTAACCTCGATACG
CTACCGTCTGAGCTGGTGCATTTCCGTAACGAGGGTTTGCCCTGGGCGTT
GGACAGATCGGACACTCTTGCATGGCAGTTTAGAGTGAATGAGTTCATCA
ATCCATCAGATAGCGCTGCTTATCTTGACAAATCTTGGCCTGTGTTTTTG
TTGCGTGCCAAACCGGATGAGGAAGAGGGTGGTGGCAAGCCCCCCATTCC
GTTGATCACCCCTCCTCTCAAAGCCCGCGGCACGGGGGAAAGCGAGGAAT
GGCTCCGCCCGGCGTTGAATGAATTAGTGGCGGCCGTGGAGACCCACATG
GCTACAGAACGCGATCTGGTCCTCGTGCACACCTTCCCTCTTGCTCCTTT
GATACCCGACGCCGCTCGCTGCATCTCCGACGTGAGCTACTGCCCCGTAT
CGATGCCCATCCCCGCCTACAACCTTACAGCCTGCAATCCAACCTGTGAC
TGGTTCACCCGCGACAGTCTGTATTCCACCCCACCCTCTGAATCAGACTT
CCTGAACTTCTTGCTCCCCCGGGGCAGAGTGCTGGTGGTGGTGGGAATCA
ACCACGCTGCATTGGGGAAAGCCACTTTTACCAACTTCCTGATGACCGGA
ATCAGGAACCCCGAACGCCCTGGGCACACCCCGAATTTCTCCAGCAGTCA
CTTGGCGGGATCTGGCCAGTACTTTCTGTCGTCACAAAGACCGGAGAGTT
TTTTCCTGTATGCGCAAGAATTGTCACGGGATTGTGGGACACCGGCCAGG
CCATTTTGCGAGCTAGTGACGGAAGAGTGTATTGCGTACGACGAGTATCT
ATTTTTTGCTGAGCGGGTACGTGTTGATGTTGAGATGTTGAGTATGGGAA
GGGGGTGGCTGCGTGGGCTGTTTCTACTCGCGTGCACGTGTCAGCTGATC
TGCAGTCGACAACTCCCCGCCTTCATTGTTCTCACAAACCATTTTGCTCG
CTTTACTCACTCCGCGGTACCCTCTTCCCCCCTTTCTCCCCGTCCATCTT
CTCAGGCATACCTGGAGACTACTACAACTGTGGGGCCCAGCCCGGACGAG
ATAATTTCCCCCTTCATTCTCGCCTTTGATCCAATCCCCGCTCTTTCTCG
ACAGGGAAAACAGCCAGCAGGAGAGGAGAACAAGGCCGCGACAGCAAAAC
TGCGTGGACAGGGATCGTCGATGATGGACAAAAAGGAGAACGTGGACTTA
GTAGTCACCAAATGATGTAGGAGTTGAAGAAATGAATCCTCCAAAAATGC
AATGAAAGTCTGTAAAGAACAGAGGGTTAGGAAAGAGTG

Coding sequence (CDS) from alignment at scaffold_3:534716..536804+

>mRNA_212 ID=mRNA_212|Name=jgi.p|Nanoce1779_2|576571|organism=Nannochloropsis oceanica|type=CDS|length=4950bp|location=Sequence derived from alignment at scaffold_3:534716..536804+ (Nannochloropsis oceanica)
ATGACCAAGGCACTCTGTCTGCTGCTGCTGGTGGTGGGCGCCTTCACAGC
CACGACGACAGCGACGATAACGATAATCGAGGAGGATGGTCTCCTCTGCG
ATTCAAAAGCTACTGAGCGTCTTCATGTCCTGACTAAAGCGCTCGGTAGC
CTGCGAAATGAATACGAGATTCATGAAGGGACTTTGTCCTTCCATCAGGG
AGGGAATCCAGCAGGCAAATATGGAGTTGTAAGATTTGCCGATAACCTTC
TTCCAATCGCCATGCGCAAGGCAAGCAAGGCGACCGCAGCCTTTCCTCTT
CCTCTCGAGAATTCTTTTCTGATGGGACCCCGGGACGTGGTCTTTTGGTA
TGGGTGCACACCGCCCCCGGTGCGGTACTTTTCCATCCGCAGTTACCTTG
CATATCGATTCCCAGGAGAAGGAAGGAACATAAGTGGGTTCATGCCAGGA
GCGGAGCTGGGAGATCCCACTAATAATGCAGTCATTCAAACGACGGGCGG
GCCTCATGACCCTTTCAGTAAAACGACCCTGTTTGTCTCCACGGGCGATC
AGCTGGCCTTTCTCCGCGTGCGTGAAGCATTTCGTGAGGCGGGACATCCC
GAACTGGCGACTAACCTCGATACGCTACCGTCTGAGCTGGTGCATTTCCG
TAACGAGGGTTTGCCCTGGGCGTTGGACAGATCGGACACTCTTGCATGGC
AGTTTAGAGTGAATGAGTTCATCAATCCATCAGATAGCGCTGCTTATCTT
GACAAATCTTGGCCTGTGTTTTTGTTGCGTGCCAAACCGGATGAGGAAGA
GGGTGGTGGCAAGCCCCCCATTCCGTTGATCACCCCTCCTCTCAAAGCCC
GCGGCACGGGGGAAAGCGAGGAATGGCTCCGCCCGGCGTTGAATGAATTA
GTGGCGGCCGTGGAGACCCACATGGCTACAGAACGCGATCTGGTCCTCGT
GCACACCTTCCCTCTTGCTCCTTTGATACCCGACGCCGCTCGCTGCATCT
CCGACGTGAGCTACTGCCCCGTATCGATGCCCATCCCCGCCTACAACCTT
ACAGCCTGCAATCCAACCTGTGACTGGTTCACCCGCGACAGTCTGTATTC
CACCCCACCCTCTGAATCAGACTTCCTGAACTTCTTGCTCCCCCGGGGCA
GAGTGCTGGTGGTGGTGGGAATCAACCACGCTGCATTGGGGAAAGCCACT
TTTACCAACTTCCTGATGACCGGAATCAGGAACCCCGAACGCCCTGGGCA
CACCCCGAATTTCTCCAGCAGTCACTTGGCGGGATCTGGCCAGTACTTTC
TGTCGTCACAAAGACCGGAGAGTTTTTTCCTGTATGCGCAAGAATTGTCA
CGGGATTGTGGGACACCGGCCAGGCCATTTTGCGAGCTAGTGACGGAAGA
GTGTATTGCGTACGACGAGTATCTATTTTTTGCTGAGCGGGCATACCTGG
AGACTACTACAACTGTGGGGCCCAGCCCGGACGAGATAATTTCCCCCTTC
ATTCTCGCCTTTGATCCAATCCCCGCTCTTTCTCGACAGGGAAAACAGCC
AGCAGGAGAGGAGAACAAGGCCGCGACAGCAAAACTGCGTGGACAGGGAT
CGTCGATGATGGACAAAAAGGAGAACGTGGACTTAGTAGTCACCAAATGA
ATGACCAAGGCACTCTGTCTGCTGCTGCTGGTGGTGGGCGCCTTCACAGC
CACGACGACAGCGACGATAACGATAATCGAGGAGGATGGTCTCCTCTGCG
ATTCAAAAGCTACTGAGCGTCTTCATGTCCTGACTAAAGCGCTCGGTAGC
CTGCGAAATGAATACGAGATTCATGAAGGGACTTTGTCCTTCCATCAGGG
AGGGAATCCAGCAGGCAAATATGGAGTTGTAAGATTTGCCGATAACCTTC
TTCCAATCGCCATGCGCAAGGCAAGCAAGGCGACCGCAGCCTTTCCTCTT
CCTCTCGAGAATTCTTTTCTGATGGGACCCCGGGACGTGGTCTTTTGGTA
TGGGTGCACACCGCCCCCGGTGCGGTACTTTTCCATCCGCAGTTACCTTG
CATATCGATTCCCAGGAGAAGGAAGGAACATAAGTGGGTTCATGCCAGGA
GCGGAGCTGGGAGATCCCACTAATAATGCAGTCATTCAAACGACGGGCGG
GCCTCATGACCCTTTCAGTAAAACGACCCTGTTTGTCTCCACGGGCGATC
AGCTGGCCTTTCTCCGCGTGCGTGAAGCATTTCGTGAGGCGGGACATCCC
GAACTGGCGACTAACCTCGATACGCTACCGTCTGAGCTGGTGCATTTCCG
TAACGAGGGTTTGCCCTGGGCGTTGGACAGATCGGACACTCTTGCATGGC
AGTTTAGAGTGAATGAGTTCATCAATCCATCAGATAGCGCTGCTTATCTT
GACAAATCTTGGCCTGTGTTTTTGTTGCGTGCCAAACCGGATGAGGAAGA
GGGTGGTGGCAAGCCCCCCATTCCGTTGATCACCCCTCCTCTCAAAGCCC
GCGGCACGGGGGAAAGCGAGGAATGGCTCCGCCCGGCGTTGAATGAATTA
GTGGCGGCCGTGGAGACCCACATGGCTACAGAACGCGATCTGGTCCTCGT
GCACACCTTCCCTCTTGCTCCTTTGATACCCGACGCCGCTCGCTGCATCT
CCGACGTGAGCTACTGCCCCGTATCGATGCCCATCCCCGCCTACAACCTT
ACAGCCTGCAATCCAACCTGTGACTGGTTCACCCGCGACAGTCTGTATTC
CACCCCACCCTCTGAATCAGACTTCCTGAACTTCTTGCTCCCCCGGGGCA
GAGTGCTGGTGGTGGTGGGAATCAACCACGCTGCATTGGGGAAAGCCACT
TTTACCAACTTCCTGATGACCGGAATCAGGAACCCCGAACGCCCTGGGCA
CACCCCGAATTTCTCCAGCAGTCACTTGGCGGGATCTGGCCAGTACTTTC
TGTCGTCACAAAGACCGGAGAGTTTTTTCCTGTATGCGCAAGAATTGTCA
CGGGATTGTGGGACACCGGCCAGGCCATTTTGCGAGCTAGTGACGGAAGA
GTGTATTGCGTACGACGAGTATCTATTTTTTGCTGAGCGGGCATACCTGG
AGACTACTACAACTGTGGGGCCCAGCCCGGACGAGATAATTTCCCCCTTC
ATTCTCGCCTTTGATCCAATCCCCGCTCTTTCTCGACAGGGAAAACAGCC
AGCAGGAGAGGAGAACAAGGCCGCGACAGCAAAACTGCGTGGACAGGGAT
CGTCGATGATGGACAAAAAGGAGAACGTGGACTTAGTAGTCACCAAATGA
ATGACCAAGGCACTCTGTCTGCTGCTGCTGGTGGTGGGCGCCTTCACAGC
CACGACGACAGCGACGATAACGATAATCGAGGAGGATGGTCTCCTCTGCG
ATTCAAAAGCTACTGAGCGTCTTCATGTCCTGACTAAAGCGCTCGGTAGC
CTGCGAAATGAATACGAGATTCATGAAGGGACTTTGTCCTTCCATCAGGG
AGGGAATCCAGCAGGCAAATATGGAGTTGTAAGATTTGCCGATAACCTTC
TTCCAATCGCCATGCGCAAGGCAAGCAAGGCGACCGCAGCCTTTCCTCTT
CCTCTCGAGAATTCTTTTCTGATGGGACCCCGGGACGTGGTCTTTTGGTA
TGGGTGCACACCGCCCCCGGTGCGGTACTTTTCCATCCGCAGTTACCTTG
CATATCGATTCCCAGGAGAAGGAAGGAACATAAGTGGGTTCATGCCAGGA
GCGGAGCTGGGAGATCCCACTAATAATGCAGTCATTCAAACGACGGGCGG
GCCTCATGACCCTTTCAGTAAAACGACCCTGTTTGTCTCCACGGGCGATC
AGCTGGCCTTTCTCCGCGTGCGTGAAGCATTTCGTGAGGCGGGACATCCC
GAACTGGCGACTAACCTCGATACGCTACCGTCTGAGCTGGTGCATTTCCG
TAACGAGGGTTTGCCCTGGGCGTTGGACAGATCGGACACTCTTGCATGGC
AGTTTAGAGTGAATGAGTTCATCAATCCATCAGATAGCGCTGCTTATCTT
GACAAATCTTGGCCTGTGTTTTTGTTGCGTGCCAAACCGGATGAGGAAGA
GGGTGGTGGCAAGCCCCCCATTCCGTTGATCACCCCTCCTCTCAAAGCCC
GCGGCACGGGGGAAAGCGAGGAATGGCTCCGCCCGGCGTTGAATGAATTA
GTGGCGGCCGTGGAGACCCACATGGCTACAGAACGCGATCTGGTCCTCGT
GCACACCTTCCCTCTTGCTCCTTTGATACCCGACGCCGCTCGCTGCATCT
CCGACGTGAGCTACTGCCCCGTATCGATGCCCATCCCCGCCTACAACCTT
ACAGCCTGCAATCCAACCTGTGACTGGTTCACCCGCGACAGTCTGTATTC
CACCCCACCCTCTGAATCAGACTTCCTGAACTTCTTGCTCCCCCGGGGCA
GAGTGCTGGTGGTGGTGGGAATCAACCACGCTGCATTGGGGAAAGCCACT
TTTACCAACTTCCTGATGACCGGAATCAGGAACCCCGAACGCCCTGGGCA
CACCCCGAATTTCTCCAGCAGTCACTTGGCGGGATCTGGCCAGTACTTTC
TGTCGTCACAAAGACCGGAGAGTTTTTTCCTGTATGCGCAAGAATTGTCA
CGGGATTGTGGGACACCGGCCAGGCCATTTTGCGAGCTAGTGACGGAAGA
GTGTATTGCGTACGACGAGTATCTATTTTTTGCTGAGCGGGCATACCTGG
AGACTACTACAACTGTGGGGCCCAGCCCGGACGAGATAATTTCCCCCTTC
ATTCTCGCCTTTGATCCAATCCCCGCTCTTTCTCGACAGGGAAAACAGCC
AGCAGGAGAGGAGAACAAGGCCGCGACAGCAAAACTGCGTGGACAGGGAT
CGTCGATGATGGACAAAAAGGAGAACGTGGACTTAGTAGTCACCAAATGA

Synonyms

Publications