jgi.p|Nanoce1779_2|579165, mRNA_2119 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579165
Unique Name	mRNA_2119
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1724
Alignment location	scaffold_4:851595..853318 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579251
Track	FilteredModels2
ProteinId	579165

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:851595..853318 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579165	gene_2119	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579165	mRNA_2119-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2119	CDS_2119	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:851595..853318+
coding sequence from alignment at scaffold_4:851595..853318+

mRNA sequence

>mRNA_2119 ID=mRNA_2119|Name=jgi.p|Nanoce1779_2|579165|organism=Nannochloropsis oceanica|type=mRNA|length=1724bp
TTATGATGACGCCGACGCCGCGCTTCAAGTCTCATGGCTTCTGCACGCGA
TTCTGAAGCCTCACGCACGACGCACACACTCACTCAGGCTTAAAGCATTC
AGCAGCTCTTCCTTGTGATAATCAAGGGCATGTCTGGTCCAGCCGATGCC
AGGGGCCCTGCCCGAGTATCCGATACCATTATTGGTGCGCCCGACCGCCA
CCATGTCGGTCTGACCATCCTCGTCGCCCTTCTCCTGAGCGCCTTTTGCT
TTTGCGAATTCTTCATGCTGCCCGTGGCGATGGCGTTACTGCCCGTGCCA
GGTACAACATCGAGGAAGTTGCTGCGGCGCTGGGAGGGCTTGGTAGCCAA
AACTTGGCTGTCCTTTGGAGGGTGGCTCCTGGAAAATGTGGGTGGGGTCA
AGCTCATTCTTACGGGCGACTCGATACTCCCCGGTGATCGTGTGCTGATT
CTCAGCAATCATAGGACGAGAATTGATTGGATGTTTCTATGGTGCTGGGC
TGCACGTTTCGACCTGCTTTCCTCGTACCGAGTCATTCTCAAGTCGTCTT
TACGCACTTTCCCCTGGTGGGGCTGGGGGATGAGTTTATGTTTGTTTCCT
TTCATCCACCGAGGAAGCAACAATCGCGACGCGGATTTGACCCGTATTGA
ACATATTTGTCAGTATTTAAGCGAGCTGGGTGTGCCAAACTCCCTCATTC
TCTTCCCAGAAGGAACTGACCTTTCCCAATCTAACCAAAAACGCGATCGT
GATTATGCTCTAGCCAAAAACCTACCCATTTACCATAACGTGCTTCACCC
ACGTTCAGGCGCCTTTATTGCTAGCTTGACGGCCATGCGTCCTCATTTGG
ATGCTGTTGTGGATCTTACTATCGGCTATGTCGATTACACACCAGGGGAA
AGACCTTCCGAGCTCTCTCTTCTCAAGGGCCGGCTACCGCACGAGGTCCA
CATAAATATGAAACGATGGGACATAAAGACGACTCCCTTACTTCGAGAGA
ACCCATCGGACCGGGCGGAACAATTTTTGCGCGAATCTTTTGATCGGAAA
GAGGCATTGCTGACAGCCTTCTACAGCAACAACACGGACACTTCAGGTGG
TGGGCTCAAGCAAACGTCATCATTGCTCGTATCCTCTTCCTCTTCACCTT
TCTCCAATAGCAGTGCACCTTTAGGATTTCCTTCCTTCTCCTCCCCCTCC
ACCTCCGTCGCCTCTTCTTACAACGAGCCAGTGTATGTACACAATGCTCA
CTGGACATACGGCAAAGGGCTTTTGGGGACGGGGATTGCCATGGCGTTGG
TGCTGATGTTAGCGTGCTGCTTGCCTGCTGTTGCGTTTTGCGGGTATAGT
ATCGTTGTCTTTTTGTTGTTCGTGACAGTGAATTCGGTGTGGGAGGGCTT
CGATACCTTGGAATTGAATTTGGCTGTGTGGTGGGGCGGGCAGGCAGGGC
AAACGAAGCAAGAGTGAATAGAAGGAGAAAAAGGATAAGGTAGATCTAGC
ACGGGATTTGTATGGATGCGCTTGGACAGTAAGGAGATCAGGGATTTCAG
TACAGCGAGTACATTATAGCGATTGCCAGGCGGGCGGTCGCAGCGCAGGC
AGGGTATGGTCCGTTGTGACGTACACATACATATTTGTAGACTAACGAAA
TTCAAAACCCGTCACATAGCGAATGTGAGGAAAGATAAGAGTAGTGAGAC
AGGAAAAAAATGATAAGCGACTCA

protein sequence of jgi.p|Nanoce1779_2|579165

>mRNA_2119-protein ID=mRNA_2119-protein|Name=jgi.p|Nanoce1779_2|579165|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MSGPADARGPARVSDTIIGAPDRHHVGLTILVALLLSAFCFCEFFMLPVA
MALLPVPGTTSRKLLRRWEGLVAKTWLSFGGWLLENVGGVKLILTGDSIL
PGDRVLILSNHRTRIDWMFLWCWAARFDLLSSYRVILKSSLRTFPWWGWG
MSLCLFPFIHRGSNNRDADLTRIEHICQYLSELGVPNSLILFPEGTDLSQ
SNQKRDRDYALAKNLPIYHNVLHPRSGAFIASLTAMRPHLDAVVDLTIGY
VDYTPGERPSELSLLKGRLPHEVHINMKRWDIKTTPLLRENPSDRAEQFL
RESFDRKEALLTAFYSNNTDTSGGGLKQTSSLLVSSSSSPFSNSSAPLGF
PSFSSPSTSVASSYNEPVYVHNAHWTYGKGLLGTGIAMALVLMLACCLPA
VAFCGYSIVVFLLFVTVNSVWEGFDTLELNLAVWWGGQAGQTKQE*

mRNA from alignment at scaffold_4:851595..853318+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2119 ID=mRNA_2119|Name=jgi.p|Nanoce1779_2|579165|organism=Nannochloropsis oceanica|type=mRNA|length=1724bp|location=Sequence derived from alignment at scaffold_4:851595..853318+ (Nannochloropsis oceanica)
TTATGATGACGCCGACGCCGCGCTTCAAGTCTCATGGCTTCTGCACGCGA
TTCTGAAGCCTCACGCACGACGCACACACTCACTCAGGCTTAAAGCATTC
AGCAGCTCTTCCTTGTGATAATCAAGGGCATGTCTGGTCCAGCCGATGCC
AGGGGCCCTGCCCGAGTATCCGATACCATTATTGGTGCGCCCGACCGCCA
CCATGTCGGTCTGACCATCCTCGTCGCCCTTCTCCTGAGCGCCTTTTGCT
TTTGCGAATTCTTCATGCTGCCCGTGGCGATGGCGTTACTGCCCGTGCCA
GGTACAACATCGAGGAAGTTGCTGCGGCGCTGGGAGGGCTTGGTAGCCAA
AACTTGGCTGTCCTTTGGAGGGTGGCTCCTGGAAAATGTGGGTGGGGTCA
AGCTCATTCTTACGGGCGACTCGATACTCCCCGGTGATCGTGTGCTGATT
CTCAGCAATCATAGGACGAGAATTGATTGGATGTTTCTATGGTGCTGGGC
TGCACGTTTCGACCTGCTTTCCTCGTACCGAGTCATTCTCAAGTCGTCTT
TACGCACTTTCCCCTGGTGGGGCTGGGGGATGAGTTTATGTTTGTTTCCT
TTCATCCACCGAGGAAGCAACAATCGCGACGCGGATTTGACCCGTATTGA
ACATATTTGTCAGTATTTAAGCGAGCTGGGTGTGCCAAACTCCCTCATTC
TCTTCCCAGAAGGAACTGACCTTTCCCAATCTAACCAAAAACGCGATCGT
GATTATGCTCTAGCCAAAAACCTACCCATTTACCATAACGTGCTTCACCC
ACGTTCAGGCGCCTTTATTGCTAGCTTGACGGCCATGCGTCCTCATTTGG
ATGCTGTTGTGGATCTTACTATCGGCTATGTCGATTACACACCAGGGGAA
AGACCTTCCGAGCTCTCTCTTCTCAAGGGCCGGCTACCGCACGAGGTCCA
CATAAATATGAAACGATGGGACATAAAGACGACTCCCTTACTTCGAGAGA
ACCCATCGGACCGGGCGGAACAATTTTTGCGCGAATCTTTTGATCGGAAA
GAGGCATTGCTGACAGCCTTCTACAGCAACAACACGGACACTTCAGGTGG
TGGGCTCAAGCAAACGTCATCATTGCTCGTATCCTCTTCCTCTTCACCTT
TCTCCAATAGCAGTGCACCTTTAGGATTTCCTTCCTTCTCCTCCCCCTCC
ACCTCCGTCGCCTCTTCTTACAACGAGCCAGTGTATGTACACAATGCTCA
CTGGACATACGGCAAAGGGCTTTTGGGGACGGGGATTGCCATGGCGTTGG
TGCTGATGTTAGCGTGCTGCTTGCCTGCTGTTGCGTTTTGCGGGTATAGT
ATCGTTGTCTTTTTGTTGTTCGTGACAGTGAATTCGGTGTGGGAGGGCTT
CGATACCTTGGAATTGAATTTGGCTGTGTGGTGGGGCGGGCAGGCAGGGC
AAACGAAGCAAGAGTGAATAGAAGGAGAAAAAGGATAAGGTAGATCTAGC
ACGGGATTTGTATGGATGCGCTTGGACAGTAAGGAGATCAGGGATTTCAG
TACAGCGAGTACATTATAGCGATTGCCAGGCGGGCGGTCGCAGCGCAGGC
AGGGTATGGTCCGTTGTGACGTACACATACATATTTGTAGACTAACGAAA
TTCAAAACCCGTCACATAGCGAATGTGAGGAAAGATAAGAGTAGTGAGAC
AGGAAAAAAATGATAAGCGACTCA

Coding sequence (CDS) from alignment at scaffold_4:851595..853318+

>mRNA_2119 ID=mRNA_2119|Name=jgi.p|Nanoce1779_2|579165|organism=Nannochloropsis oceanica|type=CDS|length=1338bp|location=Sequence derived from alignment at scaffold_4:851595..853318+ (Nannochloropsis oceanica)
ATGTCTGGTCCAGCCGATGCCAGGGGCCCTGCCCGAGTATCCGATACCAT
TATTGGTGCGCCCGACCGCCACCATGTCGGTCTGACCATCCTCGTCGCCC
TTCTCCTGAGCGCCTTTTGCTTTTGCGAATTCTTCATGCTGCCCGTGGCG
ATGGCGTTACTGCCCGTGCCAGGTACAACATCGAGGAAGTTGCTGCGGCG
CTGGGAGGGCTTGGTAGCCAAAACTTGGCTGTCCTTTGGAGGGTGGCTCC
TGGAAAATGTGGGTGGGGTCAAGCTCATTCTTACGGGCGACTCGATACTC
CCCGGTGATCGTGTGCTGATTCTCAGCAATCATAGGACGAGAATTGATTG
GATGTTTCTATGGTGCTGGGCTGCACGTTTCGACCTGCTTTCCTCGTACC
GAGTCATTCTCAAGTCGTCTTTACGCACTTTCCCCTGGTGGGGCTGGGGG
ATGAGTTTATGTTTGTTTCCTTTCATCCACCGAGGAAGCAACAATCGCGA
CGCGGATTTGACCCGTATTGAACATATTTGTCAGTATTTAAGCGAGCTGG
GTGTGCCAAACTCCCTCATTCTCTTCCCAGAAGGAACTGACCTTTCCCAA
TCTAACCAAAAACGCGATCGTGATTATGCTCTAGCCAAAAACCTACCCAT
TTACCATAACGTGCTTCACCCACGTTCAGGCGCCTTTATTGCTAGCTTGA
CGGCCATGCGTCCTCATTTGGATGCTGTTGTGGATCTTACTATCGGCTAT
GTCGATTACACACCAGGGGAAAGACCTTCCGAGCTCTCTCTTCTCAAGGG
CCGGCTACCGCACGAGGTCCACATAAATATGAAACGATGGGACATAAAGA
CGACTCCCTTACTTCGAGAGAACCCATCGGACCGGGCGGAACAATTTTTG
CGCGAATCTTTTGATCGGAAAGAGGCATTGCTGACAGCCTTCTACAGCAA
CAACACGGACACTTCAGGTGGTGGGCTCAAGCAAACGTCATCATTGCTCG
TATCCTCTTCCTCTTCACCTTTCTCCAATAGCAGTGCACCTTTAGGATTT
CCTTCCTTCTCCTCCCCCTCCACCTCCGTCGCCTCTTCTTACAACGAGCC
AGTGTATGTACACAATGCTCACTGGACATACGGCAAAGGGCTTTTGGGGA
CGGGGATTGCCATGGCGTTGGTGCTGATGTTAGCGTGCTGCTTGCCTGCT
GTTGCGTTTTGCGGGTATAGTATCGTTGTCTTTTTGTTGTTCGTGACAGT
GAATTCGGTGTGGGAGGGCTTCGATACCTTGGAATTGAATTTGGCTGTGT
GGTGGGGCGGGCAGGCAGGGCAAACGAAGCAAGAGTGA

Synonyms

Publications