Properties
| Property Name | Value |
|---|
| TranscriptId | 579232 |
| Track | FilteredModels2 |
| ProteinId | 579146 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:845862..848568 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2117 ID=mRNA_2117|Name=jgi.p|Nanoce1779_2|579146|organism=Nannochloropsis oceanica|type=mRNA|length=2094bp
ACAGGTTCCAATTCACGGAAGGATGGAGCAGGAGAAGCCACCTGTGCCTG
CTGGTGGCCCAATAACCACGGACAAGTCTGAGGGCGTATCTAAGAGAGTA
GCCAAGCATTTGAGGCGGCAGGAAATGTGGAAGGTGAAAAAAGCTGCCAA
AAAGGAGGCCAAGAAGGCGGCACGTGAGGAGGCTAAACGGCAGCAGCAGA
AGGATGGTGTAGTTTCAGGCCAAAAAGATAAAGAAATCGATCCTGTTCTG
CAACAAGAGCGACGAGAGCACCGTTTAATTCAGAGACGTGAGGCACAGGA
GGATTTTGTGCGTCGGTGTGCAGAGGGCGCTAGAGTAGTGGTTGACTGTG
GGTTCGACGATCAAATGACCGAGAAGGAGCTCAAATCTTTAGGGCAACAA
GTGATGTATGTCTACGCATCGAACAAGCGCGCACCGTCTCCTTGTACCAT
TTATCTAACGGAGCTGGGGCCTTCTATGGAAAAACGGTTGTCCGGCTTAG
CAGGCACACAAAACTGGCACGGTTTCGTGCGGGAGCCACGACCCTACGTG
GAGGCCTTCGCGGGCGAGCGGGAGAAGCTTGTGTATCTTACTTCTGACTC
TCCAAACAGCTTGACTAAATGGGACCGAGGCGCAGTTTACATAATCGGCG
GCATCGTCGATCGGAACCGGCTCAAGAGGGTGACCTATGAGAAGGCTCTG
GTGCAAGGCATTGTCACGGCTCGATTTCCTTTGCAGGAGTACGTGACCCT
AGGGAGCACGCCGGTGTTGACTGTGAATCATGTTTTTGACATTTTGCTCG
AGTTCCAGCACACTAACGACTGGCGCGCTGCTTTTGCCAAGGTCTTACCG
CAACGGAAAGGTTTAAACTTGAGGACATCATCGGAGGCTGATGGTGGTAT
GGGGGGCCAGCAGGTGGAGCGGCAGCAAGAGGAGGGGAAATGGTTGGTGA
GAGAGGAGGGAGAAGAGCAAGCAAGGGAGGAAAAGGGGTAGGAGGTCTGT
AGAAGCACTTTTCCAAGGAGTCATTAAAATTACCGAAATATATCAAAAAT
TACTCGCAGTATTCCCCTTGCTTTACTTTACTTTAAAAGTTGGCCGACCT
CAGCGATGATGGCCTGCATTAATTGTTGTAAATTTTCTGGTTTCCCGGCC
CCCGCTGACGCCTCCTCCAAAGCGCTCAGCAACCATCCCTCACGGACCAA
GGCTTGCTGCGTCTTCTTGAAGCGAGCAAAACTCCGTATAGCAACAGCAG
CGCGATGAATGAGGTCGCTATCCCCACTCGACAGTAAAGTCCTCCATACG
CTCAACCCCATTATTGGAACTTCCACAATGCCACTGGCCATTTCTTCGTC
CCCTGACGCTATTGCCAACCCCCCGGCGGCAGCACGTGCGGTGAGAAGGT
CCCCTTCGTAATCTTCTGCCAGAGCCAGCCAAAGCTTGAGTGTATCAGGA
TTTCGAAGACTTGCAAGCACATGTGGGTGATAAACCATGTTGCAGAGGGC
CTCGGTGGCTGCTCGTCTGACCAGCAGATGCTCCGAGAATTGCATTGAGA
GCAAGCATTTAAGTCCCTGATTACTGAGGATGGCTTCCACACAGTCTTCC
TCATGGGAAGCAAGATTCGTAAGAGCTAAGAGGGACTCGAATTGCTGGAG
ATAAGTTACCATGGGATGGCGGCATAGCCAGAGCAAGCCAGCTATGGGGG
CCAGGCGTTGCCTGTCGGAGAGCATTTTGGGGTTGGTTGTGACTAGACAC
TTAGCCAGGGCATGCAGCGACTTTATCCGTGTGGTTTCCATCGACTTTGC
GCCCTTTTTAGCAATGCTTAAGCAAGCATTGTATCCTCCTTCCAGAATTA
GACGTCCCCTCACTTCAGGCACCGTTGCGATTTGCACCAATGCCGTCACT
GCTTGTTCTTGTGCTAAGGGACTTAACCCCTGGAAGGAGAGAAGCCGACT
GAGGGCACGGATGGCGTTGAGGCGGACCAGCTCCTTCACGCGAGATTCAA
CGTCCTCGGGCGGGTCAGCGGCTTCAATGATGTCCACTTCACTTCCTTCC
TGCAGTTGTTGCATCTCCTGGATTTTCCGCAGCTGCTCGAACTC back to topprotein sequence of jgi.p|Nanoce1779_2|579146 >mRNA_2117-protein ID=mRNA_2117-protein|Name=jgi.p|Nanoce1779_2|579146|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MEQEKPPVPAGGPITTDKSEGVSKRVAKHLRRQEMWKVKKAAKKEAKKAA
REEAKRQQQKDGVVSGQKDKEIDPVLQQERREHRLIQRREAQEDFVRRCA
EGARVVVDCGFDDQMTEKELKSLGQQVMYVYASNKRAPSPCTIYLTELGP
SMEKRLSGLAGTQNWHGFVREPRPYVEAFAGEREKLVYLTSDSPNSLTKW
DRGAVYIIGGIVDRNRLKRVTYEKALVQGIVTARFPLQEYVTLGSTPVLT
VNHVFDILLEFQHTNDWRAAFAKVLPQRKGLNLRTSSEADGGMGGQQVER
QQEEGKWLVREEGEEQAREEKG* back to topmRNA from alignment at scaffold_4:845862..848568+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2117 ID=mRNA_2117|Name=jgi.p|Nanoce1779_2|579146|organism=Nannochloropsis oceanica|type=mRNA|length=2707bp|location=Sequence derived from alignment at scaffold_4:845862..848568+ (Nannochloropsis oceanica)
ACAGGTTCCAATTCACGGAAGGATGGAGCAGGAGAAGCCACCTGTGCCTG
CTGGTGGCCCAATAACCACGGACAAGTCTGAGGTGGGTGAGCCCTCATGT
GTGTGTGAGGCAGCCTCGGCTCCTCATCAACCTCCCCACCCTCTCAACCC
TCGGAAAAGAGGCAACGATGATGACTCTTACGTTGTCAGACCGTCCAAAA
CAAGGATGCAGGGCGTATCTAAGAGAGTAGCCAAGCATTTGAGGCGGCAG
GAAATGTGGAAGGTGAAAAAAGCTGCCAAAAAGGAGGCCAAGAAGGCGGC
ACGTGAGGAGGCTAAACGGCAGCAGCAGAAGGATGGTGTAGTTTCAGGCC
AAAAAGATAAAGAAATCGATCCTGTTCTGCAACAAGAGCGACGAGAGCAC
CGTTTAATTCAGAGACGTGAGGCACAGGAGGATTTTGTGCGTCGGTGTGC
AGAGGGCGCTAGAGTAGTGGTTGACTGTGGGTTCGACGATCAAATGACCG
AGAAGGAGCTCAAATCTTTAGGGCAACAAGTGATGTATGTCTACGCATCG
AACAAGCGCGCACCGTCTCCTTGTACCATTTATCTAACGGAGTGAGTAAA
CCATAAGATTCATCGTGTTGCAGCACGTTTCCAGTGGAGAAGAAAATCAT
ATAGCGTATTTTTCTAAAAGCACGACTCTCACCCTTCCCACCATCCTCCC
AACTCAAACGCAAACAGGCTGGGGCCTTCTATGGAAAAACGGTTGTCCGG
CTTAGCAGGCACACAAAACTGGCACGGTTTCGTGCGGGAGCCACGACCCT
ACGTGGAGGCCTTCGCGGGCGAGCGGGAGAAGCTTGTGTATCTTACTTCT
GACTCTCCAAACAGCTTGACTAAATGGGACCGAGGCGCAGTTTACATAAT
CGGCGGCATCGTCGATCGGAACCGGCTCAAGAGGGTGACCTATGAGAAGG
CTCTGGTGCAAGGCATTGTCACGGCTCGATTTCCTTTGCAGGAGTACGTG
ACCCTAGGGAGCACGCCGGTGTTGACTGTGAATCATGTTTTTGACATTTT
GCTCGAGTTCCAGCACACTAACGACTGGCGCGCTGCTTTTGCCAAGGTCT
TACCGCAACGGAAAGGTTTAAACTTGAGGACATCATCGGAGGCTGATGGT
GGTATGGGGGGCCAGCAGGTGGAGCGGCAGCAAGAGGAGGGGAAATGGTT
GGTGAGAGAGGAGGGAGAAGAGCAAGCAAGGGAGGAAAAGGGGTAGGAGG
TCTGTAGAAGCACTTTTCCAAGGAGTCATTAAAATTACCGAAATATATCA
AAAATTACTCGCAGTATTCCCCTTGCTTTACTTTACTTTAAAAGTTGGCC
GACCTCAGCGATGATGGCCTGCATTAATTGTTGTAAATTTTCTGGTTTCC
CGGCCCCCGCTGACGCCTCCTCCAAAGCGCTCAGCAACCATCCCTCACGG
ACCAAGGCTTGCTGCGTCTTCTTGAAGCGAGCAAAACTCCCTATGAATGA
TGAAAAAGACGAAGCATGAGTCAAGAGGCGCAGTCTCCGGTGAGATGAGA
AAGAGAAAAAACTTACGTATAGCAACAGCAGCGCGATGAATGAGGTCGCT
ATCCCCACTCGACAGTAAAGTCCTCCATACGCTCAACCCCATTATTGGAA
CTTCCACAATGCCACTGGCCATTTCTGTGTATTAGATTATGTGAGCGAAT
TTGAAGCCTGCTCTGACCATTGAGGAAACCATCATTCTTTCCTTACCTTC
GTCCCCTGACGCTATTGCCAACCCCCCGGCGGCAGCACGTGCGGTGAGAA
GGTCCCCTTCGTAATCTTCTGCCAGAGCCAGCCAAAGCTTGAGTGTATCA
GGATTTCGAAGACTTGCAAGCACATGTGGGTGATAAACCATGTTGCAGAG
GGCCTCGGTGGCTGCTCGTCTGACCAGCAGATGCTCCGAGAATTGCATTG
AGAGCAAGCATTTAAGTCCCTGATTACTGAGGATGGCTTCCACACAGTCT
TCCTCATGGGAAGCAAGATTCGTAAGAGCTAAGAGGGACTCGAATTGCTG
GAGATAAGTTACCATGGGATGGCGGCATAGCCAGAGCAAGCCAGCTATGG
GGGCCAGGCGTTGCCTGTCGGAGAGCATTTTGGGGTTGGTTGTGACTAGA
CACTGAGGAATATGGGGGCAGGGAAAAAGGAAGATTAACAAGGTTTAGGT
TGGAAGATTTGAATGAAAAGAGACCCTAAAAGAGACCACTTTCAGGTAAT
TTACCTTAGCCAGGGCATGCAGCGACTTTATCCGTGTGGTTTCCATCGAC
TTTGCGCCCTTTTTAGCAATGCTTAAGCAAGCATTGTATCCTCCTTCCAG
AATTAGACGTCCCCTCACTTCAGGCACCGTTGCGATTTGCACCAATGCCG
TCACTGCTTGTTCTTGTGCTAAGGGACTTAACCCCTGGAAGGAGAGAAGC
CGACTGAGGGCACGGATGGCGTTGAGGCGGACCAGCTCCTTCACGCGAGA
TTCAACGTCCTCGGGCGGGTCAGCGGCTTCAATGATGTCCACTTCACTTC
CTTCCTGCTGTACGTGCGCACGTCCATGCGTGTGTATGAAGAGTTCGTTA
AAATTTCCTTTAAAAAATGCACAAGAAGACAACTCATGATTGTCTACATT
CCAGTCTTGTCGTACCAGTTGTTGCATCTCCTGGATTTTCCGCAGCTGCT
CGAACTC back to topCoding sequence (CDS) from alignment at scaffold_4:845862..848568+ >mRNA_2117 ID=mRNA_2117|Name=jgi.p|Nanoce1779_2|579146|organism=Nannochloropsis oceanica|type=CDS|length=2907bp|location=Sequence derived from alignment at scaffold_4:845862..848568+ (Nannochloropsis oceanica)
ATGGAGCAGGAGAAGCCACCTGTGCCTGCTGGTGGCCCAATAACCACGGA
CAAGTCTGAGGGCGTATCTAAGAGAGTAGCCAAGCATTTGAGGCGGCAGG
AAATGTGGAAGGTGAAAAAAGCTGCCAAAAAGGAGGCCAAGAAGGCGGCA
CGTGAGGAGGCTAAACGGCAGCAGCAGAAGGATGGTGTAGTTTCAGGCCA
AAAAGATAAAGAAATCGATCCTGTTCTGCAACAAGAGCGACGAGAGCACC
GTTTAATTCAGAGACGTGAGGCACAGGAGGATTTTGTGCGTCGGTGTGCA
GAGGGCGCTAGAGTAGTGGTTGACTGTGGGTTCGACGATCAAATGACCGA
GAAGGAGCTCAAATCTTTAGGGCAACAAGTGATGTATGTCTACGCATCGA
ACAAGCGCGCACCGTCTCCTTGTACCATTTATCTAACGGAGCTGGGGCCT
TCTATGGAAAAACGGTTGTCCGGCTTAGCAGGCACACAAAACTGGCACGG
TTTCGTGCGGGAGCCACGACCCTACGTGGAGGCCTTCGCGGGCGAGCGGG
AGAAGCTTGTGTATCTTACTTCTGACTCTCCAAACAGCTTGACTAAATGG
GACCGAGGCGCAGTTTACATAATCGGCGGCATCGTCGATCGGAACCGGCT
CAAGAGGGTGACCTATGAGAAGGCTCTGGTGCAAGGCATTGTCACGGCTC
GATTTCCTTTGCAGGAGTACGTGACCCTAGGGAGCACGCCGGTGTTGACT
GTGAATCATGTTTTTGACATTTTGCTCGAGTTCCAGCACACTAACGACTG
GCGCGCTGCTTTTGCCAAGGTCTTACCGCAACGGAAAGGTTTAAACTTGA
GGACATCATCGGAGGCTGATGGTGGTATGGGGGGCCAGCAGGTGGAGCGG
CAGCAAGAGGAGGGGAAATGGTTGGTGAGAGAGGAGGGAGAAGAGCAAGC
AAGGGAGGAAAAGGGGTAGATGGAGCAGGAGAAGCCACCTGTGCCTGCTG
GTGGCCCAATAACCACGGACAAGTCTGAGGGCGTATCTAAGAGAGTAGCC
AAGCATTTGAGGCGGCAGGAAATGTGGAAGGTGAAAAAAGCTGCCAAAAA
GGAGGCCAAGAAGGCGGCACGTGAGGAGGCTAAACGGCAGCAGCAGAAGG
ATGGTGTAGTTTCAGGCCAAAAAGATAAAGAAATCGATCCTGTTCTGCAA
CAAGAGCGACGAGAGCACCGTTTAATTCAGAGACGTGAGGCACAGGAGGA
TTTTGTGCGTCGGTGTGCAGAGGGCGCTAGAGTAGTGGTTGACTGTGGGT
TCGACGATCAAATGACCGAGAAGGAGCTCAAATCTTTAGGGCAACAAGTG
ATGTATGTCTACGCATCGAACAAGCGCGCACCGTCTCCTTGTACCATTTA
TCTAACGGAGCTGGGGCCTTCTATGGAAAAACGGTTGTCCGGCTTAGCAG
GCACACAAAACTGGCACGGTTTCGTGCGGGAGCCACGACCCTACGTGGAG
GCCTTCGCGGGCGAGCGGGAGAAGCTTGTGTATCTTACTTCTGACTCTCC
AAACAGCTTGACTAAATGGGACCGAGGCGCAGTTTACATAATCGGCGGCA
TCGTCGATCGGAACCGGCTCAAGAGGGTGACCTATGAGAAGGCTCTGGTG
CAAGGCATTGTCACGGCTCGATTTCCTTTGCAGGAGTACGTGACCCTAGG
GAGCACGCCGGTGTTGACTGTGAATCATGTTTTTGACATTTTGCTCGAGT
TCCAGCACACTAACGACTGGCGCGCTGCTTTTGCCAAGGTCTTACCGCAA
CGGAAAGGTTTAAACTTGAGGACATCATCGGAGGCTGATGGTGGTATGGG
GGGCCAGCAGGTGGAGCGGCAGCAAGAGGAGGGGAAATGGTTGGTGAGAG
AGGAGGGAGAAGAGCAAGCAAGGGAGGAAAAGGGGTAGATGGAGCAGGAG
AAGCCACCTGTGCCTGCTGGTGGCCCAATAACCACGGACAAGTCTGAGGG
CGTATCTAAGAGAGTAGCCAAGCATTTGAGGCGGCAGGAAATGTGGAAGG
TGAAAAAAGCTGCCAAAAAGGAGGCCAAGAAGGCGGCACGTGAGGAGGCT
AAACGGCAGCAGCAGAAGGATGGTGTAGTTTCAGGCCAAAAAGATAAAGA
AATCGATCCTGTTCTGCAACAAGAGCGACGAGAGCACCGTTTAATTCAGA
GACGTGAGGCACAGGAGGATTTTGTGCGTCGGTGTGCAGAGGGCGCTAGA
GTAGTGGTTGACTGTGGGTTCGACGATCAAATGACCGAGAAGGAGCTCAA
ATCTTTAGGGCAACAAGTGATGTATGTCTACGCATCGAACAAGCGCGCAC
CGTCTCCTTGTACCATTTATCTAACGGAGCTGGGGCCTTCTATGGAAAAA
CGGTTGTCCGGCTTAGCAGGCACACAAAACTGGCACGGTTTCGTGCGGGA
GCCACGACCCTACGTGGAGGCCTTCGCGGGCGAGCGGGAGAAGCTTGTGT
ATCTTACTTCTGACTCTCCAAACAGCTTGACTAAATGGGACCGAGGCGCA
GTTTACATAATCGGCGGCATCGTCGATCGGAACCGGCTCAAGAGGGTGAC
CTATGAGAAGGCTCTGGTGCAAGGCATTGTCACGGCTCGATTTCCTTTGC
AGGAGTACGTGACCCTAGGGAGCACGCCGGTGTTGACTGTGAATCATGTT
TTTGACATTTTGCTCGAGTTCCAGCACACTAACGACTGGCGCGCTGCTTT
TGCCAAGGTCTTACCGCAACGGAAAGGTTTAAACTTGAGGACATCATCGG
AGGCTGATGGTGGTATGGGGGGCCAGCAGGTGGAGCGGCAGCAAGAGGAG
GGGAAATGGTTGGTGAGAGAGGAGGGAGAAGAGCAAGCAAGGGAGGAAAA
GGGGTAG back to top
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