jgi.p|Nanoce1779_2|579124, mRNA_2115 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579124
Unique Name	mRNA_2115
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1495
Alignment location	scaffold_4:842449..844074 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579210
Track	FilteredModels2
ProteinId	579124

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:842449..844074 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579124	gene_2115	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579124	mRNA_2115-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2115	CDS_2115	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:842449..844074+
coding sequence from alignment at scaffold_4:842449..844074+

mRNA sequence

>mRNA_2115 ID=mRNA_2115|Name=jgi.p|Nanoce1779_2|579124|organism=Nannochloropsis oceanica|type=mRNA|length=1495bp
ACAGGTGATGACCGGCTCGCGGCGGTCTCTCTGTGGTATTTTACTAACCC
TACTCCTGGCCTCGCTTCTCAAGCTGGTGATGAGCACCGCGACACCTGCC
AAGCGACGCTGGGTTGAACCGCTTCCTCCGGCCACATCTTCCCATTCACA
ACCCGCGTTGCCCGACGTTGACGAGGAGAACGAGAAGGTGACAGGTGAGG
CGGTTGTCCAGCTGGCAGAAGCGCTCATCAATATAGAATCCTTGTCTGGA
CGCGAGCATGCGATGGCGCATGCCTTGAAAGGATGGTTGAACAAGCGGGG
ATGGGAAGTTACCCTCCAGCCCGTCGCGGCCGCCGCTGGCCATGAGAAAG
AGGGCGATCGCTGGAATGTCTATGCCTTCCGTCCCGGAGATGAATCCGCT
GAAGCGTCACACCGGCACGGCAAAGGTTCACGCGTTCTGCTTAATACACA
CATTGATACCGTCCCGCCCTTTTATCCAGCAACCGTCGACAAAAAAGAGG
GCGTGATCCGCGGCCGGGGCGCGTGCGACACGAAAAGCATTTTGGCAGCA
CAGTTACTCGCGGCACAACGTTTAGTCAGAGCCGGAAAAGCTGATGATCT
GGGACTGCTCTACGTAGTGTCTGAGGAGACAGATCACAGCGGGATGAAAC
GTGCGAACGCCCTTGGACTGCGCCCTCAGTACTTAATCGTAGGAGAACCC
ACTGAGTCCAAGATGATCCGGTCCCAAAAGGGGATTTTGAAGCTAAAGCT
CCTATCGCAAGGCGTATCCTGTCATAGCGGTTATCCGAAACTCGGGAAGT
CTGCGATTGACCCACTCATCGATGCCCTCCACGAGCTCAAGCACGCGCAC
TGGCCGCAAAGCGAAGAGCTGGGCTCCACCACTCTCAATATTGGTCTCTT
GCGAGGCGGACATGCAGCAAACGCCTTGGCAGCCGAAGCGGAGGCCACCC
TGATGTTCCGCGTCATTTCCCCGCCAGAGCAGATTCTGGAGACCGTGCAA
GCGACGGTGGGAGAAAGGGCGGGGGTTGAGGTTATCACCGCCAACAACCC
TCTCAAGTTGGGCACGCTGTCTGGGTACCAAACAGACGTCGCAAGCTTTA
ACACGGACATTGCCTATTTTGACTTAACCGAATCTGGGGCCAAGGCCTTT
TTGATCGGCCCTGGTTCTATTCTGGACGCGCATAGTGACCATGAGCTTAT
TCGCATCTCCGAGCTCCAGCGGGCGGTAGACTACTATGAGGAGCTGCTGT
TGCGTCTCCTCCAGAGTAGCGGCAGCAGTAGCAACGGCAGCGGCGTGCTA
GAGGGGCATGCGGGGGAAGGAAAGGACACGGATAAAGGAAGAGAACGGAA
GGAAACTCAAAAGTGAGCGAGAAATAAAGCACAGCAGGACAGTTTTGATT
GTCTCATATTGAGTGATAGAAGGAGGATGATTAGAGGAAAGGGAAATGAG
AAGACAAATATGAAGATATGAAATCAAAACGATAGATACTCGGCA

protein sequence of jgi.p|Nanoce1779_2|579124

>mRNA_2115-protein ID=mRNA_2115-protein|Name=jgi.p|Nanoce1779_2|579124|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MTGSRRSLCGILLTLLLASLLKLVMSTATPAKRRWVEPLPPATSSHSQPA
LPDVDEENEKVTGEAVVQLAEALINIESLSGREHAMAHALKGWLNKRGWE
VTLQPVAAAAGHEKEGDRWNVYAFRPGDESAEASHRHGKGSRVLLNTHID
TVPPFYPATVDKKEGVIRGRGACDTKSILAAQLLAAQRLVRAGKADDLGL
LYVVSEETDHSGMKRANALGLRPQYLIVGEPTESKMIRSQKGILKLKLLS
QGVSCHSGYPKLGKSAIDPLIDALHELKHAHWPQSEELGSTTLNIGLLRG
GHAANALAAEAEATLMFRVISPPEQILETVQATVGERAGVEVITANNPLK
LGTLSGYQTDVASFNTDIAYFDLTESGAKAFLIGPGSILDAHSDHELIRI
SELQRAVDYYEELLLRLLQSSGSSSNGSGVLEGHAGEGKDTDKGRERKET
QK*

mRNA from alignment at scaffold_4:842449..844074+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2115 ID=mRNA_2115|Name=jgi.p|Nanoce1779_2|579124|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp|location=Sequence derived from alignment at scaffold_4:842449..844074+ (Nannochloropsis oceanica)
ACAGGTGATGACCGGCTCGCGGCGGTCTCTCTGTGGTATTTTACTAACCC
TACTCCTGGCCTCGCTTCTCAAGCTGGTGATGAGCACCGCGACACCTGCC
AAGCGACGCTGGGTTGAACCGCTTCCTCCGGCCACATCTTCCCATTCACA
ACCCGCGTTGCCCGACGTTGACGAGGAGAACGAGAAGGTGACAGGTGAGG
CGGTTGTCCAGCTGGCAGAAGCGCTCATCAATATAGAATCCTTGTCTGGA
CGCGAGCATGCGATGGCGCATGCCTTGAAAGGATGGTTGAACAAGCGGGG
ATGGGAAGTTACCCTCCAGCCCGTCGCGGCCGCCGCTGGCCATGAGAAAG
AGGTGAGGGAGAAGTGGATTAGAGAAAGTATTTCCCCCTGTAATGACTTC
GCGCAGCGTACTTTGTAACGCCTTGTACAGGGAAATCTAAACTCTGCAAC
CCTGCCTTTCACACACGCACCATACGCATGCAGGGCGATCGCTGGAATGT
CTATGCCTTCCGTCCCGGAGATGAATCCGCTGAAGCGTCACACCGGCACG
GCAAAGGTTCACGCGTTCTGCTTAATACACACATTGATACCGTCCCGCCC
TTTTATCCAGCAACCGTCGACAAAAAAGAGGGCGTGATCCGCGGCCGGGG
CGCGTGCGACACGAAAAGCATTTTGGCAGCACAGTTACTCGCGGCACAAC
GTTTAGTCAGAGCCGGAAAAGCTGATGATCTGGGACTGCTCTACGTAGTG
TCTGAGGAGACAGATCACAGCGGGATGAAACGTGCGAACGCCCTTGGACT
GCGCCCTCAGTACTTAATCGTAGGAGAACCCACTGAGTCCAAGATGATCC
GGTCCCAAAAGGGGATTTTGAAGCTAAAGCTCCTATCGCAAGGCGTATCC
TGTCATAGCGGTTATCCGAAACTCGGGAAGTCTGCGATTGACCCACTCAT
CGATGCCCTCCACGAGCTCAAGCACGCGCACTGGCCGCAAAGCGAAGAGC
TGGGCTCCACCACTCTCAATATTGGTCTCTTGCGAGGCGGACATGCAGCA
AACGCCTTGGCAGCCGAAGCGGAGGCCACCCTGATGTTCCGCGTCATTTC
CCCGCCAGAGCAGATTCTGGAGACCGTGCAAGCGACGGTGGGAGAAAGGG
CGGGGGTTGAGGTTATCACCGCCAACAACCCTCTCAAGTTGGGCACGCTG
TCTGGGTACCAAACAGACGTCGCAAGCTTTAACACGGACATTGCCTATTT
TGACTTAACCGAATCTGGGGCCAAGGCCTTTTTGATCGGCCCTGGTTCTA
TTCTGGACGCGCATAGTGACCATGAGCTTATTCGCATCTCCGAGCTCCAG
CGGGCGGTAGACTACTATGAGGAGCTGCTGTTGCGTCTCCTCCAGAGTAG
CGGCAGCAGTAGCAACGGCAGCGGCGTGCTAGAGGGGCATGCGGGGGAAG
GAAAGGACACGGATAAAGGAAGAGAACGGAAGGAAACTCAAAAGTGAGCG
AGAAATAAAGCACAGCAGGACAGTTTTGATTGTCTCATATTGAGTGATAG
AAGGAGGATGATTAGAGGAAAGGGAAATGAGAAGACAAATATGAAGATAT
GAAATCAAAACGATAGATACTCGGCA

Coding sequence (CDS) from alignment at scaffold_4:842449..844074+

>mRNA_2115 ID=mRNA_2115|Name=jgi.p|Nanoce1779_2|579124|organism=Nannochloropsis oceanica|type=CDS|length=2718bp|location=Sequence derived from alignment at scaffold_4:842449..844074+ (Nannochloropsis oceanica)
ATGACCGGCTCGCGGCGGTCTCTCTGTGGTATTTTACTAACCCTACTCCT
GGCCTCGCTTCTCAAGCTGGTGATGAGCACCGCGACACCTGCCAAGCGAC
GCTGGGTTGAACCGCTTCCTCCGGCCACATCTTCCCATTCACAACCCGCG
TTGCCCGACGTTGACGAGGAGAACGAGAAGGTGACAGGTGAGGCGGTTGT
CCAGCTGGCAGAAGCGCTCATCAATATAGAATCCTTGTCTGGACGCGAGC
ATGCGATGGCGCATGCCTTGAAAGGATGGTTGAACAAGCGGGGATGGGAA
GTTACCCTCCAGCCCGTCGCGGCCGCCGCTGGCCATGAGAAAGAGGGCGA
TCGCTGGAATGTCTATGCCTTCCGTCCCGGAGATGAATCCGCTGAAGCGT
CACACCGGCACGGCAAAGGTTCACGCGTTCTGCTTAATACACACATTGAT
ACCGTCCCGCCCTTTTATCCAGCAACCGTCGACAAAAAAGAGGGCGTGAT
CCGCGGCCGGGGCGCGTGCGACACGAAAAGCATTTTGGCAGCACAGTTAC
TCGCGGCACAACGTTTAGTCAGAGCCGGAAAAGCTGATGATCTGGGACTG
CTCTACGTAGTGTCTGAGGAGACAGATCACAGCGGGATGAAACGTGCGAA
CGCCCTTGGACTGCGCCCTCAGTACTTAATCGTAGGAGAACCCACTGAGT
CCAAGATGATCCGGTCCCAAAAGGGGATTTTGAAGCTAAAGCTCCTATCG
CAAGGCGTATCCTGTCATAGCGGTTATCCGAAACTCGGGAAGTCTGCGAT
TGACCCACTCATCGATGCCCTCCACGAGCTCAAGCACGCGCACTGGCCGC
AAAGCGAAGAGCTGGGCTCCACCACTCTCAATATTGGTCTCTTGCGAGGC
GGACATGCAGCAAACGCCTTGGCAGCCGAAGCGGAGGCCACCCTGATGTT
CCGCGTCATTTCCCCGCCAGAGCAGATTCTGGAGACCGTGCAAGCGACGG
TGGGAGAAAGGGCGGGGGTTGAGGTTATCACCGCCAACAACCCTCTCAAG
TTGGGCACGCTGTCTGGGTACCAAACAGACGTCGCAAGCTTTAACACGGA
CATTGCCTATTTTGACTTAACCGAATCTGGGGCCAAGGCCTTTTTGATCG
GCCCTGGTTCTATTCTGGACGCGCATAGTGACCATGAGCTTATTCGCATC
TCCGAGCTCCAGCGGGCGGTAGACTACTATGAGGAGCTGCTGTTGCGTCT
CCTCCAGAGTAGCGGCAGCAGTAGCAACGGCAGCGGCGTGCTAGAGGGGC
ATGCGGGGGAAGGAAAGGACACGGATAAAGGAAGAGAACGGAAGGAAACT
CAAAAGTGAATGACCGGCTCGCGGCGGTCTCTCTGTGGTATTTTACTAAC
CCTACTCCTGGCCTCGCTTCTCAAGCTGGTGATGAGCACCGCGACACCTG
CCAAGCGACGCTGGGTTGAACCGCTTCCTCCGGCCACATCTTCCCATTCA
CAACCCGCGTTGCCCGACGTTGACGAGGAGAACGAGAAGGTGACAGGTGA
GGCGGTTGTCCAGCTGGCAGAAGCGCTCATCAATATAGAATCCTTGTCTG
GACGCGAGCATGCGATGGCGCATGCCTTGAAAGGATGGTTGAACAAGCGG
GGATGGGAAGTTACCCTCCAGCCCGTCGCGGCCGCCGCTGGCCATGAGAA
AGAGGGCGATCGCTGGAATGTCTATGCCTTCCGTCCCGGAGATGAATCCG
CTGAAGCGTCACACCGGCACGGCAAAGGTTCACGCGTTCTGCTTAATACA
CACATTGATACCGTCCCGCCCTTTTATCCAGCAACCGTCGACAAAAAAGA
GGGCGTGATCCGCGGCCGGGGCGCGTGCGACACGAAAAGCATTTTGGCAG
CACAGTTACTCGCGGCACAACGTTTAGTCAGAGCCGGAAAAGCTGATGAT
CTGGGACTGCTCTACGTAGTGTCTGAGGAGACAGATCACAGCGGGATGAA
ACGTGCGAACGCCCTTGGACTGCGCCCTCAGTACTTAATCGTAGGAGAAC
CCACTGAGTCCAAGATGATCCGGTCCCAAAAGGGGATTTTGAAGCTAAAG
CTCCTATCGCAAGGCGTATCCTGTCATAGCGGTTATCCGAAACTCGGGAA
GTCTGCGATTGACCCACTCATCGATGCCCTCCACGAGCTCAAGCACGCGC
ACTGGCCGCAAAGCGAAGAGCTGGGCTCCACCACTCTCAATATTGGTCTC
TTGCGAGGCGGACATGCAGCAAACGCCTTGGCAGCCGAAGCGGAGGCCAC
CCTGATGTTCCGCGTCATTTCCCCGCCAGAGCAGATTCTGGAGACCGTGC
AAGCGACGGTGGGAGAAAGGGCGGGGGTTGAGGTTATCACCGCCAACAAC
CCTCTCAAGTTGGGCACGCTGTCTGGGTACCAAACAGACGTCGCAAGCTT
TAACACGGACATTGCCTATTTTGACTTAACCGAATCTGGGGCCAAGGCCT
TTTTGATCGGCCCTGGTTCTATTCTGGACGCGCATAGTGACCATGAGCTT
ATTCGCATCTCCGAGCTCCAGCGGGCGGTAGACTACTATGAGGAGCTGCT
GTTGCGTCTCCTCCAGAGTAGCGGCAGCAGTAGCAACGGCAGCGGCGTGC
TAGAGGGGCATGCGGGGGAAGGAAAGGACACGGATAAAGGAAGAGAACGG
AAGGAAACTCAAAAGTGA

Synonyms

Publications