jgi.p|Nanoce1779_2|579116, mRNA_2114 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579116
Unique Name	mRNA_2114
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1392
Alignment location	scaffold_4:840424..842156 -

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Properties


Property Name	Value
TranscriptId	579202
Track	FilteredModels2
ProteinId	579116

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:840424..842156 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579116	gene_2114	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579116	mRNA_2114-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2114	CDS_2114	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:840424..842156-
coding sequence from alignment at scaffold_4:840424..842156-

mRNA sequence

>mRNA_2114 ID=mRNA_2114|Name=jgi.p|Nanoce1779_2|579116|organism=Nannochloropsis oceanica|type=mRNA|length=1392bp
CGGCAAGTGATTGGCCTCTTTTTGTGGTTGGCGGGCTGTAGCAGTGCGTT
CAAGGCCCGTACCAAGCTCCAAAGCAGCTCCCACATCCAGCGCCTTCCCT
CAGTCTGCACACATCATCACGGACCTCAACATATACTTGGACACCTCCAT
CAACAAAACTTCCGCGACAAGTACCAAATCGAGGAGAAACCCGGCGATGC
TCCTTTCCTAGACCTCTCCGGTCCCCCTTCCTCATCGGTCCCCGACACTT
TTCTTTTATGGCTTGATTTGCTGATACCTGGTTCTTGCTTCGCCTTGACC
CTCGTCGCATTATGCCTAGTGGACACGGCCGTCATGGACTGTTGGCCGGC
ACCCGCTAATGCCGCGGCGGTGGGCGTGGCAATTACAGATATGTCCTCAG
TCAAAGATCTTGACGTTTCCGATATTTTGCAAAAAGCGGGCAGAAAGGCG
ATAGGGGGCGGCTTGTCAGGAGCAGCAGCGTCCCTTGTGCAGCTCGTGAC
GTTAATGTGGCTGAGGACGACGATGCAATTCCAGTATAGATATGGCTTCT
CCTTCAAGGAATCATTGGTGAAACTTTACAAAGAGGGCGGACTTCCTCGA
TTTTATCGAGGCTTGCCGGTGGCGACGTTGCAACTCCCTCTCTCTCGTTT
TGGTGATGTGGCAGCCAATGCCTTTATGCTTCTTGCCCTGGATTCGTTCG
ACTCGACCCGCGGTCTGCCCCTACCAGTCAAGAGTATCTTTGGCAGTCTC
GCGGCTGGGGCTTTCCGCTTTATGCTTATGCCATTGGATGCCGTCAAGAC
CTCTTTGCAAGTACAAGGTTCAAAAGGTTGGTCTCAGGTCAAGGCACGCC
TGCAAGAGGAAGGGGTCTCCTCCCTATATCAAGGCGCGGTCGCTCAAGCT
GTAGCTACTTTTGTCGGCCATTGGCCCTTTTTTGTGACATTCAACTACAT
GTCCTCCGTGATTTTGCTTCCACCCGCCGACGCTGTCTTTCTGCGATTGG
GAAGGAATGCCATTCTAGGCTTGTGCTCCTCCACGGTGTCGGACATGTGT
TCCAATAGCTTTCGGGTCATCAAAACCACCAAACAAACATCCGAATCGCA
AATTACCTACCGGGAGGCCTTGCGCCAGGTGCTGGACCAAGATGGTGTCA
AGGGGTTGTTTGGCCGAGGCTTGCAGACGAGGCTGGCGGCCAATGCGCTG
CAGGGGATGATATTTTCGGTTGTTTGGAGGTATCTAGAAGAGTCGCAAAT
TCTGTTTGGGGGGAAATGAGTATATAATGGAGGCAAGGTGAAGTGTAATT
GTGGTGAACACCGTGGATTGGTTGTGCAGAGGCGTGGAGATTAGAAAATA
TGGGAGCTATAAGAACAGATAAAATTAAGCCACATTTAATCA

protein sequence of jgi.p|Nanoce1779_2|579116

>mRNA_2114-protein ID=mRNA_2114-protein|Name=jgi.p|Nanoce1779_2|579116|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MDCWPAPANAAAVGVAITDMSSVKDLDVSDILQKAGRKAIGGGLSGAAAS
LVQLVTLMWLRTTMQFQYRYGFSFKESLVKLYKEGGLPRFYRGLPVATLQ
LPLSRFGDVAANAFMLLALDSFDSTRGLPLPVKSIFGSLAAGAFRFMLMP
LDAVKTSLQVQGSKGWSQVKARLQEEGVSSLYQGAVAQAVATFVGHWPFF
VTFNYMSSVILLPPADAVFLRLGRNAILGLCSSTVSDMCSNSFRVIKTTK
QTSESQITYREALRQVLDQDGVKGLFGRGLQTRLAANALQGMIFSVVWRY
LEESQILFGGK*

mRNA from alignment at scaffold_4:840424..842156-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2114 ID=mRNA_2114|Name=jgi.p|Nanoce1779_2|579116|organism=Nannochloropsis oceanica|type=mRNA|length=1733bp|location=Sequence derived from alignment at scaffold_4:840424..842156- (Nannochloropsis oceanica)
CGGCAAGTGATTGGCCTCTTTTTGTGGTTGGCGGGCTGTAGCAGTGCGTT
CAAGGCCCGTACCAAGCTCCAAAGCAGCTCCCACATCCAGCGCCTTCCCT
CAGTCTGCACACATCATCACGGACCTCAACATATACTTGGACACCTCCAT
CAACAAAACTTCCGCGACAAGTACCAAATCGAGGAGAAACCCGGCGATGC
TCCTTTCCTAGACCTCTCCGGTCCCCCTTCCTCATCGGTCCCCGACACTT
TTCTTTTATGGCTTGATTTGCTGATACCTGGTTCTTGCTTCGCCTTGACC
CTCGTCGCATTATGCCTAGTGGACACGGCCGTCATGGACTGTTGGCCGGC
ACCCGCTAATGCCGCGGCGGTGGGCGTGGCAATTACAGATATGTCCTCAG
TCAAAGATCTTGACGTTTCCGATATTTTGCAAAAAGCGGGCAGAAAGGCG
ATAGGGGGCGGCTTGTCAGGAGCAGCAGCGTCCCTTGTGCAGCTCGTGAC
GTTAATGTGGCTGAGGACGACGATGCAATTCCAGTATAGATATGGCTTCT
CCTTCAAGGAATCATTGGTGAAACTTTACAAAGAGGGCGGACTTCCTCGA
TTTTATCGAGGCTTGCCGGTGGCGACGTTGCAACTCCCTCTCTCTCGTTT
TGGTGATGTGGCAGCCAATGCCTTTATGCTTCTTGCCCTGGATTCGTTCG
ACTCGACCCGCGGTCTGCCCCTACCAGTCAAGAGTATCTTTGGCAGTCTC
GCGGCTGGGGCTTTCCGCTTTATGCTTATGCCATTGGATGCCGTCAAGAC
CTCTTTGCAAGTATGTAACGCAGCCATTCCGTTTCATATCATAATCTTGG
TAGCCCCTTTGTTTTGCTCGGTTCCCCTTCATCTAGCAATTCTACCAACA
ATTGGGTCGTCATTTTCCCACAATATTTTCAACCAGGTACAAGGTTCAAA
AGGTTGGTCTCAGGTCAAGGCACGCCTGCAAGAGGAAGGGGTCTCCTCCC
TATATCAAGGCGCGGTCGCTCAAGCTGTAGCTACTTTTGTCGGCCATTGG
CCCTTTTTTGTGACATTCAACTACATGTCCTCCGTGATTTTGCTTCCACC
CGCCGACGCTGTCTTTCTGCGATTGGGAAGGAATGCCATTCTAGGTAAAG
ATGATAAATTTAGAAGTGGACTTTTGCATCTTTTGTTAGCAGCAAATCAA
AAGCAAGAGCATTCTTCTTACTACGTACTTTTTTCTTTCATGGACCTACA
GGCTTGTGCTCCTCCACGGTGTCGGACATGTGTTCCAATAGCTTTCGGGT
CATCAAAACCACCAAACAAACATCCGAATCGCAAATTACCTACCGGGAGG
CCTTGCGCCAGGTGCTGGACCAAGATGGTGTCAAGGGGTTGTTTGGCCGA
GGCTTGCAGACGAGGTGTGGATGCAGGAAAGGATAAGTGGGCTGATGGTC
ATGTCTGTGCAGGACTCTGCAATCACAATAATTTTCATCTCCGCAAATAC
ATTCATTTTAATACATGCACAGGCTGGCGGCCAATGCGCTGCAGGGGATG
ATATTTTCGGTTGTTTGGAGGTATCTAGAAGAGTCGCAAATTCTGTTTGG
GGGGAAATGAGTATATAATGGAGGCAAGGTGAAGTGTAATTGTGGTGAAC
ACCGTGGATTGGTTGTGCAGAGGCGTGGAGATTAGAAAATATGGGAGCTA
TAAGAACAGATAAAATTAAGCCACATTTAATCA

Coding sequence (CDS) from alignment at scaffold_4:840424..842156-

>mRNA_2114 ID=mRNA_2114|Name=jgi.p|Nanoce1779_2|579116|organism=Nannochloropsis oceanica|type=CDS|length=3744bp|location=Sequence derived from alignment at scaffold_4:840424..842156- (Nannochloropsis oceanica)
GCTGGCGGCCAATGCGCTGCAGGGGATGATATTTTCGGTTGTTTGGAGGT
ATCTAGAAGAGTCGCAAATTCTGTTTGGGGGGAAATGAGCTTGTGCTCCT
CCACGGTGTCGGACATGTGTTCCAATAGCTTTCGGGTCATCAAAACCACC
AAACAAACATCCGAATCGCAAATTACCTACCGGGAGGCCTTGCGCCAGGT
GCTGGACCAAGATGGTGTCAAGGGGTTGTTTGGCCGAGGCTTGCAGACGA
GGTACAAGGTTCAAAAGGTTGGTCTCAGGTCAAGGCACGCCTGCAAGAGG
AAGGGGTCTCCTCCCTATATCAAGGCGCGGTCGCTCAAGCTGTAGCTACT
TTTGTCGGCCATTGGCCCTTTTTTGTGACATTCAACTACATGTCCTCCGT
GATTTTGCTTCCACCCGCCGACGCTGTCTTTCTGCGATTGGGAAGGAATG
CCATTCTAGATGGACTGTTGGCCGGCACCCGCTAATGCCGCGGCGGTGGG
CGTGGCAATTACAGATATGTCCTCAGTCAAAGATCTTGACGTTTCCGATA
TTTTGCAAAAAGCGGGCAGAAAGGCGATAGGGGGCGGCTTGTCAGGAGCA
GCAGCGTCCCTTGTGCAGCTCGTGACGTTAATGTGGCTGAGGACGACGAT
GCAATTCCAGTATAGATATGGCTTCTCCTTCAAGGAATCATTGGTGAAAC
TTTACAAAGAGGGCGGACTTCCTCGATTTTATCGAGGCTTGCCGGTGGCG
ACGTTGCAACTCCCTCTCTCTCGTTTTGGTGATGTGGCAGCCAATGCCTT
TATGCTTCTTGCCCTGGATTCGTTCGACTCGACCCGCGGTCTGCCCCTAC
CAGTCAAGAGTATCTTTGGCAGTCTCGCGGCTGGGGCTTTCCGCTTTATG
CTTATGCCATTGGATGCCGTCAAGACCTCTTTGCAAGCTGGCGGCCAATG
CGCTGCAGGGGATGATATTTTCGGTTGTTTGGAGGTATCTAGAAGAGTCG
CAAATTCTGTTTGGGGGGAAATGAGCTTGTGCTCCTCCACGGTGTCGGAC
ATGTGTTCCAATAGCTTTCGGGTCATCAAAACCACCAAACAAACATCCGA
ATCGCAAATTACCTACCGGGAGGCCTTGCGCCAGGTGCTGGACCAAGATG
GTGTCAAGGGGTTGTTTGGCCGAGGCTTGCAGACGAGGTACAAGGTTCAA
AAGGTTGGTCTCAGGTCAAGGCACGCCTGCAAGAGGAAGGGGTCTCCTCC
CTATATCAAGGCGCGGTCGCTCAAGCTGTAGCTACTTTTGTCGGCCATTG
GCCCTTTTTTGTGACATTCAACTACATGTCCTCCGTGATTTTGCTTCCAC
CCGCCGACGCTGTCTTTCTGCGATTGGGAAGGAATGCCATTCTAGATGGA
CTGTTGGCCGGCACCCGCTAATGCCGCGGCGGTGGGCGTGGCAATTACAG
ATATGTCCTCAGTCAAAGATCTTGACGTTTCCGATATTTTGCAAAAAGCG
GGCAGAAAGGCGATAGGGGGCGGCTTGTCAGGAGCAGCAGCGTCCCTTGT
GCAGCTCGTGACGTTAATGTGGCTGAGGACGACGATGCAATTCCAGTATA
GATATGGCTTCTCCTTCAAGGAATCATTGGTGAAACTTTACAAAGAGGGC
GGACTTCCTCGATTTTATCGAGGCTTGCCGGTGGCGACGTTGCAACTCCC
TCTCTCTCGTTTTGGTGATGTGGCAGCCAATGCCTTTATGCTTCTTGCCC
TGGATTCGTTCGACTCGACCCGCGGTCTGCCCCTACCAGTCAAGAGTATC
TTTGGCAGTCTCGCGGCTGGGGCTTTCCGCTTTATGCTTATGCCATTGGA
TGCCGTCAAGACCTCTTTGCAAGCTGGCGGCCAATGCGCTGCAGGGGATG
ATATTTTCGGTTGTTTGGAGGTATCTAGAAGAGTCGCAAATTCTGTTTGG
GGGGAAATGAGCTTGTGCTCCTCCACGGTGTCGGACATGTGTTCCAATAG
CTTTCGGGTCATCAAAACCACCAAACAAACATCCGAATCGCAAATTACCT
ACCGGGAGGCCTTGCGCCAGGTGCTGGACCAAGATGGTGTCAAGGGGTTG
TTTGGCCGAGGCTTGCAGACGAGGTACAAGGTTCAAAAGGTTGGTCTCAG
GTCAAGGCACGCCTGCAAGAGGAAGGGGTCTCCTCCCTATATCAAGGCGC
GGTCGCTCAAGCTGTAGCTACTTTTGTCGGCCATTGGCCCTTTTTTGTGA
CATTCAACTACATGTCCTCCGTGATTTTGCTTCCACCCGCCGACGCTGTC
TTTCTGCGATTGGGAAGGAATGCCATTCTAGATGGACTGTTGGCCGGCAC
CCGCTAATGCCGCGGCGGTGGGCGTGGCAATTACAGATATGTCCTCAGTC
AAAGATCTTGACGTTTCCGATATTTTGCAAAAAGCGGGCAGAAAGGCGAT
AGGGGGCGGCTTGTCAGGAGCAGCAGCGTCCCTTGTGCAGCTCGTGACGT
TAATGTGGCTGAGGACGACGATGCAATTCCAGTATAGATATGGCTTCTCC
TTCAAGGAATCATTGGTGAAACTTTACAAAGAGGGCGGACTTCCTCGATT
TTATCGAGGCTTGCCGGTGGCGACGTTGCAACTCCCTCTCTCTCGTTTTG
GTGATGTGGCAGCCAATGCCTTTATGCTTCTTGCCCTGGATTCGTTCGAC
TCGACCCGCGGTCTGCCCCTACCAGTCAAGAGTATCTTTGGCAGTCTCGC
GGCTGGGGCTTTCCGCTTTATGCTTATGCCATTGGATGCCGTCAAGACCT
CTTTGCAAGCTGGCGGCCAATGCGCTGCAGGGGATGATATTTTCGGTTGT
TTGGAGGTATCTAGAAGAGTCGCAAATTCTGTTTGGGGGGAAATGAGCTT
GTGCTCCTCCACGGTGTCGGACATGTGTTCCAATAGCTTTCGGGTCATCA
AAACCACCAAACAAACATCCGAATCGCAAATTACCTACCGGGAGGCCTTG
CGCCAGGTGCTGGACCAAGATGGTGTCAAGGGGTTGTTTGGCCGAGGCTT
GCAGACGAGGTACAAGGTTCAAAAGGTTGGTCTCAGGTCAAGGCACGCCT
GCAAGAGGAAGGGGTCTCCTCCCTATATCAAGGCGCGGTCGCTCAAGCTG
TAGCTACTTTTGTCGGCCATTGGCCCTTTTTTGTGACATTCAACTACATG
TCCTCCGTGATTTTGCTTCCACCCGCCGACGCTGTCTTTCTGCGATTGGG
AAGGAATGCCATTCTAGATGGACTGTTGGCCGGCACCCGCTAATGCCGCG
GCGGTGGGCGTGGCAATTACAGATATGTCCTCAGTCAAAGATCTTGACGT
TTCCGATATTTTGCAAAAAGCGGGCAGAAAGGCGATAGGGGGCGGCTTGT
CAGGAGCAGCAGCGTCCCTTGTGCAGCTCGTGACGTTAATGTGGCTGAGG
ACGACGATGCAATTCCAGTATAGATATGGCTTCTCCTTCAAGGAATCATT
GGTGAAACTTTACAAAGAGGGCGGACTTCCTCGATTTTATCGAGGCTTGC
CGGTGGCGACGTTGCAACTCCCTCTCTCTCGTTTTGGTGATGTGGCAGCC
AATGCCTTTATGCTTCTTGCCCTGGATTCGTTCGACTCGACCCGCGGTCT
GCCCCTACCAGTCAAGAGTATCTTTGGCAGTCTCGCGGCTGGGGCTTTCC
GCTTTATGCTTATGCCATTGGATGCCGTCAAGACCTCTTTGCAA

Synonyms

Publications