Properties
| Property Name | Value |
|---|
| TranscriptId | 579201 |
| Track | FilteredModels2 |
| ProteinId | 579115 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:838906..840406 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2113 ID=mRNA_2113|Name=jgi.p|Nanoce1779_2|579115|organism=Nannochloropsis oceanica|type=mRNA|length=1501bp
AGGCGAGAAACTAGCCGCGACAAGGTATTACTACATTTTCAATTAGACAA
CACTATTCAAGTCAACAAACAAAGCTGCGAGCATGGTGCGCATCAGTTTC
TTCGCAATGGTGGCCACGATCCTCGTTGTGGTGTGTTGCTTCAGCAAAAT
GGGTGCGGCGGAGGAGGGATTTTTGGGGAAGGCAACCGACAAGATTAAGC
ACGCCGTAGGATTGGAAACAACAGATGAAGCTACCGACCGTGAGGCGTAT
GAGCAGGGAAGGGATGCAATCAAGCACGGCGAGGGTATGATGGAGCACGC
CAAGGAGAAGATTGGAGAAATGCTCCACCATAAAGTGAAGGAGCCAATGG
AGGACAATGTGGAAGCAAGCAAGCGCAAGGCCCAGGAGCAGGCAGAGGCC
GCCAAGGCCCAGGGACAAGGTATCTACGAGACCATTAAGGAGAAGATGAC
TGGGCCGTTCCATTTGGCAAAGGAGAAAGGTCAAGACGCGATGAAGAGCG
CGCAGGAGCGGGCGGAGGCAAGCGCCGAGTATGCGACTGAGGCCGCTGAA
GAAACGCGCCGACAGAGCACCCAAGGTTACGCGAAGACTAAAGCCAATGT
TGACCAGGCTGCTCAGAAGGGCCAGAGCACGATTCGTCAGATGAAGGAGG
ACGTGGAGAACGTACTTGAACAGCAGAAGATCAAAGCCGAAGGTGCGTAC
GAAACCATGAAAGAAAAGACCGGCGAGACCGTGGAACACGCTCAGCAGCA
CGCTCACGACGTCAAGCAGCGCGGGAAGGAGGGCTTAGCATACGCTACGG
GTGCTAAAGATGAAGCGAAAGGCGAGGGCGAGACGCTGATTGGAAGCGCT
ACGCGCAAGGTTAAGGAGGCTTTGGGGACGGAGCACCATGAGAAGCCCAC
GATGGAGAAGGCGACTGAGAGTGGGAAAAAGGCTATGGACAAGGTAAAGG
TACGAAAAGTCTTGCAAAGGGGACGAAAGACTTGCACAATGAATGAAGGA
TGTGAAACATAGATCGGGAGAGAGATTGAAGGCGAATTGTTCGAACGGTT
AAGGGGTGAAAATGGCAAAATGTTATTGGTTGACAGGCATATTCCTCTTT
TCTACATAACAGGAAAAAGTCGGGGAGCTTTAGATGATCTCTCACCACCA
TCACATGTCAACAGAGGAGCCAGGCACTAATAAGGGGGAGAAGGGGCGGG
GAGATGGAGAATGCTTCCACAAGCAAATCAGTATTGACGTTGGATGTGAT
GGCATGCGAAAACAGAAGTTTAAATCTTCAATGTGCAGCAAATGGGATAC
TTCTAAGGTGACAAATTGAAAGGAAGAGACAGGAGAGAAAAAACAAAAGA
AATTGCGAAAGCGCACAGGAAGGAGGGGAGAGAAAGAAGAGATGTCTATC
AAGATGACCAAAAAAAGGAAGGGAGGGATCAATTACATTCATTCGCATGC
AAAATTTAAGGAGGGAAGAAGTTATGAAAGGAAAAAAAGACAATATCCAA
G back to topprotein sequence of jgi.p|Nanoce1779_2|579115 >mRNA_2113-protein ID=mRNA_2113-protein|Name=jgi.p|Nanoce1779_2|579115|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MVRISFFAMVATILVVVCCFSKMGAAEEGFLGKATDKIKHAVGLETTDEA
TDREAYEQGRDAIKHGEGMMEHAKEKIGEMLHHKVKEPMEDNVEASKRKA
QEQAEAAKAQGQGIYETIKEKMTGPFHLAKEKGQDAMKSAQERAEASAEY
ATEAAEETRRQSTQGYAKTKANVDQAAQKGQSTIRQMKEDVENVLEQQKI
KAEGAYETMKEKTGETVEHAQQHAHDVKQRGKEGLAYATGAKDEAKGEGE
TLIGSATRKVKEALGTEHHEKPTMEKATESGKKAMDKVKVRKVLQRGRKT
CTMNEGCET* back to topmRNA from alignment at scaffold_4:838906..840406+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2113 ID=mRNA_2113|Name=jgi.p|Nanoce1779_2|579115|organism=Nannochloropsis oceanica|type=mRNA|length=1501bp|location=Sequence derived from alignment at scaffold_4:838906..840406+ (Nannochloropsis oceanica)
AGGCGAGAAACTAGCCGCGACAAGGTATTACTACATTTTCAATTAGACAA
CACTATTCAAGTCAACAAACAAAGCTGCGAGCATGGTGCGCATCAGTTTC
TTCGCAATGGTGGCCACGATCCTCGTTGTGGTGTGTTGCTTCAGCAAAAT
GGGTGCGGCGGAGGAGGGATTTTTGGGGAAGGCAACCGACAAGATTAAGC
ACGCCGTAGGATTGGAAACAACAGATGAAGCTACCGACCGTGAGGCGTAT
GAGCAGGGAAGGGATGCAATCAAGCACGGCGAGGGTATGATGGAGCACGC
CAAGGAGAAGATTGGAGAAATGCTCCACCATAAAGTGAAGGAGCCAATGG
AGGACAATGTGGAAGCAAGCAAGCGCAAGGCCCAGGAGCAGGCAGAGGCC
GCCAAGGCCCAGGGACAAGGTATCTACGAGACCATTAAGGAGAAGATGAC
TGGGCCGTTCCATTTGGCAAAGGAGAAAGGTCAAGACGCGATGAAGAGCG
CGCAGGAGCGGGCGGAGGCAAGCGCCGAGTATGCGACTGAGGCCGCTGAA
GAAACGCGCCGACAGAGCACCCAAGGTTACGCGAAGACTAAAGCCAATGT
TGACCAGGCTGCTCAGAAGGGCCAGAGCACGATTCGTCAGATGAAGGAGG
ACGTGGAGAACGTACTTGAACAGCAGAAGATCAAAGCCGAAGGTGCGTAC
GAAACCATGAAAGAAAAGACCGGCGAGACCGTGGAACACGCTCAGCAGCA
CGCTCACGACGTCAAGCAGCGCGGGAAGGAGGGCTTAGCATACGCTACGG
GTGCTAAAGATGAAGCGAAAGGCGAGGGCGAGACGCTGATTGGAAGCGCT
ACGCGCAAGGTTAAGGAGGCTTTGGGGACGGAGCACCATGAGAAGCCCAC
GATGGAGAAGGCGACTGAGAGTGGGAAAAAGGCTATGGACAAGGTAAAGG
TACGAAAAGTCTTGCAAAGGGGACGAAAGACTTGCACAATGAATGAAGGA
TGTGAAACATAGATCGGGAGAGAGATTGAAGGCGAATTGTTCGAACGGTT
AAGGGGTGAAAATGGCAAAATGTTATTGGTTGACAGGCATATTCCTCTTT
TCTACATAACAGGAAAAAGTCGGGGAGCTTTAGATGATCTCTCACCACCA
TCACATGTCAACAGAGGAGCCAGGCACTAATAAGGGGGAGAAGGGGCGGG
GAGATGGAGAATGCTTCCACAAGCAAATCAGTATTGACGTTGGATGTGAT
GGCATGCGAAAACAGAAGTTTAAATCTTCAATGTGCAGCAAATGGGATAC
TTCTAAGGTGACAAATTGAAAGGAAGAGACAGGAGAGAAAAAACAAAAGA
AATTGCGAAAGCGCACAGGAAGGAGGGGAGAGAAAGAAGAGATGTCTATC
AAGATGACCAAAAAAAGGAAGGGAGGGATCAATTACATTCATTCGCATGC
AAAATTTAAGGAGGGAAGAAGTTATGAAAGGAAAAAAAGACAATATCCAA
G back to topCoding sequence (CDS) from alignment at scaffold_4:838906..840406+ >mRNA_2113 ID=mRNA_2113|Name=jgi.p|Nanoce1779_2|579115|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_4:838906..840406+ (Nannochloropsis oceanica)
ATGGTGCGCATCAGTTTCTTCGCAATGGTGGCCACGATCCTCGTTGTGGT
GTGTTGCTTCAGCAAAATGGGTGCGGCGGAGGAGGGATTTTTGGGGAAGG
CAACCGACAAGATTAAGCACGCCGTAGGATTGGAAACAACAGATGAAGCT
ACCGACCGTGAGGCGTATGAGCAGGGAAGGGATGCAATCAAGCACGGCGA
GGGTATGATGGAGCACGCCAAGGAGAAGATTGGAGAAATGCTCCACCATA
AAGTGAAGGAGCCAATGGAGGACAATGTGGAAGCAAGCAAGCGCAAGGCC
CAGGAGCAGGCAGAGGCCGCCAAGGCCCAGGGACAAGGTATCTACGAGAC
CATTAAGGAGAAGATGACTGGGCCGTTCCATTTGGCAAAGGAGAAAGGTC
AAGACGCGATGAAGAGCGCGCAGGAGCGGGCGGAGGCAAGCGCCGAGTAT
GCGACTGAGGCCGCTGAAGAAACGCGCCGACAGAGCACCCAAGGTTACGC
GAAGACTAAAGCCAATGTTGACCAGGCTGCTCAGAAGGGCCAGAGCACGA
TTCGTCAGATGAAGGAGGACGTGGAGAACGTACTTGAACAGCAGAAGATC
AAAGCCGAAGGTGCGTACGAAACCATGAAAGAAAAGACCGGCGAGACCGT
GGAACACGCTCAGCAGCACGCTCACGACGTCAAGCAGCGCGGGAAGGAGG
GCTTAGCATACGCTACGGGTGCTAAAGATGAAGCGAAAGGCGAGGGCGAG
ACGCTGATTGGAAGCGCTACGCGCAAGGTTAAGGAGGCTTTGGGGACGGA
GCACCATGAGAAGCCCACGATGGAGAAGGCGACTGAGAGTGGGAAAAAGG
CTATGGACAAGGTAAAGGTACGAAAAGTCTTGCAAAGGGGACGAAAGACT
TGCACAATGAATGAAGGATGTGAAACATAG back to top
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